HHsearch alignment for GI: 254780824 and conserved domain: cd04172
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=93.50 E-value=0.28 Score=28.44 Aligned_cols=71 Identities=14% Similarity=0.196 Sum_probs=45.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHC----CCCCCEEEEEEECCCCHHHHHCCCHHHHCC-CCE
Q ss_conf 999987878688999999997607888530245202011003----788608999865178977753058367508-978
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLY----DASIPVAHFDFYRLSSHQEVVELGFDEILN-ERI 109 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y----~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~-~~i 109 (162)
T Consensus 7 KivlvGd~~VGKTsLi~r~~~~~F~~~----y~pTi--~~~~~~~~~i~~~~v~l~iwDTaGqe~f~~l~~~~y~~~~~~ 80 (182)
T cd04172 7 KIVVVGDSQCGKTALLHVFAKDCFPEN----YVPTV--FENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCC----CCCEE--EEEEEEEEEECCEEEEEEEEECCCCHHCCCCCHHHHCCCCEE
T ss_conf 999999999899999999983999998----68735--322689999999999999996898620122125551278789
Q ss_pred EE
Q ss_conf 99
Q gi|254780824|r 110 CI 111 (162)
Q Consensus 110 ~l 111 (162)
T Consensus 81 il 82 (182)
T cd04172 81 LI 82 (182)
T ss_pred EE
T ss_conf 99