HHsearch alignment for GI: 254780824 and conserved domain: cd04137

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=93.71  E-value=0.21  Score=29.11  Aligned_cols=71  Identities=14%  Similarity=0.163  Sum_probs=40.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC----CCCCEEEEEEECCCCHHHHHCCCHHHHC-C-CC
Q ss_conf             9999878786889999999976078885302452020110037----8860899986517897775305836750-8-97
Q gi|254780824|r   35 CLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD----ASIPVAHFDFYRLSSHQEVVELGFDEIL-N-ER  108 (162)
Q Consensus        35 ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~----~~~~i~H~DlYRL~~~~E~~~lg~~e~~-~-~~  108 (162)
T Consensus         3 KIvlvGd~~VGKTsli~r~~~~~f~~~----y~~Ti--~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~~~-~~~~~~a~~   75 (180)
T cd04137           3 KIAVLGSRSVGKSSLTVQFVEGHFVES----YYPTI--ENTFSKIIRYKGQDYHLEIVDTAGQDEYSILP-QKYSIGIHG   75 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCC----CCCCC--CCCCCEEEEECCEEEEEEEEECCCCCCCCHHH-HHHHHHCCE
T ss_conf             899999899889999999970978998----58812--44113799999999999999899870100667-999863557


Q ss_pred             EEEE
Q ss_conf             8999
Q gi|254780824|r  109 ICII  112 (162)
Q Consensus       109 i~lI  112 (162)
T Consensus        76 ~ilv   79 (180)
T cd04137          76 YILV   79 (180)
T ss_pred             EEEE
T ss_conf             8999