HHsearch alignment for GI: 254780824 and conserved domain: cd04124

>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=95.03  E-value=0.069  Score=32.10  Aligned_cols=85  Identities=18%  Similarity=0.213  Sum_probs=53.5

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHC---CCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCEE
Q ss_conf             99987878688999999997607888530245202011003---788608999865178977753058367508--9789
Q gi|254780824|r   36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLY---DASIPVAHFDFYRLSSHQEVVELGFDEILN--ERIC  110 (162)
Q Consensus        36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y---~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i~  110 (162)
T Consensus         3 ivllGd~~VGKTsli~r~~~~~f~-~---~~~~Tig~~~~~~~~~~~~~~~~l~iwDtaG~e~f~~~~-~~y~~~a~~~i   77 (161)
T cd04124           3 IILLGDSAVGKSKLVERFLMDGYE-P---QQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMH-ASYYHKAHACI   77 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCC-C---CCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCHHH-HHHHCCCCEEE
T ss_conf             999998996789999999809779-9---726654157999999999999999999799984343246-99735687679


Q ss_pred             EE-------------ECHHHHHCCCCCC
Q ss_conf             99-------------9855632049954
Q gi|254780824|r  111 II-------------EWPEIGRSLLPKK  125 (162)
Q Consensus       111 lI-------------EWpe~~~~~lp~~  125 (162)
T Consensus        78 lvfDit~~~Sf~~~~~w~~~i~~~~~~~  105 (161)
T cd04124          78 LVFDVTRKITYKNLSKWYEELREYRPEI  105 (161)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9996897788999999999999868699