HHsearch alignment for GI: 254780824 and conserved domain: cd04162
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=94.51 E-value=0.1 Score=31.08 Aligned_cols=71 Identities=15% Similarity=0.225 Sum_probs=41.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCEEEE
Q ss_conf 99987878688999999997607888530245202011003788608999865178977753058367508--978999
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ERICII 112 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i~lI 112 (162)
T Consensus 2 IlilGLd~aGKTTil~~l~~~~~~~----~~~PT~Gf-~~~~i~~~~~~l~~wDlgGq~~~R~~-W~~Y~~~~~gIIfV 74 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLE----SVVPTTGF-NSVAIPTQDAIMELLEIGGSQNLRKY-WKRYLSGSQGLIFV 74 (164)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCC----CCCCCCCC-CEEEEEECCEEEEEEECCCHHHHHHH-HHHHHHCCCEEEEE
T ss_conf 9999679998999999981699876----53563277-46999989999999853752888656-99871177589999