Query gi|254780824|ref|YP_003065237.1| hypothetical protein CLIBASIA_03585 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 162
No_of_seqs 123 out of 1713
Neff 5.7
Searched_HMMs 39220
Date Sun May 29 19:28:48 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780824.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10646 putative ATPase; Prov 100.0 0 0 308.5 16.7 147 7-155 2-151 (153)
2 COG0802 Predicted ATPase or ki 100.0 2.8E-45 0 294.3 16.4 140 10-151 2-144 (149)
3 TIGR00150 TIGR00150 conserved 100.0 1.8E-44 0 289.2 12.4 131 13-145 2-146 (147)
4 pfam02367 UPF0079 Uncharacteri 100.0 3.2E-43 0 281.7 12.5 120 19-140 1-123 (123)
5 pfam07693 KAP_NTPase KAP famil 97.4 0.00058 1.5E-08 44.6 6.2 62 21-98 3-69 (301)
6 cd02030 NDUO42 NADH:Ubiquinone 97.3 0.00023 5.8E-09 47.1 3.2 27 35-61 1-27 (219)
7 TIGR03015 pepcterm_ATPase puta 97.3 0.001 2.6E-08 43.2 6.4 59 13-71 23-83 (269)
8 cd01130 VirB11-like_ATPase Typ 97.1 0.00072 1.8E-08 44.1 4.3 43 19-61 11-53 (186)
9 PRK09111 DNA polymerase III su 97.1 0.0032 8.3E-08 40.1 7.4 79 21-99 30-119 (600)
10 PRK06696 uridine kinase; Valid 96.9 0.0028 7E-08 40.5 6.1 45 17-61 9-54 (227)
11 PRK07133 DNA polymerase III su 96.9 0.0057 1.5E-07 38.6 7.6 135 22-158 26-192 (718)
12 TIGR02639 ClpA ATP-dependent C 96.9 0.002 5E-08 41.4 5.0 30 31-60 525-554 (774)
13 TIGR00763 lon ATP-dependent pr 96.9 0.0009 2.3E-08 43.5 3.2 30 31-60 447-477 (941)
14 TIGR02673 FtsE cell division A 96.9 0.00093 2.4E-08 43.4 3.2 32 29-60 24-55 (215)
15 PRK13900 type IV secretion sys 96.8 0.0025 6.4E-08 40.8 4.9 41 21-61 148-188 (332)
16 PRK10787 DNA-binding ATP-depen 96.8 0.0029 7.3E-08 40.4 5.1 31 30-60 346-376 (784)
17 cd01673 dNK Deoxyribonucleosid 96.7 0.0013 3.2E-08 42.6 3.1 27 35-61 1-27 (193)
18 TIGR03499 FlhF flagellar biosy 96.7 0.0071 1.8E-07 38.1 6.8 90 16-122 167-267 (282)
19 pfam00437 GSPII_E Type II/IV s 96.7 0.0031 7.8E-08 40.3 4.9 42 18-59 124-165 (283)
20 PRK07667 uridine kinase; Provi 96.7 0.0024 6.1E-08 40.9 4.0 31 31-61 12-42 (190)
21 pfam08298 AAA_PrkA PrkA AAA do 96.7 0.0061 1.6E-07 38.4 6.1 51 16-73 64-118 (358)
22 PRK08533 flagellar accessory p 96.6 0.0022 5.5E-08 41.2 3.7 43 19-61 10-52 (230)
23 PRK06547 hypothetical protein; 96.6 0.0062 1.6E-07 38.4 5.9 32 26-57 6-39 (184)
24 pfam02492 cobW CobW/HypB/UreG, 96.6 0.002 5.1E-08 41.3 3.3 37 35-77 2-38 (174)
25 PRK13894 conjugal transfer ATP 96.6 0.0029 7.4E-08 40.4 4.1 42 19-60 135-176 (320)
26 TIGR02640 gas_vesic_GvpN gas v 96.6 0.0045 1.1E-07 39.3 5.0 97 17-115 5-115 (265)
27 PRK08233 hypothetical protein; 96.6 0.0047 1.2E-07 39.1 5.0 30 31-60 1-30 (182)
28 cd02028 UMPK_like Uridine mono 96.5 0.0027 6.8E-08 40.6 3.6 27 35-61 1-27 (179)
29 PRK06645 DNA polymerase III su 96.5 0.017 4.3E-07 35.8 7.7 136 21-158 28-202 (507)
30 PRK13851 type IV secretion sys 96.5 0.0037 9.5E-08 39.7 4.3 41 21-61 150-190 (343)
31 COG1485 Predicted ATPase [Gene 96.5 0.0075 1.9E-07 37.9 5.8 136 25-160 57-238 (367)
32 PRK04195 replication factor C 96.5 0.01 2.7E-07 37.0 6.5 49 13-61 17-68 (403)
33 COG1428 Deoxynucleoside kinase 96.5 0.0031 8E-08 40.2 3.8 30 32-61 3-32 (216)
34 PRK13833 conjugal transfer pro 96.5 0.0034 8.8E-08 39.9 4.0 41 19-59 130-170 (323)
35 TIGR02788 VirB11 P-type DNA tr 96.5 0.0022 5.6E-08 41.1 3.0 126 22-157 147-283 (328)
36 PRK05480 uridine kinase; Provi 96.5 0.0036 9.2E-08 39.8 4.1 31 31-61 4-34 (209)
37 smart00763 AAA_PrkA PrkA AAA d 96.5 0.0073 1.9E-07 38.0 5.6 44 15-58 56-103 (361)
38 cd00009 AAA The AAA+ (ATPases 96.4 0.0074 1.9E-07 37.9 5.5 29 30-58 16-44 (151)
39 PRK00131 aroK shikimate kinase 96.4 0.0043 1.1E-07 39.3 4.1 30 32-61 3-32 (175)
40 PRK05703 flhF flagellar biosyn 96.4 0.017 4.2E-07 35.8 7.0 101 14-115 183-297 (412)
41 cd03112 CobW_like The function 96.4 0.0029 7.4E-08 40.4 3.0 36 35-77 2-37 (158)
42 KOG0743 consensus 96.4 0.011 2.7E-07 37.0 5.9 60 36-117 238-297 (457)
43 PRK13948 shikimate kinase; Pro 96.4 0.0049 1.3E-07 39.0 4.1 31 31-61 8-38 (182)
44 PRK13539 cytochrome c biogenes 96.3 0.0043 1.1E-07 39.4 3.6 33 28-60 23-55 (206)
45 pfam00485 PRK Phosphoribulokin 96.3 0.0042 1.1E-07 39.4 3.4 27 35-61 1-27 (196)
46 PRK00411 cdc6 cell division co 96.3 0.028 7.2E-07 34.4 7.7 44 16-59 36-81 (394)
47 PRK09270 frcK putative fructos 96.3 0.022 5.5E-07 35.1 7.0 49 13-61 12-62 (230)
48 PRK13540 cytochrome c biogenes 96.3 0.0052 1.3E-07 38.9 3.8 34 27-60 21-54 (200)
49 COG0703 AroK Shikimate kinase 96.3 0.0045 1.1E-07 39.3 3.4 28 34-61 3-30 (172)
50 cd01882 BMS1 Bms1. Bms1 is an 96.2 0.0066 1.7E-07 38.2 4.3 38 31-68 37-74 (225)
51 KOG0744 consensus 96.2 0.0031 7.9E-08 40.2 2.5 30 31-60 175-204 (423)
52 PRK13538 cytochrome c biogenes 96.2 0.0052 1.3E-07 38.8 3.6 33 28-60 22-54 (204)
53 PRK12402 replication factor C 96.2 0.0097 2.5E-07 37.2 5.0 43 15-61 20-64 (337)
54 PRK13542 consensus 96.2 0.0057 1.4E-07 38.6 3.8 32 29-60 40-71 (224)
55 PRK11537 putative GTP-binding 96.2 0.0041 1.1E-07 39.5 3.0 38 33-77 4-41 (317)
56 PRK13543 cytochrome c biogenes 96.2 0.0057 1.4E-07 38.6 3.6 32 29-60 33-64 (214)
57 cd03231 ABC_CcmA_heme_exporter 96.2 0.0059 1.5E-07 38.5 3.6 31 29-59 22-52 (201)
58 PRK13946 shikimate kinase; Pro 96.1 0.011 2.7E-07 37.0 4.9 40 21-61 9-48 (195)
59 PTZ00301 uridine kinase; Provi 96.1 0.0061 1.6E-07 38.4 3.7 28 32-59 2-29 (210)
60 PRK08154 anaerobic benzoate ca 96.1 0.019 4.8E-07 35.5 6.1 48 14-61 108-161 (304)
61 cd02023 UMPK Uridine monophosp 96.1 0.0049 1.3E-07 39.0 3.1 27 35-61 1-27 (198)
62 COG0466 Lon ATP-dependent Lon 96.1 0.012 3.1E-07 36.6 5.1 30 31-60 348-377 (782)
63 PRK09984 phosphonate/organopho 96.1 0.0064 1.6E-07 38.3 3.5 29 29-57 26-54 (262)
64 PRK12323 DNA polymerase III su 96.0 0.036 9.3E-07 33.8 7.2 79 21-99 23-112 (721)
65 TIGR02475 CobW cobalamin biosy 96.0 0.004 1E-07 39.6 2.3 34 37-77 8-41 (349)
66 PRK07003 DNA polymerase III su 96.0 0.038 9.8E-07 33.6 7.2 90 21-116 23-129 (816)
67 pfam00004 AAA ATPase family as 96.0 0.0068 1.7E-07 38.2 3.4 34 36-70 1-34 (131)
68 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.0 0.0079 2E-07 37.8 3.7 74 29-115 22-97 (144)
69 PRK09580 sufC cysteine desulfu 96.0 0.0076 1.9E-07 37.9 3.6 28 29-56 23-50 (248)
70 PRK07429 phosphoribulokinase; 96.0 0.01 2.7E-07 37.0 4.2 33 30-62 5-37 (331)
71 cd03226 ABC_cobalt_CbiO_domain 96.0 0.0079 2E-07 37.8 3.6 32 29-60 22-53 (205)
72 cd03253 ABCC_ATM1_transporter 96.0 0.0076 1.9E-07 37.9 3.5 35 25-59 19-53 (236)
73 cd03236 ABC_RNaseL_inhibitor_d 96.0 0.0078 2E-07 37.8 3.5 30 31-60 24-53 (255)
74 PRK05896 DNA polymerase III su 96.0 0.0077 2E-07 37.8 3.5 137 22-159 24-194 (613)
75 PRK10247 putative ABC transpor 96.0 0.0092 2.4E-07 37.4 3.9 33 28-60 28-60 (225)
76 cd03223 ABCD_peroxisomal_ALDP 95.9 0.0071 1.8E-07 38.1 3.2 41 27-68 21-61 (166)
77 cd03214 ABC_Iron-Siderophores_ 95.9 0.0084 2.2E-07 37.6 3.6 32 29-60 21-52 (180)
78 PRK03731 aroL shikimate kinase 95.9 0.0086 2.2E-07 37.5 3.7 27 35-61 4-30 (172)
79 PRK05057 aroK shikimate kinase 95.9 0.0087 2.2E-07 37.5 3.7 28 34-61 5-32 (172)
80 cd03247 ABCC_cytochrome_bd The 95.9 0.0098 2.5E-07 37.2 3.9 32 29-60 24-55 (178)
81 PRK13548 hmuV hemin importer A 95.9 0.0085 2.2E-07 37.6 3.6 33 28-60 23-55 (257)
82 PRK09544 znuC high-affinity zi 95.9 0.0088 2.2E-07 37.5 3.6 34 28-61 25-58 (251)
83 PRK13541 cytochrome c biogenes 95.9 0.0086 2.2E-07 37.6 3.6 34 27-60 20-53 (195)
84 PRK11264 putative amino-acid A 95.9 0.0086 2.2E-07 37.6 3.6 28 29-56 23-50 (248)
85 CHL00131 ycf16 sulfate ABC tra 95.9 0.0079 2E-07 37.8 3.4 28 28-55 27-54 (252)
86 PRK11701 phnK phosphonates tra 95.9 0.0099 2.5E-07 37.2 3.8 33 28-60 27-59 (258)
87 smart00382 AAA ATPases associa 95.9 0.011 2.7E-07 37.0 4.0 30 32-61 1-30 (148)
88 PRK13546 teichoic acids export 95.9 0.0093 2.4E-07 37.3 3.7 32 29-60 46-77 (264)
89 PRK13949 shikimate kinase; Pro 95.9 0.0093 2.4E-07 37.3 3.7 27 35-61 3-29 (169)
90 cd03224 ABC_TM1139_LivF_branch 95.9 0.0093 2.4E-07 37.3 3.6 32 29-60 22-53 (222)
91 PRK11614 livF leucine/isoleuci 95.9 0.0099 2.5E-07 37.2 3.7 33 28-60 26-58 (237)
92 PRK13638 cbiO cobalt transport 95.9 0.009 2.3E-07 37.4 3.5 32 29-60 23-54 (271)
93 TIGR02315 ABC_phnC phosphonate 95.9 0.007 1.8E-07 38.1 3.0 30 29-58 24-53 (253)
94 cd03246 ABCC_Protease_Secretio 95.9 0.01 2.6E-07 37.1 3.7 33 28-60 23-55 (173)
95 PRK11819 putative ABC transpor 95.9 0.0096 2.5E-07 37.3 3.6 27 29-55 29-55 (556)
96 PRK11231 fecE iron-dicitrate t 95.9 0.0092 2.4E-07 37.4 3.5 32 28-59 23-54 (255)
97 PRK13547 hmuV hemin importer A 95.9 0.0087 2.2E-07 37.5 3.4 30 29-58 23-52 (273)
98 PRK10584 putative ABC transpor 95.8 0.0084 2.1E-07 37.6 3.3 32 28-59 31-62 (228)
99 PRK11629 lolD lipoprotein tran 95.8 0.0095 2.4E-07 37.3 3.5 33 26-58 28-60 (233)
100 PRK11247 ssuB aliphatic sulfon 95.8 0.0085 2.2E-07 37.6 3.3 34 28-61 33-66 (257)
101 pfam07726 AAA_3 ATPase family 95.8 0.009 2.3E-07 37.4 3.4 26 36-61 2-27 (131)
102 PRK03695 vitamin B12-transport 95.8 0.009 2.3E-07 37.4 3.4 30 28-57 18-47 (245)
103 PRK06647 DNA polymerase III su 95.8 0.044 1.1E-06 33.3 6.9 133 21-159 23-194 (560)
104 KOG2004 consensus 95.8 0.014 3.5E-07 36.3 4.3 31 30-60 435-465 (906)
105 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.8 0.011 2.9E-07 36.8 3.9 32 28-59 24-55 (238)
106 cd03268 ABC_BcrA_bacitracin_re 95.8 0.01 2.6E-07 37.1 3.6 33 28-60 21-53 (208)
107 TIGR03411 urea_trans_UrtD urea 95.8 0.01 2.7E-07 37.0 3.6 31 29-59 24-54 (242)
108 cd03289 ABCC_CFTR2 The CFTR su 95.8 0.013 3.4E-07 36.4 4.1 36 26-61 23-58 (275)
109 PRK11300 livG leucine/isoleuci 95.8 0.011 2.7E-07 37.0 3.6 30 29-58 27-56 (255)
110 pfam03215 Rad17 Rad17 cell cyc 95.8 0.029 7.4E-07 34.3 5.8 38 32-70 44-81 (490)
111 COG1121 ZnuC ABC-type Mn/Zn tr 95.8 0.011 2.7E-07 37.0 3.6 31 28-58 25-55 (254)
112 PRK10619 histidine/lysine/argi 95.8 0.01 2.7E-07 37.0 3.5 29 28-56 26-54 (257)
113 cd03269 ABC_putative_ATPase Th 95.8 0.013 3.2E-07 36.6 3.9 32 29-60 22-53 (210)
114 PRK10575 iron-hydroxamate tran 95.8 0.012 2.9E-07 36.8 3.7 31 28-58 32-62 (265)
115 cd03232 ABC_PDR_domain2 The pl 95.8 0.0095 2.4E-07 37.3 3.3 30 26-55 26-55 (192)
116 cd00464 SK Shikimate kinase (S 95.8 0.011 2.9E-07 36.8 3.7 26 36-61 2-27 (154)
117 PRK10895 putative ABC transpor 95.8 0.012 3E-07 36.7 3.7 32 29-60 25-56 (241)
118 cd03251 ABCC_MsbA MsbA is an e 95.8 0.012 3E-07 36.8 3.7 32 29-60 24-55 (234)
119 PRK08853 DNA polymerase III su 95.7 0.047 1.2E-06 33.1 6.7 94 22-118 24-131 (717)
120 PRK10744 phosphate transporter 95.7 0.012 3.1E-07 36.7 3.7 31 28-58 31-61 (257)
121 cd03222 ABC_RNaseL_inhibitor T 95.7 0.012 3.2E-07 36.6 3.8 32 29-60 21-52 (177)
122 PRK13544 consensus 95.7 0.011 2.9E-07 36.8 3.6 33 28-60 22-54 (208)
123 PRK08116 hypothetical protein; 95.7 0.026 6.6E-07 34.6 5.4 53 18-70 89-147 (262)
124 COG3267 ExeA Type II secretory 95.7 0.018 4.6E-07 35.6 4.5 49 25-73 42-93 (269)
125 cd03217 ABC_FeS_Assembly ABC-t 95.7 0.011 2.8E-07 36.9 3.4 29 28-56 21-49 (200)
126 PRK13947 shikimate kinase; Pro 95.7 0.012 3.1E-07 36.7 3.6 26 36-61 4-29 (171)
127 PRK10938 putative molybdenum t 95.7 0.011 2.8E-07 36.9 3.4 27 29-55 282-308 (490)
128 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.7 0.011 2.9E-07 36.9 3.4 32 28-59 25-56 (218)
129 PRK03992 proteasome-activating 95.7 0.014 3.5E-07 36.3 3.9 40 30-70 163-202 (390)
130 cd03225 ABC_cobalt_CbiO_domain 95.7 0.014 3.5E-07 36.3 3.9 33 28-60 22-54 (211)
131 TIGR02397 dnaX_nterm DNA polym 95.7 0.016 4.1E-07 35.9 4.2 73 21-99 21-104 (363)
132 PRK11831 putative ABC transpor 95.7 0.011 2.9E-07 36.8 3.4 34 27-60 28-61 (269)
133 cd03288 ABCC_SUR2 The SUR doma 95.7 0.012 3.2E-07 36.6 3.6 35 26-60 40-74 (257)
134 cd03369 ABCC_NFT1 Domain 2 of 95.7 0.018 4.5E-07 35.7 4.3 33 28-60 29-61 (207)
135 cd03230 ABC_DR_subfamily_A Thi 95.7 0.013 3.2E-07 36.5 3.6 32 29-60 22-53 (173)
136 cd03228 ABCC_MRP_Like The MRP 95.7 0.013 3.4E-07 36.4 3.7 33 28-60 23-55 (171)
137 COG1131 CcmA ABC-type multidru 95.6 0.012 3E-07 36.7 3.4 31 29-59 27-57 (293)
138 cd03244 ABCC_MRP_domain2 Domai 95.6 0.014 3.6E-07 36.2 3.8 32 29-60 26-57 (221)
139 TIGR03410 urea_trans_UrtE urea 95.6 0.013 3.2E-07 36.5 3.5 32 29-60 22-53 (230)
140 cd03235 ABC_Metallic_Cations A 95.6 0.013 3.4E-07 36.4 3.6 32 29-60 21-52 (213)
141 cd03245 ABCC_bacteriocin_expor 95.6 0.014 3.5E-07 36.3 3.6 32 29-60 26-57 (220)
142 cd03252 ABCC_Hemolysin The ABC 95.6 0.014 3.5E-07 36.3 3.6 33 28-60 23-55 (237)
143 PRK11160 cysteine/glutathione 95.6 0.015 3.9E-07 36.0 3.9 37 25-61 359-395 (575)
144 PRK00440 rfc replication facto 95.6 0.038 9.6E-07 33.7 5.9 25 36-60 40-64 (318)
145 COG1126 GlnQ ABC-type polar am 95.6 0.013 3.2E-07 36.5 3.4 29 28-56 23-51 (240)
146 cd03254 ABCC_Glucan_exporter_l 95.6 0.015 3.7E-07 36.2 3.7 32 29-60 25-56 (229)
147 cd03278 ABC_SMC_barmotin Barmo 95.6 0.019 4.7E-07 35.5 4.3 32 29-61 19-50 (197)
148 PRK06872 DNA polymerase III su 95.6 0.066 1.7E-06 32.2 7.0 91 21-117 23-130 (696)
149 PRK10789 putative multidrug tr 95.6 0.018 4.5E-07 35.7 4.1 37 24-60 332-368 (569)
150 PRK10771 thiQ thiamine transpo 95.6 0.015 3.8E-07 36.1 3.7 34 27-60 19-52 (233)
151 COG0523 Putative GTPases (G3E 95.6 0.012 3E-07 36.8 3.1 36 35-77 3-38 (323)
152 cd03259 ABC_Carb_Solutes_like 95.6 0.014 3.5E-07 36.3 3.5 30 29-58 22-51 (213)
153 PRK10908 cell division protein 95.6 0.013 3.2E-07 36.6 3.3 32 28-59 23-54 (222)
154 COG4178 ABC-type uncharacteriz 95.6 0.018 4.5E-07 35.6 4.1 56 21-77 407-467 (604)
155 PRK09493 glnQ glutamine ABC tr 95.6 0.014 3.6E-07 36.2 3.5 33 28-60 22-54 (240)
156 COG1419 FlhF Flagellar GTP-bin 95.6 0.12 3.1E-06 30.6 8.4 73 31-120 201-274 (407)
157 PRK11248 tauB taurine transpor 95.6 0.013 3.4E-07 36.4 3.4 33 28-60 22-54 (255)
158 cd03250 ABCC_MRP_domain1 Domai 95.6 0.013 3.4E-07 36.4 3.4 32 28-59 26-57 (204)
159 TIGR03522 GldA_ABC_ATP gliding 95.6 0.014 3.6E-07 36.3 3.5 32 29-60 24-55 (301)
160 cd03266 ABC_NatA_sodium_export 95.5 0.014 3.7E-07 36.2 3.5 33 28-60 26-58 (218)
161 cd03238 ABC_UvrA The excision 95.5 0.017 4.3E-07 35.7 3.9 31 29-59 17-47 (176)
162 cd03291 ABCC_CFTR1 The CFTR su 95.5 0.015 3.8E-07 36.1 3.6 32 29-60 59-90 (282)
163 PRK10253 iron-enterobactin tra 95.5 0.012 3.1E-07 36.7 3.1 31 28-58 28-58 (265)
164 cd03213 ABCG_EPDR ABCG transpo 95.5 0.013 3.3E-07 36.5 3.2 30 26-55 28-57 (194)
165 cd02022 DPCK Dephospho-coenzym 95.5 0.011 2.9E-07 36.8 3.0 25 35-60 1-25 (179)
166 KOG3877 consensus 95.5 0.015 3.8E-07 36.1 3.6 47 30-76 68-121 (393)
167 PRK10938 putative molybdenum t 95.5 0.014 3.5E-07 36.3 3.3 31 29-59 25-55 (490)
168 TIGR03269 met_CoM_red_A2 methy 95.5 0.015 3.7E-07 36.2 3.5 28 30-57 307-334 (520)
169 cd03248 ABCC_TAP TAP, the Tran 95.5 0.016 4.1E-07 35.9 3.7 35 26-60 33-67 (226)
170 PRK11174 cysteine/glutathione 95.5 0.02 5.1E-07 35.4 4.1 36 23-58 366-401 (588)
171 cd03237 ABC_RNaseL_inhibitor_d 95.5 0.016 4.1E-07 35.9 3.6 33 29-61 21-53 (246)
172 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.5 0.015 3.9E-07 36.1 3.5 32 29-60 44-75 (224)
173 PRK07261 topology modulation p 95.5 0.016 4.1E-07 35.9 3.6 26 35-60 2-27 (171)
174 PRK13409 putative ATPase RIL; 95.5 0.014 3.6E-07 36.2 3.3 59 7-66 65-131 (590)
175 cd03218 ABC_YhbG The ABC trans 95.5 0.016 4E-07 35.9 3.6 32 29-60 22-53 (232)
176 PRK13652 cbiO cobalt transport 95.5 0.015 3.7E-07 36.1 3.3 33 28-60 25-57 (277)
177 PRK08118 topology modulation p 95.5 0.017 4.3E-07 35.8 3.6 83 35-133 3-87 (167)
178 cd03267 ABC_NatA_like Similar 95.5 0.015 3.9E-07 36.0 3.4 32 29-60 43-74 (236)
179 cd03233 ABC_PDR_domain1 The pl 95.5 0.015 3.8E-07 36.1 3.4 32 28-59 28-59 (202)
180 PRK13647 cbiO cobalt transport 95.5 0.016 4E-07 36.0 3.5 33 27-59 25-57 (273)
181 PRK08691 DNA polymerase III su 95.5 0.083 2.1E-06 31.6 7.2 91 22-118 24-131 (704)
182 cd00876 Ras Ras family. The R 95.4 0.049 1.3E-06 33.0 6.0 85 36-127 2-105 (160)
183 PRK13635 cbiO cobalt transport 95.4 0.018 4.5E-07 35.7 3.7 34 27-60 27-60 (279)
184 PRK05541 adenylylsulfate kinas 95.4 0.019 4.7E-07 35.5 3.8 32 30-61 4-35 (176)
185 PRK11144 modC molybdate transp 95.4 0.016 4.2E-07 35.9 3.5 30 29-58 20-49 (352)
186 PRK13537 lipooligosaccharide t 95.4 0.017 4.3E-07 35.8 3.6 32 29-60 27-58 (304)
187 cd02026 PRK Phosphoribulokinas 95.4 0.016 4E-07 36.0 3.4 28 35-62 1-28 (273)
188 PRK13644 cbiO cobalt transport 95.4 0.017 4.3E-07 35.8 3.5 34 26-59 21-54 (274)
189 cd03219 ABC_Mj1267_LivG_branch 95.4 0.018 4.5E-07 35.7 3.6 32 29-60 22-53 (236)
190 TIGR02982 heterocyst_DevA ABC 95.4 0.01 2.6E-07 37.1 2.4 26 29-54 27-52 (220)
191 PRK06731 flhF flagellar biosyn 95.4 0.017 4.2E-07 35.8 3.5 30 31-60 73-102 (270)
192 PRK11022 dppD dipeptide transp 95.4 0.018 4.6E-07 35.6 3.6 32 28-59 28-59 (327)
193 cd03216 ABC_Carb_Monos_I This 95.4 0.018 4.6E-07 35.6 3.6 31 29-59 22-52 (163)
194 PRK10790 putative multidrug tr 95.4 0.026 6.6E-07 34.7 4.4 37 24-60 358-394 (593)
195 PRK08939 primosomal protein Dn 95.4 0.041 1E-06 33.5 5.4 61 11-71 130-197 (306)
196 COG0572 Udk Uridine kinase [Nu 95.4 0.02 5.1E-07 35.4 3.8 30 32-61 7-36 (218)
197 PRK11147 ABC transporter ATPas 95.4 0.019 4.8E-07 35.5 3.6 27 30-56 26-52 (632)
198 COG0237 CoaE Dephospho-CoA kin 95.4 0.018 4.6E-07 35.6 3.5 26 34-60 3-28 (201)
199 cd03234 ABCG_White The White s 95.4 0.016 4.2E-07 35.9 3.3 31 28-58 28-58 (226)
200 PRK13636 cbiO cobalt transport 95.4 0.018 4.7E-07 35.5 3.5 32 27-58 26-57 (285)
201 PRK13651 cobalt transporter AT 95.3 0.019 4.8E-07 35.5 3.6 32 27-58 27-58 (304)
202 PRK13657 cyclic beta-1,2-gluca 95.3 0.024 6E-07 34.9 4.1 37 24-60 352-388 (585)
203 TIGR02928 TIGR02928 orc1/cdc6 95.3 0.05 1.3E-06 32.9 5.7 68 16-95 23-94 (383)
204 PRK11124 artP arginine transpo 95.3 0.019 4.9E-07 35.5 3.6 27 28-54 23-49 (242)
205 PRK00625 shikimate kinase; Pro 95.3 0.02 5.1E-07 35.3 3.7 27 35-61 2-28 (173)
206 PRK10419 nikE nickel transport 95.3 0.018 4.5E-07 35.7 3.4 30 27-56 32-61 (266)
207 pfam07728 AAA_5 AAA domain (dy 95.3 0.019 4.7E-07 35.5 3.5 25 36-60 2-26 (139)
208 PRK11176 lipid transporter ATP 95.3 0.02 5.1E-07 35.3 3.6 36 25-60 360-395 (581)
209 PRK08451 DNA polymerase III su 95.3 0.038 9.6E-07 33.7 5.0 131 22-158 22-191 (523)
210 pfam05496 RuvB_N Holliday junc 95.3 0.04 1E-06 33.5 5.1 50 36-86 53-108 (234)
211 cd03263 ABC_subfamily_A The AB 95.3 0.02 5E-07 35.4 3.5 32 29-60 24-55 (220)
212 cd04160 Arfrp1 Arfrp1 subfamil 95.3 0.053 1.4E-06 32.8 5.8 75 36-112 2-80 (167)
213 PRK10636 putative ABC transpor 95.3 0.017 4.3E-07 35.8 3.2 32 29-60 23-54 (638)
214 PRK13648 cbiO cobalt transport 95.3 0.022 5.7E-07 35.0 3.8 35 26-60 28-62 (269)
215 pfam05729 NACHT NACHT domain. 95.3 0.019 4.9E-07 35.4 3.5 46 35-93 2-47 (165)
216 TIGR03608 L_ocin_972_ABC putat 95.3 0.02 5.2E-07 35.3 3.5 28 29-56 20-47 (206)
217 PRK05648 DNA polymerase III su 95.3 0.028 7.1E-07 34.5 4.2 92 21-118 23-131 (705)
218 KOG0651 consensus 95.3 0.029 7.3E-07 34.4 4.3 44 30-76 163-206 (388)
219 PRK10522 multidrug transporter 95.3 0.022 5.5E-07 35.1 3.6 38 24-61 340-377 (547)
220 PRK06305 DNA polymerase III su 95.3 0.087 2.2E-06 31.5 6.7 133 22-159 25-196 (462)
221 cd03260 ABC_PstB_phosphate_tra 95.2 0.022 5.6E-07 35.1 3.7 29 29-57 22-50 (227)
222 PRK13646 cbiO cobalt transport 95.2 0.021 5.3E-07 35.2 3.5 34 26-59 26-59 (286)
223 PRK13536 nodulation factor exp 95.2 0.021 5.3E-07 35.2 3.5 32 29-60 29-60 (306)
224 PRK07994 DNA polymerase III su 95.2 0.11 2.9E-06 30.8 7.3 90 22-117 24-130 (643)
225 PRK11819 putative ABC transpor 95.2 0.02 5.2E-07 35.3 3.4 32 28-59 345-376 (556)
226 PRK06067 flagellar accessory p 95.2 0.026 6.6E-07 34.7 4.0 41 21-61 20-60 (241)
227 cd03240 ABC_Rad50 The catalyti 95.2 0.024 6.2E-07 34.8 3.7 28 31-58 20-47 (204)
228 pfam03969 AFG1_ATPase AFG1-lik 95.2 0.11 2.9E-06 30.8 7.2 113 32-144 60-210 (361)
229 PRK12726 flagellar biosynthesi 95.2 0.02 5.1E-07 35.3 3.3 52 30-97 203-254 (407)
230 PRK13650 cbiO cobalt transport 95.2 0.023 5.9E-07 35.0 3.6 33 28-60 25-57 (276)
231 PRK07764 DNA polymerase III su 95.2 0.023 5.9E-07 35.0 3.6 132 22-159 23-195 (775)
232 PRK13640 cbiO cobalt transport 95.2 0.021 5.4E-07 35.2 3.4 32 28-59 29-60 (283)
233 cd03257 ABC_NikE_OppD_transpor 95.2 0.022 5.5E-07 35.1 3.4 34 26-59 24-57 (228)
234 cd03290 ABCC_SUR1_N The SUR do 95.2 0.025 6.3E-07 34.8 3.7 32 29-60 23-54 (218)
235 TIGR03269 met_CoM_red_A2 methy 95.2 0.019 4.9E-07 35.4 3.2 27 29-55 22-48 (520)
236 PRK13642 cbiO cobalt transport 95.2 0.021 5.3E-07 35.2 3.3 32 28-59 28-59 (277)
237 PRK09473 oppD oligopeptide tra 95.2 0.019 4.9E-07 35.5 3.1 34 26-59 35-68 (330)
238 cd04119 RJL RJL (RabJ-Like) su 95.2 0.061 1.5E-06 32.4 5.7 72 36-112 3-79 (168)
239 PRK06921 hypothetical protein; 95.1 0.058 1.5E-06 32.5 5.6 44 17-60 95-143 (265)
240 PRK10762 D-ribose transporter 95.1 0.024 6.1E-07 34.9 3.6 29 29-57 274-302 (501)
241 PRK13764 ATPase; Provisional 95.1 0.038 9.7E-07 33.6 4.6 42 20-61 245-287 (605)
242 cd03215 ABC_Carb_Monos_II This 95.1 0.013 3.4E-07 36.4 2.3 32 29-60 22-53 (182)
243 PRK09536 btuD corrinoid ABC tr 95.1 0.023 5.9E-07 34.9 3.5 31 29-59 24-54 (409)
244 PRK11308 dppF dipeptide transp 95.1 0.019 4.7E-07 35.5 3.0 29 28-56 36-64 (327)
245 PRK13643 cbiO cobalt transport 95.1 0.022 5.6E-07 35.1 3.3 34 26-59 25-58 (288)
246 PRK11147 ABC transporter ATPas 95.1 0.023 5.9E-07 35.0 3.5 33 28-60 340-372 (632)
247 PRK10636 putative ABC transpor 95.1 0.021 5.3E-07 35.2 3.2 34 27-60 332-365 (638)
248 COG1120 FepC ABC-type cobalami 95.1 0.028 7.2E-07 34.4 3.9 36 26-61 21-56 (258)
249 PRK10078 ribose 1,5-bisphospho 95.1 0.037 9.4E-07 33.7 4.5 68 33-114 2-69 (184)
250 PRK08770 DNA polymerase III su 95.1 0.12 3.1E-06 30.6 7.1 94 21-117 23-130 (663)
251 TIGR00382 clpX ATP-dependent C 95.1 0.021 5.4E-07 35.2 3.2 33 35-69 154-186 (452)
252 pfam01121 CoaE Dephospho-CoA k 95.1 0.025 6.4E-07 34.7 3.6 26 34-60 1-26 (179)
253 pfam06745 KaiC KaiC. This fami 95.1 0.028 7.2E-07 34.4 3.8 34 22-55 8-41 (231)
254 cd03300 ABC_PotA_N PotA is an 95.1 0.025 6.4E-07 34.7 3.5 31 29-59 22-52 (232)
255 PRK13632 cbiO cobalt transport 95.1 0.024 6.1E-07 34.8 3.4 34 26-59 29-62 (273)
256 PRK13637 cbiO cobalt transport 95.1 0.022 5.5E-07 35.1 3.2 33 26-58 26-58 (287)
257 pfam08477 Miro Miro-like prote 95.0 0.083 2.1E-06 31.6 6.1 61 36-99 2-65 (118)
258 PRK10982 galactose/methyl gala 95.0 0.026 6.6E-07 34.7 3.5 29 30-58 271-299 (491)
259 COG1474 CDC6 Cdc6-related prot 95.0 0.18 4.6E-06 29.6 7.8 46 15-60 22-69 (366)
260 cd03293 ABC_NrtD_SsuB_transpor 95.0 0.024 6.2E-07 34.8 3.4 31 29-59 26-56 (220)
261 cd04124 RabL2 RabL2 subfamily. 95.0 0.069 1.8E-06 32.1 5.7 85 36-125 3-105 (161)
262 cd03256 ABC_PhnC_transporter A 95.0 0.026 6.5E-07 34.7 3.5 31 29-59 23-53 (241)
263 cd03296 ABC_CysA_sulfate_impor 95.0 0.025 6.4E-07 34.8 3.4 32 28-59 23-54 (239)
264 PRK10261 glutathione transport 95.0 0.03 7.6E-07 34.3 3.8 29 29-57 38-66 (623)
265 cd03265 ABC_DrrA DrrA is the A 95.0 0.029 7.3E-07 34.4 3.7 33 29-61 22-54 (220)
266 PRK13549 xylose transporter AT 95.0 0.026 6.7E-07 34.6 3.5 29 29-57 284-312 (513)
267 PRK13639 cbiO cobalt transport 95.0 0.026 6.7E-07 34.6 3.5 31 28-58 23-53 (275)
268 cd03299 ABC_ModC_like Archeal 95.0 0.026 6.6E-07 34.7 3.4 32 28-59 20-51 (235)
269 COG0467 RAD55 RecA-superfamily 95.0 0.035 8.9E-07 33.9 4.1 39 22-60 12-50 (260)
270 PRK13634 cbiO cobalt transport 95.0 0.023 6E-07 34.9 3.2 30 29-58 16-45 (276)
271 KOG0989 consensus 95.0 0.11 2.7E-06 30.9 6.5 56 18-77 44-99 (346)
272 pfam00931 NB-ARC NB-ARC domain 95.0 0.059 1.5E-06 32.5 5.2 61 16-76 2-67 (285)
273 TIGR02173 cyt_kin_arch cytidyl 95.0 0.029 7.3E-07 34.4 3.6 107 34-156 1-126 (173)
274 PRK13633 cobalt transporter AT 94.9 0.028 7.2E-07 34.4 3.5 31 28-58 32-62 (281)
275 cd03264 ABC_drug_resistance_li 94.9 0.026 6.6E-07 34.6 3.3 31 29-60 22-52 (211)
276 PRK09700 D-allose transporter 94.9 0.027 7E-07 34.5 3.4 30 29-58 285-314 (510)
277 cd04102 RabL3 RabL3 (Rab-like3 94.9 0.11 2.8E-06 30.8 6.5 72 36-112 3-84 (202)
278 cd04130 Wrch_1 Wrch-1 subfamil 94.9 0.076 1.9E-06 31.8 5.7 58 36-99 3-64 (173)
279 PRK04328 hypothetical protein; 94.9 0.035 9E-07 33.9 3.9 36 22-57 13-48 (250)
280 cd02020 CMPK Cytidine monophos 94.9 0.025 6.4E-07 34.7 3.2 92 35-137 1-95 (147)
281 PRK06674 DNA polymerase III su 94.9 0.13 3.4E-06 30.4 6.9 131 21-158 23-193 (563)
282 COG1100 GTPase SAR1 and relate 94.9 0.078 2E-06 31.8 5.7 27 34-60 6-32 (219)
283 cd02019 NK Nucleoside/nucleoti 94.9 0.021 5.3E-07 35.2 2.7 26 35-60 1-26 (69)
284 cd04157 Arl6 Arl6 subfamily. 94.9 0.059 1.5E-06 32.5 5.1 72 36-112 2-75 (162)
285 PRK10851 sulfate/thiosulfate t 94.9 0.028 7.2E-07 34.4 3.4 31 29-59 24-54 (352)
286 cd03295 ABC_OpuCA_Osmoprotecti 94.9 0.029 7.4E-07 34.4 3.4 32 28-59 22-53 (242)
287 COG2884 FtsE Predicted ATPase 94.9 0.032 8.2E-07 34.1 3.6 33 28-60 23-55 (223)
288 cd03261 ABC_Org_Solvent_Resist 94.9 0.031 8E-07 34.2 3.5 32 28-59 21-52 (235)
289 cd00267 ABC_ATPase ABC (ATP-bi 94.8 0.032 8.3E-07 34.1 3.6 31 29-59 21-51 (157)
290 PRK11288 araG L-arabinose tran 94.8 0.031 8E-07 34.2 3.5 30 29-58 275-304 (501)
291 TIGR00635 ruvB Holliday juncti 94.8 0.029 7.3E-07 34.4 3.2 89 33-144 30-127 (305)
292 PRK11153 metN DL-methionine tr 94.8 0.031 8E-07 34.1 3.4 27 29-55 27-53 (343)
293 cd01862 Rab7 Rab7 subfamily. 94.8 0.081 2.1E-06 31.7 5.5 73 36-112 3-79 (172)
294 PRK06995 flhF flagellar biosyn 94.8 0.025 6.3E-07 34.8 2.9 85 31-116 174-264 (404)
295 cd04125 RabA_like RabA-like su 94.8 0.095 2.4E-06 31.3 5.8 84 36-124 3-104 (188)
296 cd03297 ABC_ModC_molybdenum_tr 94.8 0.031 8E-07 34.2 3.4 26 32-57 22-47 (214)
297 COG1123 ATPase components of v 94.8 0.032 8.1E-07 34.1 3.4 32 28-59 312-343 (539)
298 PRK13649 cbiO cobalt transport 94.8 0.032 8.1E-07 34.1 3.4 33 26-58 26-58 (280)
299 PRK13631 cbiO cobalt transport 94.8 0.034 8.8E-07 33.9 3.6 33 27-59 46-78 (320)
300 PRK11650 ugpC glycerol-3-phosp 94.8 0.032 8.1E-07 34.1 3.4 32 28-59 25-56 (358)
301 cd03229 ABC_Class3 This class 94.7 0.035 8.9E-07 33.9 3.5 30 28-57 21-50 (178)
302 cd02025 PanK Pantothenate kina 94.7 0.027 7E-07 34.5 3.0 26 35-60 1-26 (220)
303 PRK13645 cbiO cobalt transport 94.7 0.033 8.3E-07 34.0 3.4 31 27-57 31-61 (289)
304 COG0541 Ffh Signal recognition 94.7 0.03 7.5E-07 34.3 3.1 32 30-61 97-128 (451)
305 cd01875 RhoG RhoG subfamily. 94.7 0.11 2.9E-06 30.8 6.1 71 35-111 5-80 (191)
306 PRK00889 adenylylsulfate kinas 94.7 0.043 1.1E-06 33.3 3.9 31 30-60 1-31 (175)
307 PRK13641 cbiO cobalt transport 94.7 0.03 7.7E-07 34.3 3.1 32 27-58 27-58 (286)
308 PRK05563 DNA polymerase III su 94.7 0.067 1.7E-06 32.2 4.9 135 22-158 24-193 (541)
309 PRK01184 hypothetical protein; 94.7 0.036 9.2E-07 33.8 3.5 26 34-60 2-27 (183)
310 pfam01583 APS_kinase Adenylyls 94.7 0.04 1E-06 33.5 3.7 29 32-60 1-29 (157)
311 PRK13342 recombination factor 94.7 0.039 9.9E-07 33.6 3.6 83 26-113 28-125 (417)
312 PRK13407 bchI magnesium chelat 94.7 0.086 2.2E-06 31.5 5.4 41 18-58 14-54 (334)
313 PRK13549 xylose transporter AT 94.7 0.035 8.9E-07 33.9 3.4 29 29-57 27-55 (513)
314 PRK09452 potA putrescine/sperm 94.6 0.036 9.2E-07 33.8 3.4 32 28-59 38-69 (378)
315 COG0488 Uup ATPase components 94.6 0.038 9.8E-07 33.6 3.5 32 29-60 25-56 (530)
316 PRK10418 nikD nickel transport 94.6 0.031 7.8E-07 34.2 3.0 34 26-59 22-55 (254)
317 cd04118 Rab24 Rab24 subfamily. 94.6 0.13 3.3E-06 30.4 6.2 88 36-127 3-108 (193)
318 KOG1970 consensus 94.6 0.1 2.7E-06 31.0 5.7 57 32-89 109-165 (634)
319 PRK03846 adenylylsulfate kinas 94.6 0.075 1.9E-06 31.9 5.0 35 26-60 17-51 (198)
320 pfam00448 SRP54 SRP54-type pro 94.6 0.028 7.2E-07 34.4 2.8 28 33-60 1-28 (196)
321 pfam06431 Polyoma_lg_T_C Polyo 94.6 0.11 2.8E-06 30.8 5.8 107 17-124 139-259 (417)
322 cd03301 ABC_MalK_N The N-termi 94.6 0.04 1E-06 33.5 3.5 32 29-60 22-53 (213)
323 COG2812 DnaX DNA polymerase II 94.6 0.036 9.1E-07 33.8 3.3 92 21-118 23-131 (515)
324 cd03262 ABC_HisP_GlnQ_permease 94.6 0.039 9.9E-07 33.6 3.5 31 28-58 21-51 (213)
325 COG4088 Predicted nucleotide k 94.6 0.032 8.2E-07 34.1 3.1 28 35-62 3-30 (261)
326 cd03294 ABC_Pro_Gly_Bertaine T 94.6 0.036 9.1E-07 33.8 3.3 31 29-59 46-76 (269)
327 PRK09700 D-allose transporter 94.6 0.036 9.1E-07 33.8 3.3 30 29-58 27-56 (510)
328 TIGR00959 ffh signal recogniti 94.6 0.039 9.8E-07 33.6 3.4 77 10-101 73-156 (439)
329 COG1855 ATPase (PilT family) [ 94.5 0.033 8.3E-07 34.0 3.0 40 22-61 251-291 (604)
330 pfam00158 Sigma54_activat Sigm 94.5 0.085 2.2E-06 31.5 5.1 41 16-56 5-45 (168)
331 PRK00023 cmk cytidylate kinase 94.5 0.046 1.2E-06 33.2 3.8 30 32-61 3-32 (225)
332 COG1132 MdlB ABC-type multidru 94.5 0.053 1.3E-06 32.8 4.1 32 29-60 351-382 (567)
333 PRK10762 D-ribose transporter 94.5 0.041 1E-06 33.5 3.5 32 29-60 26-57 (501)
334 pfam00071 Ras Ras family. Incl 94.5 0.1 2.6E-06 31.0 5.5 84 36-124 2-103 (162)
335 cd00154 Rab Rab family. Rab G 94.5 0.1 2.6E-06 31.0 5.5 83 36-123 3-103 (159)
336 cd04162 Arl9_Arfrp2_like Arl9/ 94.5 0.1 2.6E-06 31.1 5.5 71 36-112 2-74 (164)
337 pfam03308 ArgK ArgK protein. T 94.5 0.12 3.1E-06 30.6 5.9 45 17-61 13-57 (267)
338 PRK00081 coaE dephospho-CoA ki 94.5 0.045 1.1E-06 33.2 3.6 26 34-60 3-28 (199)
339 cd03271 ABC_UvrA_II The excisi 94.5 0.045 1.2E-06 33.2 3.7 26 29-54 17-42 (261)
340 PRK11607 potG putrescine trans 94.5 0.039 9.8E-07 33.6 3.3 32 28-59 40-71 (377)
341 PRK12724 flagellar biosynthesi 94.5 0.22 5.6E-06 29.0 7.1 70 34-120 224-293 (432)
342 PRK13951 bifunctional shikimat 94.5 0.045 1.2E-06 33.2 3.6 27 35-61 2-28 (488)
343 smart00175 RAB Rab subfamily o 94.5 0.13 3.3E-06 30.4 6.0 60 36-99 3-65 (164)
344 cd03292 ABC_FtsE_transporter F 94.5 0.043 1.1E-06 33.3 3.5 30 29-58 23-52 (214)
345 cd04121 Rab40 Rab40 subfamily. 94.4 0.11 2.8E-06 30.9 5.5 84 36-124 9-110 (189)
346 COG0563 Adk Adenylate kinase a 94.4 0.046 1.2E-06 33.2 3.5 27 35-61 2-28 (178)
347 PRK11000 maltose/maltodextrin 94.4 0.043 1.1E-06 33.3 3.4 32 27-58 23-54 (369)
348 COG0464 SpoVK ATPases of the A 94.4 0.14 3.5E-06 30.3 6.0 45 29-76 272-316 (494)
349 cd04106 Rab23_lke Rab23-like s 94.4 0.18 4.7E-06 29.5 6.6 84 36-124 3-106 (162)
350 PRK10261 glutathione transport 94.4 0.038 9.6E-07 33.7 3.1 35 26-60 343-377 (623)
351 TIGR01192 chvA glucan exporter 94.4 0.038 9.6E-07 33.7 3.1 29 29-57 357-385 (592)
352 PRK13768 GTPase; Provisional 94.4 0.047 1.2E-06 33.1 3.6 27 34-60 3-29 (253)
353 cd04128 Spg1 Spg1p. Spg1p (se 94.4 0.37 9.4E-06 27.7 8.1 84 36-125 3-105 (182)
354 PRK00080 ruvB Holliday junctio 94.4 0.13 3.4E-06 30.4 5.9 37 32-70 50-87 (328)
355 cd03115 SRP The signal recogni 94.4 0.047 1.2E-06 33.1 3.5 25 34-58 1-25 (173)
356 cd00878 Arf_Arl Arf (ADP-ribos 94.4 0.089 2.3E-06 31.4 4.9 70 36-112 2-73 (158)
357 TIGR02324 CP_lyasePhnL phospho 94.4 0.036 9.3E-07 33.8 3.0 33 29-61 30-62 (224)
358 TIGR02204 MsbA_rel ABC transpo 94.4 0.05 1.3E-06 32.9 3.6 33 28-60 361-393 (576)
359 PRK10982 galactose/methyl gala 94.4 0.042 1.1E-06 33.4 3.2 32 29-60 20-51 (491)
360 PRK08903 hypothetical protein; 94.4 0.15 3.8E-06 30.0 6.0 42 19-60 28-69 (227)
361 cd02024 NRK1 Nicotinamide ribo 94.3 0.039 1E-06 33.6 3.1 24 35-58 1-24 (187)
362 KOG1969 consensus 94.3 0.047 1.2E-06 33.1 3.5 31 31-61 324-354 (877)
363 cd04123 Rab21 Rab21 subfamily. 94.3 0.12 3.2E-06 30.5 5.6 83 36-124 3-104 (162)
364 cd04153 Arl5_Arl8 Arl5/Arl8 su 94.3 0.094 2.4E-06 31.3 5.0 72 34-112 16-89 (174)
365 cd01672 TMPK Thymidine monopho 94.3 0.05 1.3E-06 32.9 3.6 27 35-61 2-28 (200)
366 COG1118 CysA ABC-type sulfate/ 94.3 0.049 1.2E-06 33.0 3.5 34 26-59 21-54 (345)
367 COG5192 BMS1 GTP-binding prote 94.3 0.049 1.3E-06 33.0 3.5 33 29-61 65-97 (1077)
368 TIGR03375 type_I_sec_LssB type 94.3 0.045 1.2E-06 33.2 3.3 39 22-60 480-518 (694)
369 PRK00300 gmk guanylate kinase; 94.3 0.1 2.6E-06 31.1 5.0 29 30-58 4-32 (208)
370 TIGR02142 modC_ABC molybdate A 94.3 0.043 1.1E-06 33.3 3.1 26 31-56 20-46 (361)
371 cd04155 Arl3 Arl3 subfamily. 94.3 0.14 3.5E-06 30.3 5.7 70 33-111 14-87 (173)
372 cd03258 ABC_MetN_methionine_tr 94.2 0.045 1.1E-06 33.2 3.2 27 29-55 27-53 (233)
373 pfam12128 DUF3584 Protein of u 94.2 0.082 2.1E-06 31.6 4.5 33 36-69 20-52 (1192)
374 pfam03266 DUF265 Protein of un 94.2 0.048 1.2E-06 33.0 3.3 77 36-112 2-101 (168)
375 COG0194 Gmk Guanylate kinase [ 94.2 0.047 1.2E-06 33.1 3.2 28 32-59 3-30 (191)
376 PRK04182 cytidylate kinase; Pr 94.2 0.06 1.5E-06 32.4 3.8 28 34-61 1-28 (178)
377 pfam06414 Zeta_toxin Zeta toxi 94.2 0.075 1.9E-06 31.9 4.3 40 31-70 10-49 (191)
378 PRK06090 DNA polymerase III su 94.2 0.032 8.3E-07 34.1 2.4 93 24-119 13-121 (319)
379 cd01131 PilT Pilus retraction 94.2 0.067 1.7E-06 32.1 4.0 28 34-61 2-29 (198)
380 cd04114 Rab30 Rab30 subfamily. 94.2 0.16 4E-06 29.9 5.9 86 36-126 10-113 (169)
381 cd03270 ABC_UvrA_I The excisio 94.2 0.055 1.4E-06 32.7 3.6 30 29-58 17-46 (226)
382 COG3638 ABC-type phosphate/pho 94.2 0.062 1.6E-06 32.4 3.8 30 29-58 26-55 (258)
383 PRK11288 araG L-arabinose tran 94.2 0.041 1E-06 33.4 2.9 30 29-58 26-55 (501)
384 PRK10535 macrolide transporter 94.2 0.066 1.7E-06 32.2 3.9 29 28-57 29-57 (648)
385 PRK06835 DNA replication prote 94.2 0.15 3.8E-06 30.1 5.7 40 23-62 172-212 (330)
386 pfam00910 RNA_helicase RNA hel 94.1 0.099 2.5E-06 31.1 4.8 24 36-59 1-24 (105)
387 cd04138 H_N_K_Ras_like H-Ras/N 94.1 0.16 4.1E-06 29.9 5.8 70 36-112 4-79 (162)
388 cd01863 Rab18 Rab18 subfamily. 94.1 0.16 4.1E-06 29.8 5.8 60 36-99 3-65 (161)
389 TIGR03415 ABC_choXWV_ATP choli 94.1 0.055 1.4E-06 32.7 3.4 27 30-56 47-73 (382)
390 cd04107 Rab32_Rab38 Rab38/Rab3 94.1 0.2 5E-06 29.3 6.2 72 36-112 3-80 (201)
391 COG0714 MoxR-like ATPases [Gen 94.1 0.11 2.8E-06 30.9 4.9 33 29-61 39-71 (329)
392 smart00173 RAS Ras subfamily o 94.1 0.15 3.9E-06 30.0 5.6 70 36-112 3-78 (164)
393 PHA02244 ATPase-like protein 94.1 0.072 1.8E-06 32.0 3.9 60 25-89 111-176 (383)
394 COG0410 LivF ABC-type branched 94.1 0.061 1.6E-06 32.4 3.6 47 29-75 25-78 (237)
395 PRK11388 DNA-binding transcrip 94.1 0.12 3.1E-06 30.6 5.1 38 19-56 334-371 (639)
396 cd01860 Rab5_related Rab5-rela 94.1 0.18 4.5E-06 29.6 5.9 60 36-99 4-66 (163)
397 TIGR03420 DnaA_homol_Hda DnaA 94.0 0.21 5.3E-06 29.2 6.2 31 31-61 36-66 (226)
398 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 94.0 0.15 3.9E-06 30.0 5.5 85 36-125 5-107 (166)
399 cd03298 ABC_ThiQ_thiamine_tran 94.0 0.062 1.6E-06 32.4 3.5 32 29-60 20-51 (211)
400 KOG0733 consensus 94.0 0.15 3.9E-06 30.0 5.4 46 30-78 220-265 (802)
401 PRK07270 DNA polymerase III su 94.0 0.12 3E-06 30.7 4.8 136 22-158 23-192 (557)
402 PRK11432 fbpC ferric transport 93.9 0.055 1.4E-06 32.7 3.1 31 28-58 27-57 (351)
403 COG2255 RuvB Holliday junction 93.9 0.2 5.1E-06 29.3 6.0 34 32-67 51-84 (332)
404 PRK07952 DNA replication prote 93.9 0.13 3.4E-06 30.4 5.1 51 12-62 72-125 (242)
405 KOG1532 consensus 93.9 0.047 1.2E-06 33.1 2.8 41 27-72 13-53 (366)
406 PRK10436 hypothetical protein; 93.9 0.22 5.7E-06 29.0 6.2 29 31-59 213-241 (461)
407 COG4555 NatA ABC-type Na+ tran 93.9 0.077 2E-06 31.8 3.8 50 24-74 19-68 (245)
408 PRK10070 glycine betaine trans 93.9 0.061 1.5E-06 32.4 3.3 30 30-59 51-80 (400)
409 CHL00081 chlI Mg-protoporyphyr 93.8 0.18 4.7E-06 29.5 5.7 39 19-58 19-58 (347)
410 smart00174 RHO Rho (Ras homolo 93.8 0.18 4.5E-06 29.6 5.6 83 36-124 1-102 (174)
411 TIGR00955 3a01204 Pigment prec 93.8 0.035 9E-07 33.8 2.0 44 15-58 40-83 (671)
412 COG1102 Cmk Cytidylate kinase 93.8 0.064 1.6E-06 32.3 3.3 33 34-69 1-33 (179)
413 cd04117 Rab15 Rab15 subfamily. 93.8 0.18 4.5E-06 29.6 5.5 85 36-125 3-105 (161)
414 TIGR03258 PhnT 2-aminoethylpho 93.8 0.069 1.8E-06 32.1 3.4 33 28-60 26-58 (362)
415 PRK12269 bifunctional cytidyla 93.8 0.078 2E-06 31.8 3.7 38 25-62 25-63 (863)
416 COG0470 HolB ATPase involved i 93.8 0.22 5.7E-06 29.0 6.0 87 31-120 22-123 (325)
417 cd00877 Ran Ran (Ras-related n 93.8 0.22 5.7E-06 29.0 6.0 84 36-124 3-104 (166)
418 COG1341 Predicted GTPase or GT 93.8 0.17 4.3E-06 29.7 5.4 47 14-60 47-100 (398)
419 cd01864 Rab19 Rab19 subfamily. 93.8 0.2 5E-06 29.4 5.7 72 36-112 6-82 (165)
420 TIGR03185 DNA_S_dndD DNA sulfu 93.8 0.12 3E-06 30.7 4.6 31 32-62 27-57 (650)
421 PRK05564 DNA polymerase III su 93.8 0.12 3.1E-06 30.6 4.6 40 22-61 12-54 (313)
422 COG1124 DppF ABC-type dipeptid 93.8 0.073 1.9E-06 31.9 3.5 30 28-57 28-57 (252)
423 TIGR03265 PhnT2 putative 2-ami 93.8 0.069 1.8E-06 32.1 3.4 31 29-59 26-56 (353)
424 cd04122 Rab14 Rab14 subfamily. 93.8 0.16 4.2E-06 29.8 5.3 60 36-99 5-67 (166)
425 PRK12727 flagellar biosynthesi 93.8 0.075 1.9E-06 31.8 3.6 84 31-115 346-435 (557)
426 cd00157 Rho Rho (Ras homology) 93.7 0.18 4.5E-06 29.6 5.4 58 36-99 3-64 (171)
427 COG4559 ABC-type hemin transpo 93.7 0.078 2E-06 31.8 3.6 36 26-61 20-55 (259)
428 cd04137 RheB Rheb (Ras Homolog 93.7 0.21 5.5E-06 29.1 5.8 71 35-112 3-79 (180)
429 cd04176 Rap2 Rap2 subgroup. T 93.7 0.29 7.3E-06 28.3 6.5 70 36-112 4-79 (163)
430 PRK03839 putative kinase; Prov 93.7 0.084 2.2E-06 31.6 3.7 83 34-132 1-87 (180)
431 PRK00698 tmk thymidylate kinas 93.6 0.081 2.1E-06 31.7 3.6 31 32-62 2-32 (204)
432 COG0593 DnaA ATPase involved i 93.6 0.26 6.7E-06 28.6 6.2 120 13-133 92-243 (408)
433 TIGR03346 chaperone_ClpB ATP-d 93.6 0.23 5.8E-06 28.9 5.9 30 31-60 593-622 (852)
434 COG1484 DnaC DNA replication p 93.6 0.23 5.8E-06 29.0 5.8 46 16-61 88-133 (254)
435 cd04159 Arl10_like Arl10-like 93.6 0.26 6.6E-06 28.6 6.1 68 36-111 2-73 (159)
436 TIGR00968 3a0106s01 sulfate AB 93.6 0.069 1.8E-06 32.1 3.2 32 29-61 22-53 (241)
437 cd04135 Tc10 TC10 subfamily. 93.6 0.24 6.1E-06 28.8 5.9 83 36-124 3-104 (174)
438 cd01868 Rab11_like Rab11-like. 93.6 0.23 5.8E-06 28.9 5.8 84 36-124 6-107 (165)
439 pfam03029 ATP_bind_1 Conserved 93.6 0.05 1.3E-06 32.9 2.4 21 39-59 2-22 (234)
440 cd04108 Rab36_Rab34 Rab34/Rab3 93.5 0.22 5.7E-06 29.0 5.7 72 36-112 3-79 (170)
441 PRK13341 recombination factor 93.5 0.083 2.1E-06 31.6 3.5 82 26-112 43-141 (726)
442 COG0542 clpA ATP-binding subun 93.5 0.11 2.8E-06 30.9 4.1 46 16-61 497-549 (786)
443 cd01129 PulE-GspE PulE/GspE Th 93.5 0.25 6.4E-06 28.7 5.9 29 31-59 78-106 (264)
444 COG3842 PotA ABC-type spermidi 93.5 0.089 2.3E-06 31.4 3.6 30 27-56 25-54 (352)
445 cd04139 RalA_RalB RalA/RalB su 93.5 0.24 6.2E-06 28.8 5.8 70 36-112 3-78 (164)
446 COG4608 AppF ABC-type oligopep 93.5 0.078 2E-06 31.8 3.3 32 29-60 35-66 (268)
447 COG0488 Uup ATPase components 93.5 0.098 2.5E-06 31.2 3.8 39 22-60 337-375 (530)
448 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 93.5 0.28 7.1E-06 28.4 6.1 71 35-111 7-82 (182)
449 PRK11608 pspF phage shock prot 93.5 0.17 4.3E-06 29.7 5.0 41 16-56 12-52 (325)
450 COG1129 MglA ABC-type sugar tr 93.5 0.15 3.8E-06 30.1 4.7 30 29-58 30-59 (500)
451 pfam06068 TIP49 TIP49 C-termin 93.5 0.28 7.1E-06 28.4 6.1 38 23-60 36-77 (395)
452 TIGR02528 EutP ethanolamine ut 93.4 0.042 1.1E-06 33.4 1.8 22 35-56 2-23 (144)
453 COG1936 Predicted nucleotide k 93.4 0.087 2.2E-06 31.5 3.4 84 35-133 2-91 (180)
454 PRK06217 hypothetical protein; 93.4 0.098 2.5E-06 31.2 3.6 27 35-61 3-29 (185)
455 PRK13695 putative NTPase; Prov 93.4 0.085 2.2E-06 31.5 3.3 79 34-112 4-105 (174)
456 TIGR00455 apsK adenylylsulfate 93.4 0.079 2E-06 31.7 3.1 34 29-62 15-48 (187)
457 PRK08084 DNA replication initi 93.4 0.26 6.7E-06 28.6 5.8 31 31-61 43-73 (235)
458 cd04116 Rab9 Rab9 subfamily. 93.4 0.26 6.7E-06 28.6 5.8 72 36-112 8-84 (170)
459 PRK05537 bifunctional sulfate 93.4 0.14 3.6E-06 30.2 4.4 40 21-60 376-419 (568)
460 cd02029 PRK_like Phosphoribulo 93.4 0.073 1.9E-06 31.9 2.9 27 35-61 1-27 (277)
461 PRK09518 bifunctional cytidyla 93.4 0.11 2.8E-06 30.8 3.9 30 32-61 3-32 (714)
462 cd04140 ARHI_like ARHI subfami 93.3 0.28 7.2E-06 28.4 5.9 70 36-112 4-79 (165)
463 PRK11034 clpA ATP-dependent Cl 93.3 0.26 6.7E-06 28.6 5.8 28 31-58 486-513 (758)
464 cd02021 GntK Gluconate kinase 93.3 0.088 2.2E-06 31.4 3.3 27 35-61 1-27 (150)
465 cd04141 Rit_Rin_Ric Rit/Rin/Ri 93.3 0.33 8.4E-06 28.0 6.2 70 36-112 5-80 (172)
466 PRK12723 flagellar biosynthesi 93.3 0.19 4.9E-06 29.4 5.0 85 32-117 173-265 (388)
467 cd01893 Miro1 Miro1 subfamily. 93.3 0.3 7.6E-06 28.3 6.0 60 36-99 3-63 (166)
468 cd01394 radB RadB. The archaea 93.3 0.15 3.9E-06 30.0 4.4 40 21-60 7-46 (218)
469 cd01861 Rab6 Rab6 subfamily. 93.2 0.26 6.6E-06 28.6 5.6 59 36-98 3-64 (161)
470 PRK00771 signal recognition pa 93.2 0.073 1.9E-06 31.9 2.8 31 31-61 95-125 (433)
471 TIGR01842 type_I_sec_PrtD type 93.2 0.088 2.2E-06 31.5 3.2 52 23-90 346-397 (556)
472 PRK11889 flhF flagellar biosyn 93.2 0.13 3.3E-06 30.4 4.0 50 33-98 241-290 (436)
473 PRK13477 bifunctional pantoate 93.2 0.11 2.9E-06 30.8 3.7 106 31-136 282-432 (512)
474 pfam00308 Bac_DnaA Bacterial d 93.2 0.29 7.5E-06 28.3 5.8 38 20-59 20-60 (219)
475 TIGR03263 guanyl_kin guanylate 93.2 0.2 5E-06 29.4 4.9 25 33-57 1-25 (180)
476 pfam05673 DUF815 Protein of un 93.2 0.29 7.4E-06 28.3 5.8 32 31-62 51-82 (248)
477 PRK09112 DNA polymerase III su 93.1 0.18 4.6E-06 29.6 4.7 37 23-59 32-71 (352)
478 cd01870 RhoA_like RhoA-like su 93.1 0.28 7.1E-06 28.4 5.6 84 35-124 3-105 (175)
479 cd00984 DnaB_C DnaB helicase C 93.1 0.1 2.6E-06 31.1 3.3 32 28-59 8-39 (242)
480 PRK12377 putative replication 93.1 0.34 8.8E-06 27.9 6.0 51 12-62 77-130 (248)
481 cd04110 Rab35 Rab35 subfamily. 93.1 0.3 7.6E-06 28.2 5.7 60 36-99 9-71 (199)
482 PRK05642 DNA replication initi 93.1 0.32 8.2E-06 28.0 5.9 44 17-60 27-72 (234)
483 COG1224 TIP49 DNA helicase TIP 93.1 0.14 3.6E-06 30.2 4.0 30 31-60 63-92 (450)
484 COG3839 MalK ABC-type sugar tr 93.1 0.12 2.9E-06 30.7 3.6 32 28-59 24-55 (338)
485 PRK05342 clpX ATP-dependent pr 93.0 0.12 3E-06 30.7 3.6 37 34-71 110-146 (411)
486 COG4615 PvdE ABC-type sideroph 93.0 0.096 2.4E-06 31.2 3.2 27 30-56 346-372 (546)
487 cd04175 Rap1 Rap1 subgroup. T 93.0 0.29 7.4E-06 28.3 5.6 70 36-112 4-79 (164)
488 PRK10246 exonuclease subunit S 93.0 0.14 3.6E-06 30.2 4.0 31 30-60 27-57 (1047)
489 COG2274 SunT ABC-type bacterio 93.0 0.11 2.8E-06 30.8 3.4 35 25-59 491-525 (709)
490 cd04132 Rho4_like Rho4-like su 93.0 0.36 9.1E-06 27.8 6.1 58 36-99 3-65 (187)
491 PRK09361 radB DNA repair and r 93.0 0.16 4.2E-06 29.8 4.3 37 21-57 11-47 (224)
492 TIGR01188 drrA daunorubicin re 93.0 0.069 1.8E-06 32.1 2.4 63 30-92 18-102 (343)
493 cd01867 Rab8_Rab10_Rab13_like 93.0 0.3 7.6E-06 28.2 5.6 83 36-123 6-106 (167)
494 PTZ00132 GTP-binding nuclear p 93.0 0.34 8.5E-06 27.9 5.9 74 34-112 7-85 (209)
495 pfam01202 SKI Shikimate kinase 93.0 0.074 1.9E-06 31.9 2.5 20 42-61 1-20 (158)
496 PRK09435 arginine/ornithine tr 93.0 0.29 7.5E-06 28.3 5.6 32 30-61 46-77 (325)
497 pfam07724 AAA_2 AAA domain (Cd 93.0 0.16 4.1E-06 29.9 4.2 30 32-61 2-31 (168)
498 CHL00176 ftsH cell division pr 93.0 0.074 1.9E-06 31.9 2.5 40 31-71 208-247 (631)
499 cd04145 M_R_Ras_like M-Ras/R-R 92.9 0.27 7E-06 28.5 5.4 72 34-112 3-80 (164)
500 TIGR00972 3a0107s01c2 phosphat 92.9 0.11 2.7E-06 31.0 3.3 28 29-56 23-50 (248)
No 1
>PRK10646 putative ATPase; Provisional
Probab=100.00 E-value=0 Score=308.54 Aligned_cols=147 Identities=35% Similarity=0.637 Sum_probs=134.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC-CCCCEEEE
Q ss_conf 48999829989999999999984589969999878786889999999976078885302452020110037-88608999
Q gi|254780824|r 7 HLTVIPIPNEKNTICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD-ASIPVAHF 85 (162)
Q Consensus 7 ~~~~i~l~~~~~t~~la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~-~~~~i~H~ 85 (162)
+-.+|.++||++|.+||+.||+.+++|+||+|.||||||||||+|+++++||.++. |+||||+|+|+|+ ++.+++|+
T Consensus 2 ~~~~i~L~de~~T~~lg~~la~~l~~g~vi~L~G~LGaGKTtf~r~i~~~lg~~~~--V~SPTf~lv~~Y~~~~~~~~H~ 79 (153)
T PRK10646 2 MNRVIPLPDEQATLDLGERVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGHQGN--VKSPTYTLVEPYTLDNLMVYHF 79 (153)
T ss_pred CCCEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCC--CCCCCEEEEEEECCCCCEEEEE
T ss_conf 76279898999999999999976899979999888878999999999998499786--2699764799732899338999
Q ss_pred EEECCCCHHHHHCCCHHHHCC-CCEEEEECHHHHHCCCCCCEEEEEEEECCCEEEEEEEECCHH-HHHHHHH
Q ss_conf 865178977753058367508-978999985563204995409999987398769999958608-9999999
Q gi|254780824|r 86 DFYRLSSHQEVVELGFDEILN-ERICIIEWPEIGRSLLPKKYIDIHLSQGKTGRKATISAERWI-ISHINQM 155 (162)
Q Consensus 86 DlYRL~~~~E~~~lg~~e~~~-~~i~lIEWpe~~~~~lp~~~i~I~i~~~~~~R~i~i~~~~~~-~~~l~~~ 155 (162)
|||||++++|++++|++|++. ++||+|||||++.+++|++++.|+|++.++.|.++|++.+.. ...++++
T Consensus 80 DlYRl~~~~e~~~lg~~e~~~~~~i~lIEWpe~~~~~lP~~~l~I~i~~~~~~R~~~i~a~~~~g~~~l~~L 151 (153)
T PRK10646 80 DLYRLADPEELEFMGIRDYFANDAICLVEWPQQGTGVLPDPDVEIHIDYQAQGREARVSAVSSAGELLLARL 151 (153)
T ss_pred EEECCCCHHHHHHCCCHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCHHHHHHHHHH
T ss_conf 853469988998778788857996999989765101088476899999859984799998898999999986
No 2
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=100.00 E-value=2.8e-45 Score=294.33 Aligned_cols=140 Identities=45% Similarity=0.745 Sum_probs=129.6
Q ss_pred EEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC-CCCCEEEEEEE
Q ss_conf 99829989999999999984589969999878786889999999976078885302452020110037-88608999865
Q gi|254780824|r 10 VIPIPNEKNTICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD-ASIPVAHFDFY 88 (162)
Q Consensus 10 ~i~l~~~~~t~~la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~-~~~~i~H~DlY 88 (162)
.+.++|+++|.+||+.||+.+++|+||+|+||||||||||+||++++||++. .|+||||+|||+|+ ++.++||+|+|
T Consensus 2 ~~~~~~~~~t~~lg~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~~~--~V~SPTFtlv~~Y~~~~~~lyH~DlY 79 (149)
T COG0802 2 EIILPDEEATLALGERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLGVDG--NVKSPTFTLVEEYEEGRLPLYHFDLY 79 (149)
T ss_pred EEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCC--CCCCCCEEEEHHHCCCCCCEEEEEEE
T ss_conf 3772899999999999996578998899977876885999999999749997--52498761012113799877998611
Q ss_pred CCCCHHHHHCCCHHHHCC-CCEEEEECHHHHHCCCCCCEEEEEEEEC-CCEEEEEEEECCHHHHH
Q ss_conf 178977753058367508-9789999855632049954099999873-98769999958608999
Q gi|254780824|r 89 RLSSHQEVVELGFDEILN-ERICIIEWPEIGRSLLPKKYIDIHLSQG-KTGRKATISAERWIISH 151 (162)
Q Consensus 89 RL~~~~E~~~lg~~e~~~-~~i~lIEWpe~~~~~lp~~~i~I~i~~~-~~~R~i~i~~~~~~~~~ 151 (162)
|+++++|++++|++|++. ++||+||||+++.+.+|..++.|+|.+. ++.|++++.+.+...+.
T Consensus 80 Rl~d~ee~~~lg~~e~~~~~gv~lIEW~e~~~~~lp~~~l~I~i~~~~~~~R~~~~~~~~~~~~~ 144 (149)
T COG0802 80 RLSDPEELDELGLDEYFDGDGICLIEWPERLAELLPDADLEITITYEGDDGRRAEITAHGERGEE 144 (149)
T ss_pred CCCCHHHHHHCCHHHHHCCCCEEEEECCCHHCCCCCCCEEEEEEEEECCCCEEEEEEEECCCHHH
T ss_conf 25886775666988974778489998741121589876289999982488569999940101887
No 3
>TIGR00150 TIGR00150 conserved hypothetical protein TIGR00150; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements . .
Probab=100.00 E-value=1.8e-44 Score=289.17 Aligned_cols=131 Identities=39% Similarity=0.726 Sum_probs=123.6
Q ss_pred CCCH-HHHHHHHHHHHHH-----CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC-CCCCEEEE
Q ss_conf 2998-9999999999984-----589969999878786889999999976078885302452020110037-88608999
Q gi|254780824|r 13 IPNE-KNTICLGRHLASI-----LRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD-ASIPVAHF 85 (162)
Q Consensus 13 l~~~-~~t~~la~~la~~-----l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~-~~~~i~H~ 85 (162)
++|| ++|.++|+++|+. +..+.||+|.||||||||||+||++++||++. +|+||||||||+|+ ++.++||+
T Consensus 2 ~pdEt~a~~~~~~~~a~~llklh~d~~~v~~L~GDlGaGKTtl~~G~~~~LG~~~--~~~SPTftlv~~Y~~~~~~~YH~ 79 (147)
T TIGR00150 2 LPDETKAMDKLGKAFAKPLLKLHLDLGTVVLLKGDLGAGKTTLVKGLLQGLGITG--NVTSPTFTLVNEYNEGNLPLYHF 79 (147)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEE--EEECCCCCEEEEEECCCCCEEEE
T ss_conf 7126789999999999999985199753899732346665899999998379226--88579321010011378515333
Q ss_pred EEECCCCHHHHHCCCHHHHCC-C----CEEEEECHHHHHCCCC-CCEEEEEEEECCC-EEEEEEEEC
Q ss_conf 865178977753058367508-9----7899998556320499-5409999987398-769999958
Q gi|254780824|r 86 DFYRLSSHQEVVELGFDEILN-E----RICIIEWPEIGRSLLP-KKYIDIHLSQGKT-GRKATISAE 145 (162)
Q Consensus 86 DlYRL~~~~E~~~lg~~e~~~-~----~i~lIEWpe~~~~~lp-~~~i~I~i~~~~~-~R~i~i~~~ 145 (162)
||||+++++|++.+|+++|+. + +||+||||++..+.+| +.++.|+|.+.++ +|.+++.|-
T Consensus 80 DlYR~~~~~E~E~~g~~~y~~~~DfPlgI~lvEWp~~~~~~lPK~~~l~i~~~~~~~d~R~~~l~a~ 146 (147)
T TIGR00150 80 DLYRLADPEELELLGLEEYFEGDDFPLGICLVEWPEEGLEILPKDEDLQIKIKYVGDDGREIELTAV 146 (147)
T ss_pred EEECCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECHHCCCCCCCCCCEEEEEEEECCCCCEEEEEEE
T ss_conf 3420577234454124888446998568999841200167688653037999987288748988840
No 4
>pfam02367 UPF0079 Uncharacterized P-loop hydrolase UPF0079. This uncharacterized family contains a P-loop.
Probab=100.00 E-value=3.2e-43 Score=281.70 Aligned_cols=120 Identities=38% Similarity=0.691 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC-CCCCEEEEEEECCCCHHHHH
Q ss_conf 99999999984589969999878786889999999976078885302452020110037-88608999865178977753
Q gi|254780824|r 19 TICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD-ASIPVAHFDFYRLSSHQEVV 97 (162)
Q Consensus 19 t~~la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~-~~~~i~H~DlYRL~~~~E~~ 97 (162)
|.+||++||+.|++|++|+|.||||||||||||+++++||+.+ +|+||||+|+|+|+ ++.+++|+|||||++++|++
T Consensus 1 T~~lg~~ia~~l~~G~vi~L~G~LGaGKTtfvr~i~~~lg~~~--~V~SPTF~lv~~Y~~~~~~i~H~DlYRl~~~~e~~ 78 (123)
T pfam02367 1 TLNLGKRLAQLLKAGDVVLLSGDLGAGKTTFVRGLAKGLGITG--NVTSPTFTLVNVYEPGKLPLYHYDLYRLEDPEELE 78 (123)
T ss_pred CHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCC--CCCCCCEEEEEEECCCCCEEEEEEEECCCCHHHHH
T ss_conf 9899999997689997999988877889999999999859988--73799558899970899639999833269977898
Q ss_pred CCCHHHHC-CCCEEEEECHHHHHCCCCCCEEEEEEEEC-CCEEEE
Q ss_conf 05836750-89789999855632049954099999873-987699
Q gi|254780824|r 98 ELGFDEIL-NERICIIEWPEIGRSLLPKKYIDIHLSQG-KTGRKA 140 (162)
Q Consensus 98 ~lg~~e~~-~~~i~lIEWpe~~~~~lp~~~i~I~i~~~-~~~R~i 140 (162)
++|++|++ ++++++|||||++.+.+|++++.|+|++. ++.|+|
T Consensus 79 ~lg~~e~~~~~~i~~IEWpe~~~~~lp~~~l~i~i~~~~~~~R~I 123 (123)
T pfam02367 79 LLGILDYALEDGIILVEWPERLPEILPEDRLEIRIKRLDDGRREI 123 (123)
T ss_pred HCCCHHHHCCCCEEEEECCHHHHHHCCCCCEEEEEEECCCCCEEC
T ss_conf 778656626998999999233220088577899999879994489
No 5
>pfam07693 KAP_NTPase KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.
Probab=97.37 E-value=0.00058 Score=44.63 Aligned_cols=62 Identities=24% Similarity=0.297 Sum_probs=45.6
Q ss_pred HHHHHHHHHC-----CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCHHH
Q ss_conf 9999999845-----89969999878786889999999976078885302452020110037886089998651789777
Q gi|254780824|r 21 CLGRHLASIL-----RLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDASIPVAHFDFYRLSSHQE 95 (162)
Q Consensus 21 ~la~~la~~l-----~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~~~~i~H~DlYRL~~~~E 95 (162)
.+|+.||+.+ ++|.+|.+.|+=|+|||+|++-+.+.|.-.. ....+.+||.++-++.++
T Consensus 3 ~~a~~la~~i~~~~~~~~~vIgl~G~WGsGKTs~l~~~~~~L~~~~----------------~~~~~v~fn~W~~~~~d~ 66 (301)
T pfam07693 3 KYAENLAKLLVEPSLAPGFVIGLYGAWGSGKTSFLNLLEDELKEFP----------------EEFHIVYFDPWLFSGQDD 66 (301)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC----------------CCCEEEEEECCCCCCCCC
T ss_conf 7899999999577789997999989899999999999999986136----------------882699981230479678
Q ss_pred HHC
Q ss_conf 530
Q gi|254780824|r 96 VVE 98 (162)
Q Consensus 96 ~~~ 98 (162)
+..
T Consensus 67 ~~~ 69 (301)
T pfam07693 67 AVA 69 (301)
T ss_pred HHH
T ss_conf 999
No 6
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=97.27 E-value=0.00023 Score=47.05 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=24.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 999987878688999999997607888
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
+|+..|.+|||||||++.+++.+|..-
T Consensus 1 iI~IEGnIG~GKTTl~~~La~~l~~~~ 27 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKY 27 (219)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 989967856799999999999859821
No 7
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.25 E-value=0.001 Score=43.17 Aligned_cols=59 Identities=14% Similarity=0.344 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC--CCCCCHHH
Q ss_conf 299899999999999845899699998787868899999999760788853--02452020
Q gi|254780824|r 13 IPNEKNTICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDAL--EVLSPTFT 71 (162)
Q Consensus 13 l~~~~~t~~la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~--~V~SPTF~ 71 (162)
-.++.-.++++.-....-....++.+.||.|+||||++|.+++.+..+... .+..|+++
T Consensus 23 y~s~~h~~al~~L~~~l~~~~g~~lltGe~GtGKTtllr~l~~~l~~~~~~~~~i~~~~l~ 83 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVD 83 (269)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 4786699999999999964896599972998988999999998459345489997699999
No 8
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.10 E-value=0.00072 Score=44.06 Aligned_cols=43 Identities=23% Similarity=0.330 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 9999999998458996999987878688999999997607888
Q gi|254780824|r 19 TICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 19 t~~la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
+...+..|..+++.+.-|+..|+.|||||||.++++..+....
T Consensus 11 ~~~~~~~L~~~v~~~~nIlIsG~tGSGKTTll~al~~~i~~~~ 53 (186)
T cd01130 11 SPLQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDE 53 (186)
T ss_pred CHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf 9999999999998599899989999989999999996133456
No 9
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.07 E-value=0.0032 Score=40.10 Aligned_cols=79 Identities=23% Similarity=0.290 Sum_probs=56.4
Q ss_pred HHHHHHHHHCCCC---CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC-------CC-CCEEEEEEEC
Q ss_conf 9999999845899---69999878786889999999976078885302452020110037-------88-6089998651
Q gi|254780824|r 21 CLGRHLASILRLG---DCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD-------AS-IPVAHFDFYR 89 (162)
Q Consensus 21 ~la~~la~~l~~g---~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~-------~~-~~i~H~DlYR 89 (162)
.+.+.|.+.+..| .-.+|.|.=|+||||.+|-++++|.+.....+.-||...|+.-+ ++ ..++-+|.--
T Consensus 30 ~~~~~l~~~~~~~~~~~a~l~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~daas 109 (600)
T PRK09111 30 AMVRTLRNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYKGPDGVGGPTIDPCGVGEHCQAIMEGRHVDVIEMDAAS 109 (600)
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCC
T ss_conf 99999999997298420476457898789999999999966988766689988989988658988668998758851554
Q ss_pred CCCHHHHHCC
Q ss_conf 7897775305
Q gi|254780824|r 90 LSSHQEVVEL 99 (162)
Q Consensus 90 L~~~~E~~~l 99 (162)
=.+.+++.+|
T Consensus 110 ~~~v~~~r~~ 119 (600)
T PRK09111 110 HTGVDDIREI 119 (600)
T ss_pred CCCHHHHHHH
T ss_conf 5788899999
No 10
>PRK06696 uridine kinase; Validated
Probab=96.93 E-value=0.0028 Score=40.52 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHCCC-CCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 9999999999984589-96999987878688999999997607888
Q gi|254780824|r 17 KNTICLGRHLASILRL-GDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 17 ~~t~~la~~la~~l~~-g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
+-+.+++..++..-.. .-+|...|.=|||||||++.++..|...+
T Consensus 9 ~~~~~~~~~i~~~~p~rpl~VgIdG~~gSGKTTlA~~La~~L~~~G 54 (227)
T PRK06696 9 QVVKEIANHILTLNLTRPLRVAIDGITASGKTTFANELAEEIKKRG 54 (227)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 8999999999835999868999778998787999999999997469
No 11
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.91 E-value=0.0057 Score=38.61 Aligned_cols=135 Identities=19% Similarity=0.211 Sum_probs=77.9
Q ss_pred HHHHHHHHCCCC---CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC-CCCCEEEEEEECCCCHHHHH
Q ss_conf 999999845899---69999878786889999999976078885302452020110037-88608999865178977753
Q gi|254780824|r 22 LGRHLASILRLG---DCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD-ASIPVAHFDFYRLSSHQEVV 97 (162)
Q Consensus 22 la~~la~~l~~g---~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~-~~~~i~H~DlYRL~~~~E~~ 97 (162)
..+.|.+.+..| ...+|.|+=|+||||.+|.++++|.+.... ..++.-..|.... .+..+.-+|.=.-.+.+++.
T Consensus 26 Vv~tL~nAI~~gRIaHAYLF~GPRGvGKTT~ARIfAKaLNC~~~~-d~~~pC~~C~~~~~~s~DViEIDAASn~gVDdIR 104 (718)
T PRK07133 26 IIETLKNIIKSGKISHAYLFSGPHGTGKTSVAKIFANALNCSHKT-DLIEPCQNCIENFNNNLDIIEMDAASNNGVDEIR 104 (718)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC-CCCCCCCCHHHCCCCCCCEEEECCCCCCCHHHHH
T ss_conf 999999999749975058623899868899999999996799999-9999770214304789873775455668889999
Q ss_pred CCCHHHH--CC-C---CEEEEECHHHHHC--------C---CCCCEEEEEEEECCC-------EEEEEEE----ECCHHH
Q ss_conf 0583675--08-9---7899998556320--------4---995409999987398-------7699999----586089
Q gi|254780824|r 98 ELGFDEI--LN-E---RICIIEWPEIGRS--------L---LPKKYIDIHLSQGKT-------GRKATIS----AERWII 149 (162)
Q Consensus 98 ~lg~~e~--~~-~---~i~lIEWpe~~~~--------~---lp~~~i~I~i~~~~~-------~R~i~i~----~~~~~~ 149 (162)
++ ++.. .. . .|.+|.=++++.. . -|+..+.|-.+...+ +|--++. ....+.
T Consensus 105 eL-ie~v~y~P~~gkYKVyIIDEvHMLS~~AfNALLKtLEEPP~hvvFILaTTep~KIP~TIlSRCQrFdFkrI~~~~I~ 183 (718)
T PRK07133 105 EL-RENVKNLPQISKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTDVQKIPLTILSRVQRFNFRRISEDVIV 183 (718)
T ss_pred HH-HHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCHHHCCHHHHHCCEEEECCCCCHHHHH
T ss_conf 99-99825588778724999966200799999999985027987827999708825484877412203358889999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999998
Q gi|254780824|r 150 SHINQMNRS 158 (162)
Q Consensus 150 ~~l~~~~~~ 158 (162)
.+|..+..+
T Consensus 184 ~~L~~I~~k 192 (718)
T PRK07133 184 HQLENILEK 192 (718)
T ss_pred HHHHHHHHH
T ss_conf 999999998
No 12
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=96.89 E-value=0.002 Score=41.43 Aligned_cols=30 Identities=23% Similarity=0.260 Sum_probs=27.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 899699998787868899999999760788
Q gi|254780824|r 31 RLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 31 ~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
+|=..++|.|+-|+|||.++|.+|+.||+.
T Consensus 525 kP~GSFLF~GPTGVGKTElak~LA~~LGv~ 554 (774)
T TIGR02639 525 KPVGSFLFVGPTGVGKTELAKQLAEELGVH 554 (774)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHCCH
T ss_conf 816888864798962578899999970820
No 13
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=96.88 E-value=0.0009 Score=43.47 Aligned_cols=30 Identities=37% Similarity=0.458 Sum_probs=27.4
Q ss_pred CCCC-EEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 8996-99998787868899999999760788
Q gi|254780824|r 31 RLGD-CLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 31 ~~g~-ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
..|. |+||.|+=|+|||.+.|+||+|||-.
T Consensus 447 ~~GpqIlClvGPPGVGKTSlg~SIA~ALnRk 477 (941)
T TIGR00763 447 MKGPQILCLVGPPGVGKTSLGKSIAKALNRK 477 (941)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCE
T ss_conf 8887678720726954222789999996880
No 14
>TIGR02673 FtsE cell division ATP-binding protein FtsE; InterPro: IPR005286 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=96.86 E-value=0.00093 Score=43.38 Aligned_cols=32 Identities=31% Similarity=0.465 Sum_probs=28.5
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+++|+.+||.|.=|||||||-|-|+.++-..
T Consensus 24 ~i~kG~F~FLtG~SGAGKttLLKLl~~~~~P~ 55 (215)
T TIGR02673 24 HIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS 55 (215)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 75277407887277861789999998526987
No 15
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.79 E-value=0.0025 Score=40.78 Aligned_cols=41 Identities=15% Similarity=0.213 Sum_probs=34.4
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 99999998458996999987878688999999997607888
Q gi|254780824|r 21 CLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 21 ~la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
.++..|..++..+.-|+..|.-|||||||.++++..+...+
T Consensus 148 ~~~~fL~~aV~~r~NilI~G~TgSGKTTll~aL~~~ip~~e 188 (332)
T PRK13900 148 KIKEFLEHAVISKKNIIISGGTSTGKTTFTNAALREIPAIE 188 (332)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCC
T ss_conf 79999999986487199988889889999999983589535
No 16
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.76 E-value=0.0029 Score=40.42 Aligned_cols=31 Identities=32% Similarity=0.329 Sum_probs=28.1
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 5899699998787868899999999760788
Q gi|254780824|r 30 LRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 30 l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
-..|.|+||.|+=|.|||.++|+++++||-+
T Consensus 346 ~~kg~IlclvGpPGvGKTSl~~sIA~al~r~ 376 (784)
T PRK10787 346 KIKGPILCLVGPPGVGKTSLGQSIAKATGRK 376 (784)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 6778779964699877246999999985898
No 17
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=96.74 E-value=0.0013 Score=42.58 Aligned_cols=27 Identities=30% Similarity=0.539 Sum_probs=24.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 999987878688999999997607888
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
+|.+.|..||||||+++.+.+.++..-
T Consensus 1 lI~iEG~iGsGKSTl~~~L~~~~~~~~ 27 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEV 27 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCEE
T ss_conf 989988888889999999999669948
No 18
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.72 E-value=0.0071 Score=38.06 Aligned_cols=90 Identities=19% Similarity=0.274 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHCC----------CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC-CCCCEEE
Q ss_conf 8999999999998458----------9969999878786889999999976078885302452020110037-8860899
Q gi|254780824|r 16 EKNTICLGRHLASILR----------LGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD-ASIPVAH 84 (162)
Q Consensus 16 ~~~t~~la~~la~~l~----------~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~-~~~~i~H 84 (162)
+.....+...|++.+. .+.|++|.|+-|+||||.+--++..+... |. .+..+..
T Consensus 167 ~~~~~~l~~~L~~~i~~~~~~~~~~~~~~vi~lvGPTGVGKTTTiAKLAa~~~l~---------------~~~~~V~lIT 231 (282)
T TIGR03499 167 ESAWRWLREALENMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLE---------------HGKKKVALIT 231 (282)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH---------------CCCCCEEEEE
T ss_conf 8999999999996477788765544567279997788875788999999999997---------------3899679998
Q ss_pred EEEECCCCHHHHHCCCHHHHCCCCEEEEECHHHHHCCC
Q ss_conf 98651789777530583675089789999855632049
Q gi|254780824|r 85 FDFYRLSSHQEVVELGFDEILNERICIIEWPEIGRSLL 122 (162)
Q Consensus 85 ~DlYRL~~~~E~~~lg~~e~~~~~i~lIEWpe~~~~~l 122 (162)
+|-||+...+.+.. +-+.++=.+.+|.=|+-+...+
T Consensus 232 ~DtyRigA~eQLk~--ya~il~vp~~vv~~~~~l~~~l 267 (282)
T TIGR03499 232 TDTYRIGAVEQLKT--YAKILGVPVKVARDPKELAKAL 267 (282)
T ss_pred ECCCCHHHHHHHHH--HHHHHCCEEEEECCHHHHHHHH
T ss_conf 07776789999999--9999597489939999999999
No 19
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=96.72 E-value=0.0031 Score=40.26 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 999999999984589969999878786889999999976078
Q gi|254780824|r 18 NTICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 18 ~t~~la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
.+..++..|..+...+..|+..|.-|||||||.++++..+..
T Consensus 124 ~~~~~~~~L~~~v~~~~~ilIsG~TGSGKTT~l~all~~i~~ 165 (283)
T pfam00437 124 FDADIAEFLRQAVQARGNILVSGGTGSGKTTLLYALLNEINT 165 (283)
T ss_pred CHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 859999999999981975999889999889999999984087
No 20
>PRK07667 uridine kinase; Provisional
Probab=96.66 E-value=0.0024 Score=40.92 Aligned_cols=31 Identities=16% Similarity=0.148 Sum_probs=26.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 8996999987878688999999997607888
Q gi|254780824|r 31 RLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 31 ~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
.+.-+|...|.=|||||||++.+++.|+..+
T Consensus 12 ~~r~iIgIaG~sgSGKTTla~~L~~~l~~~~ 42 (190)
T PRK07667 12 ENRFILGIDGLSRSGKTTFVANLKENMKQEG 42 (190)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9869999779897889999999999986659
No 21
>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.65 E-value=0.0061 Score=38.44 Aligned_cols=51 Identities=25% Similarity=0.305 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHCCC----CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 89999999999984589----96999987878688999999997607888530245202011
Q gi|254780824|r 16 EKNTICLGRHLASILRL----GDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLV 73 (162)
Q Consensus 16 ~~~t~~la~~la~~l~~----g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~ 73 (162)
++...+|...+-..... ..|++|.|+.|+||+||++.+-++|-. .|.|+|-
T Consensus 64 e~~i~~iV~~~ksAA~g~e~~kqIllL~GPVGsGKSsl~e~LK~glE~-------y~~Y~i~ 118 (358)
T pfam08298 64 EETIERIVNYFRHAAQGLEERKQILYLLGPVGGGKSSLAERLKKLLEL-------VPIYALK 118 (358)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC-------CCEEEEC
T ss_conf 999999999999997236721058999778987758999999987205-------8648844
No 22
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.63 E-value=0.0022 Score=41.17 Aligned_cols=43 Identities=21% Similarity=0.357 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 9999999998458996999987878688999999997607888
Q gi|254780824|r 19 TICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 19 t~~la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
...|.+.|+.-+++|.++++.|+-|+|||+|++-++.+.-.++
T Consensus 10 ~d~ld~~lggGip~gs~~li~G~~GtGKsi~~~~~~~~~l~~g 52 (230)
T PRK08533 10 GDELHKRLGGGIPFGSIILIEGDESTGKSILSQRLAYGFLQNG 52 (230)
T ss_pred CHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 1357887178988984899986899878999999999998789
No 23
>PRK06547 hypothetical protein; Provisional
Probab=96.60 E-value=0.0062 Score=38.42 Aligned_cols=32 Identities=31% Similarity=0.356 Sum_probs=24.4
Q ss_pred HHHHCCCC--CEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99845899--699998787868899999999760
Q gi|254780824|r 26 LASILRLG--DCLTLSGDLGSGKSFLARSIIRFL 57 (162)
Q Consensus 26 la~~l~~g--~ii~L~GdLGaGKTtfvr~i~~~l 57 (162)
++..+-.| -+|+..|.=|||||||+..++..+
T Consensus 6 ~~~~~~~g~~~iVaIDG~sGaGKTTLA~~La~~~ 39 (184)
T PRK06547 6 VAARLCGGDMITVLIDGRSGSGKTTLAGELAACW 39 (184)
T ss_pred HHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 9998559976999986899888899999999745
No 24
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=96.60 E-value=0.002 Score=41.35 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=26.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC
Q ss_conf 9999878786889999999976078885302452020110037
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD 77 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~ 77 (162)
|..+.|-||||||||.+.+++.... + --.-.|+|++.
T Consensus 2 v~iitGFLGsGKTTll~~ll~~~~~-~-----~~~avI~Ne~g 38 (174)
T pfam02492 2 VTVLTGFLGSGKTTLLEHLLRDNRE-G-----LKIAVIVNDFG 38 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC-C-----CCEEEEEECCC
T ss_conf 6999348878899999999984448-9-----84799993365
No 25
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.58 E-value=0.0029 Score=40.40 Aligned_cols=42 Identities=24% Similarity=0.300 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 999999999845899699998787868899999999760788
Q gi|254780824|r 19 TICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 19 t~~la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
+...+..|..++..+.-++..|.-|+|||||.++++..+...
T Consensus 135 ~~~~a~~L~~~V~~r~nilI~G~TgsGKTTll~all~~i~~~ 176 (320)
T PRK13894 135 TAEQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQ 176 (320)
T ss_pred CHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 999999999999728758998588865689999998632026
No 26
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=96.57 E-value=0.0045 Score=39.27 Aligned_cols=97 Identities=22% Similarity=0.229 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-----CCCCCCCCHHHHHHHCCCCCCEEEEEEE---
Q ss_conf 99999999999845899699998787868899999999760788-----8530245202011003788608999865---
Q gi|254780824|r 17 KNTICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD-----DALEVLSPTFTLVQLYDASIPVAHFDFY--- 88 (162)
Q Consensus 17 ~~t~~la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~-----~~~~V~SPTF~l~~~Y~~~~~i~H~DlY--- 88 (162)
+++..+...--+-|+.|-=|-|.|+=|.||||++..+|+.++=. +..+ =-|=-|+=.|.+....--+|=|
T Consensus 5 ~~v~~v~~R~l~yL~~G~PvHl~GPaG~GKT~LA~hvA~~r~RPV~l~~Gd~e--L~~~DLvG~~~g~~~~kv~Dqfihn 82 (265)
T TIGR02640 5 DAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVVLINGDAE--LTTSDLVGSYAGYTRKKVVDQFIHN 82 (265)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCC--CCCCCCCCCCCCCEEEEEEECCEEE
T ss_conf 23799999876632278866744788855689999999736896899865823--2654423154675222232012111
Q ss_pred --CCCCH--HHHHCCCHHHHCCCCEEEE--ECH
Q ss_conf --17897--7753058367508978999--985
Q gi|254780824|r 89 --RLSSH--QEVVELGFDEILNERICII--EWP 115 (162)
Q Consensus 89 --RL~~~--~E~~~lg~~e~~~~~i~lI--EWp 115 (162)
..++. +-|.|-=+-....+|.++| |..
T Consensus 83 V~K~~d~~~~~W~D~rLt~Av~eG~TLVYdEF~ 115 (265)
T TIGR02640 83 VVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFT 115 (265)
T ss_pred EECCCCCCCCCCCCCHHHHHHHCCCEEEECCCC
T ss_conf 342512200266783578997569727664757
No 27
>PRK08233 hypothetical protein; Provisional
Probab=96.56 E-value=0.0047 Score=39.11 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=26.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 899699998787868899999999760788
Q gi|254780824|r 31 RLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 31 ~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
+.+.||...|.=||||||+++.+++.++..
T Consensus 1 kkp~IIgIaGgSgSGKTtla~~l~~~l~~~ 30 (182)
T PRK08233 1 KKTKIITIAAVSGGGKTTLTERLTHKLKNS 30 (182)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 998899996888678999999999974677
No 28
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.53 E-value=0.0027 Score=40.63 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=24.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 999987878688999999997607888
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
+|...|+=|||||||++.+++.|+..+
T Consensus 1 iIgIaG~SgSGKTT~a~~L~~~l~~~~ 27 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNG 27 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 989989897789999999999984648
No 29
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.53 E-value=0.017 Score=35.76 Aligned_cols=136 Identities=15% Similarity=0.132 Sum_probs=78.6
Q ss_pred HHHHHHHHHCCCC---CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC-------C-CCCEEEEEEEC
Q ss_conf 9999999845899---69999878786889999999976078885302452020110037-------8-86089998651
Q gi|254780824|r 21 CLGRHLASILRLG---DCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD-------A-SIPVAHFDFYR 89 (162)
Q Consensus 21 ~la~~la~~l~~g---~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~-------~-~~~i~H~DlYR 89 (162)
.+.+.|.+.+..| ...+|.|.=|+||||-+|-++++|.+.... ..+||..-|+..+ + ...+.-+|+=-
T Consensus 28 ~~~~~l~n~i~~~~~~~aylf~G~rG~GKTt~Ari~ak~lnc~~~~-~~~~~~~~c~~c~~c~~i~~~~~~dv~EiDaas 106 (507)
T PRK06645 28 VLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALI-TENTTIKTCEKCTNCISFNNHNHPDIIEIDAAS 106 (507)
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCC
T ss_conf 9999999999739966347745879978899999999996799988-889988888887678998658999859963788
Q ss_pred CCCHHHHHCCCHHH--HCC----CCEEEEECHHHHH--------CC---CCCCEEEEEEEECCC-------EEEEEEE--
Q ss_conf 78977753058367--508----9789999855632--------04---995409999987398-------7699999--
Q gi|254780824|r 90 LSSHQEVVELGFDE--ILN----ERICIIEWPEIGR--------SL---LPKKYIDIHLSQGKT-------GRKATIS-- 143 (162)
Q Consensus 90 L~~~~E~~~lg~~e--~~~----~~i~lIEWpe~~~--------~~---lp~~~i~I~i~~~~~-------~R~i~i~-- 143 (162)
-.+.+++.++ ++. |-. -.|.+|.=...+. .. -|+....|-.+.... +|--.+.
T Consensus 107 ~~gv~~ir~l-~~~~~~~p~~~~~kv~iidE~hmls~~a~nallktlEepp~~~~Fi~atte~~kip~ti~srcq~f~~~ 185 (507)
T PRK06645 107 KTSVDDIRRI-IESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLR 185 (507)
T ss_pred CCCHHHHHHH-HHHCCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCHHHHHHCEEEEEE
T ss_conf 8888999999-863551787674358995214224899999999974278644389997485364837888543278754
Q ss_pred --ECCHHHHHHHHHHHH
Q ss_conf --586089999999998
Q gi|254780824|r 144 --AERWIISHINQMNRS 158 (162)
Q Consensus 144 --~~~~~~~~l~~~~~~ 158 (162)
....+.++++.+.++
T Consensus 186 ~i~~~~i~~~l~~i~~~ 202 (507)
T PRK06645 186 RLSFEEIFKLLEYITKQ 202 (507)
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 59979999999999997
No 30
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.52 E-value=0.0037 Score=39.74 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=34.1
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 99999998458996999987878688999999997607888
Q gi|254780824|r 21 CLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 21 ~la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
.+...|..+...+.-|+..|.-|||||||.++++..+...+
T Consensus 150 ~~~~fL~~aV~~r~NIlIsGgTGSGKTTllnALl~~IP~~e 190 (343)
T PRK13851 150 DLEAFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQE 190 (343)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCC
T ss_conf 79999999997698899988898619999999996289655
No 31
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.51 E-value=0.0075 Score=37.90 Aligned_cols=136 Identities=14% Similarity=0.197 Sum_probs=89.1
Q ss_pred HHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCC-------------------CCCCHHHHHHHCCCCCCEEEE
Q ss_conf 9998458996999987878688999999997607888530-------------------245202011003788608999
Q gi|254780824|r 25 HLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALE-------------------VLSPTFTLVQLYDASIPVAHF 85 (162)
Q Consensus 25 ~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~-------------------V~SPTF~l~~~Y~~~~~i~H~ 85 (162)
-+++.-.++.=++|+|++|.|||-+.-.|-.++.+..... -+-|-..+..++-++..+.-|
T Consensus 57 lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~~~vLCf 136 (367)
T COG1485 57 LFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAAETRVLCF 136 (367)
T ss_pred CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEE
T ss_conf 00368888835888899786499999999865876456655077999999999999718888657999999841788986
Q ss_pred EEECCCCHHHHHCCC--HHHHCCCCEEEEECHHHHH-----------CCCCC-----CEEE-EEEEECCCEEEEEEEE--
Q ss_conf 865178977753058--3675089789999855632-----------04995-----4099-9998739876999995--
Q gi|254780824|r 86 DFYRLSSHQEVVELG--FDEILNERICIIEWPEIGR-----------SLLPK-----KYID-IHLSQGKTGRKATISA-- 144 (162)
Q Consensus 86 DlYRL~~~~E~~~lg--~~e~~~~~i~lIEWpe~~~-----------~~lp~-----~~i~-I~i~~~~~~R~i~i~~-- 144 (162)
|=+-+.|..+.--|+ |++.+.+||++|==....+ .++|. .+.. ++++-..++|......
T Consensus 137 DEF~VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY~dGlqR~~FLP~I~li~~~~~v~~vD~~~DYR~r~l~~a~ 216 (367)
T COG1485 137 DEFEVTDIADAMILGRLLEALFARGVVLVATSNTAPDNLYKDGLQRERFLPAIDLIKSHFEVVNVDGPVDYRLRKLEQAP 216 (367)
T ss_pred EEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCC
T ss_conf 30362375788999999999997796899958999678544602577637799999875479970587662356666674
Q ss_pred ------CCHHHHHHHHHHHHHH
Q ss_conf ------8608999999999861
Q gi|254780824|r 145 ------ERWIISHINQMNRSTS 160 (162)
Q Consensus 145 ------~~~~~~~l~~~~~~~~ 160 (162)
+......+.++...++
T Consensus 217 ~y~~Pl~~~~~~~l~~~~~~ls 238 (367)
T COG1485 217 VYLTPLDAEAEAALDKLWAALS 238 (367)
T ss_pred EEECCCCHHHHHHHHHHHHHHC
T ss_conf 4554786788999999998733
No 32
>PRK04195 replication factor C large subunit; Provisional
Probab=96.50 E-value=0.01 Score=37.03 Aligned_cols=49 Identities=29% Similarity=0.259 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHHHC---CCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 299899999999999845---8996999987878688999999997607888
Q gi|254780824|r 13 IPNEKNTICLGRHLASIL---RLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 13 l~~~~~t~~la~~la~~l---~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
+-++.....+-..+..-. ++...++|.|+=|.||||.++.+++.+|.+-
T Consensus 17 vg~~~~v~~l~~Wl~~w~~g~~~~k~lLL~GPpGvGKTT~a~~lAk~~g~~v 68 (403)
T PRK04195 17 VGNEKAKKQLREWIESWLKGKPPKKALLLYGPPGVGKTSLAHALANDYGWEV 68 (403)
T ss_pred HCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 5889999999999999873996574699889399879999999999849985
No 33
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.50 E-value=0.0031 Score=40.19 Aligned_cols=30 Identities=27% Similarity=0.427 Sum_probs=26.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 996999987878688999999997607888
Q gi|254780824|r 32 LGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 32 ~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
...+|.+.|.+||||||+++.+++.+|...
T Consensus 3 ~~~~IvI~G~IG~GKSTLa~~La~~l~~~~ 32 (216)
T COG1428 3 VAMVIVIEGMIGAGKSTLAQALAEHLGFKV 32 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 660899844644687899999998838850
No 34
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.49 E-value=0.0034 Score=39.95 Aligned_cols=41 Identities=27% Similarity=0.336 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 99999999984589969999878786889999999976078
Q gi|254780824|r 19 TICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 19 t~~la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
+...+..|...+..+.-|+..|.-|||||||.++++..+..
T Consensus 130 t~~~~~~L~~aV~~r~nilVsGgTGSGKTTllnaL~~~i~~ 170 (323)
T PRK13833 130 TEAQASTIRSAISSRLNIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred CHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 99999999999981896899917777568999999986402
No 35
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=96.49 E-value=0.0022 Score=41.14 Aligned_cols=126 Identities=15% Similarity=0.241 Sum_probs=65.8
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCC---C-CCEEEEEEECCCC-HHHH
Q ss_conf 999999845899699998787868899999999760788853024520201100378---8-6089998651789-7775
Q gi|254780824|r 22 LGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDA---S-IPVAHFDFYRLSS-HQEV 96 (162)
Q Consensus 22 la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~---~-~~i~H~DlYRL~~-~~E~ 96 (162)
+..-|-.++..+.-|.+.|-=|+|||||.|++++....++- +- ||--.++- . ++-.|+ .=-++ .+..
T Consensus 147 ~~~Fl~~Ai~~~knIii~GGTgSGKTTf~kal~~~IP~~ER--~i----TIED~~E~~~~hhpN~V~L--~ysk~v~~g~ 218 (328)
T TIGR02788 147 IKEFLRLAIASRKNIIISGGTGSGKTTFLKALVKEIPKDER--LI----TIEDTRELFLPHHPNKVHL--FYSKGVGQGS 218 (328)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCC--EE----EEEEEECCCCCCCCCEEEE--EECCCCCCCC
T ss_conf 87999999873891999906897189999999732762252--78----8852011478889864565--5346423443
Q ss_pred HCCCHHHHCCCCEEEEECHHHHH--CCCCCCEE-EEEE-EECCCEEEEEEEECC--HHHHHHHHHHH
Q ss_conf 30583675089789999855632--04995409-9999-873987699999586--08999999999
Q gi|254780824|r 97 VELGFDEILNERICIIEWPEIGR--SLLPKKYI-DIHL-SQGKTGRKATISAER--WIISHINQMNR 157 (162)
Q Consensus 97 ~~lg~~e~~~~~i~lIEWpe~~~--~~lp~~~i-~I~i-~~~~~~R~i~i~~~~--~~~~~l~~~~~ 157 (162)
....-.+.+.-+.-+ =|||+- ++-..+.+ .|+. ..+..+=.=+++|+. .+.++|..|.+
T Consensus 219 ~~vt~~~Ll~scLRM--rPDRI~LgELRG~Eaf~F~~~~nsGHpGsiTT~HA~s~~~Af~qla~l~k 283 (328)
T TIGR02788 219 AKVTPKDLLESCLRM--RPDRILLGELRGDEAFDFIRAVNSGHPGSITTVHAGSPEEAFEQLALLVK 283 (328)
T ss_pred CCCCHHHHHHHHHCC--CCCHHHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 568989999997117--74057674303325788887520598860567871898999999999872
No 36
>PRK05480 uridine kinase; Provisional
Probab=96.49 E-value=0.0036 Score=39.82 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=27.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 8996999987878688999999997607888
Q gi|254780824|r 31 RLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 31 ~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
+.+-+|...|.=|||||||++.+...|+...
T Consensus 4 k~P~iIgIaG~SgSGKTT~a~~L~~~l~~~~ 34 (209)
T PRK05480 4 KQPIIIGIAGGSGSGKTTVASTIYEELGDES 34 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf 8988999989997789999999999808687
No 37
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.49 E-value=0.0073 Score=37.98 Aligned_cols=44 Identities=27% Similarity=0.215 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHHHHCC----CCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 98999999999998458----996999987878688999999997607
Q gi|254780824|r 15 NEKNTICLGRHLASILR----LGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 15 ~~~~t~~la~~la~~l~----~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
.++...+|...+..... ...|++|.|+.|+||+||++.+.++|-
T Consensus 56 ~e~~i~~~V~~~k~AA~g~~~~k~IllL~GPvGsGKStl~~~Lk~~lE 103 (361)
T smart00763 56 MEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 489999999999999844671256999988998877999999999999
No 38
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.45 E-value=0.0074 Score=37.93 Aligned_cols=29 Identities=41% Similarity=0.471 Sum_probs=26.1
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 58996999987878688999999997607
Q gi|254780824|r 30 LRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 30 l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
..++.-++|.|+-|+|||+++|.+++.++
T Consensus 16 ~~~~~~ill~GppGtGKT~la~~ia~~~~ 44 (151)
T cd00009 16 LPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 87998089989999886599999999712
No 39
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.41 E-value=0.0043 Score=39.33 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=26.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 996999987878688999999997607888
Q gi|254780824|r 32 LGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 32 ~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
++.-|+|.|-+||||||..|.+++.|++.-
T Consensus 3 ~~~nI~liG~~GsGKTtvgk~LA~~L~~~f 32 (175)
T PRK00131 3 KGPNIVLIGMMGAGKSTIGRLLAKRLGYEF 32 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 998089888999998999999999959690
No 40
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.39 E-value=0.017 Score=35.81 Aligned_cols=101 Identities=14% Similarity=0.166 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHHHC--------CCCCEEEEECCCCCCHHHHHHHHHHHHCCCC----CCCCCCCHHHHHHHCCCC--
Q ss_conf 99899999999999845--------8996999987878688999999997607888----530245202011003788--
Q gi|254780824|r 14 PNEKNTICLGRHLASIL--------RLGDCLTLSGDLGSGKSFLARSIIRFLMHDD----ALEVLSPTFTLVQLYDAS-- 79 (162)
Q Consensus 14 ~~~~~t~~la~~la~~l--------~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~----~~~V~SPTF~l~~~Y~~~-- 79 (162)
.+++.-..+...|++.+ ..+.+++|.|+-|+||||-+--++..+.... ..=||-=||-+-=.-+-.
T Consensus 183 ~~~~~~~~l~~~L~~~l~~~~~~~~~~~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQLk~Y 262 (412)
T PRK05703 183 NPREAWRYLLELLANMLPTRVEDILEQGGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQLKTY 262 (412)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHH
T ss_conf 97999999999999757888766545673699988888756769999999999972998179998376777799999999
Q ss_pred CCEEEEEEECCCCHHHHHCCCHHHHCCCCEEEEECH
Q ss_conf 608999865178977753058367508978999985
Q gi|254780824|r 80 IPVAHFDFYRLSSHQEVVELGFDEILNERICIIEWP 115 (162)
Q Consensus 80 ~~i~H~DlYRL~~~~E~~~lg~~e~~~~~i~lIEWp 115 (162)
..|..+.++.+.+++|+... ++++-+..+++|-=|
T Consensus 263 a~ilgvp~~v~~~~~~l~~a-l~~~~~~dlILIDTa 297 (412)
T PRK05703 263 AKIMGIPVKVAYDPKELAKA-LEQLANCDLILIDTA 297 (412)
T ss_pred HHHCCCEEEEECCHHHHHHH-HHHHCCCCEEEEECC
T ss_conf 99719737984799999999-987158997999689
No 41
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=96.37 E-value=0.0029 Score=40.41 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=27.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC
Q ss_conf 9999878786889999999976078885302452020110037
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD 77 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~ 77 (162)
|..+.|=||||||||.+.+++.... .-.-.|+|++-
T Consensus 2 v~iitGFLGaGKTTll~~lL~~~~~-------~~~avIvNEfG 37 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQHG-------RKIAVIENEFG 37 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHHCCCC-------CCEEEEEECCC
T ss_conf 0899848889999999999847889-------97799970765
No 42
>KOG0743 consensus
Probab=96.37 E-value=0.011 Score=36.99 Aligned_cols=60 Identities=22% Similarity=0.308 Sum_probs=39.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCCCCEEEEECH
Q ss_conf 99987878688999999997607888530245202011003788608999865178977753058367508978999985
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDASIPVAHFDFYRLSSHQEVVELGFDEILNERICIIEWP 115 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~~~i~lIEWp 115 (162)
-+|.|+=|+|||+|+.++|+.|+.+ ||-++|=-+.+..|+..| +-..-+.+|++||=-
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L~yd---------------------IydLeLt~v~~n~dLr~L-L~~t~~kSIivIEDI 295 (457)
T KOG0743 238 YLLYGPPGTGKSSFIAAMANYLNYD---------------------IYDLELTEVKLDSDLRHL-LLATPNKSILLIEDI 295 (457)
T ss_pred CEEECCCCCCHHHHHHHHHHHCCCC---------------------EEEEEECCCCCCHHHHHH-HHHCCCCCEEEEEEC
T ss_conf 1204799998889999997205873---------------------677440023683899999-972899718999612
Q ss_pred HH
Q ss_conf 56
Q gi|254780824|r 116 EI 117 (162)
Q Consensus 116 e~ 117 (162)
|-
T Consensus 296 Dc 297 (457)
T KOG0743 296 DC 297 (457)
T ss_pred CC
T ss_conf 43
No 43
>PRK13948 shikimate kinase; Provisional
Probab=96.35 E-value=0.0049 Score=39.00 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=27.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 8996999987878688999999997607888
Q gi|254780824|r 31 RLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 31 ~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
+|...|.|.|-+||||||.-|.+++.|+++-
T Consensus 8 ~~~~~IvLIG~mGsGKStiGk~LA~~l~~~f 38 (182)
T PRK13948 8 RPATFVALAGFMGTGKSRIGWELSRALALHF 38 (182)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 9998189889999988999999999969598
No 44
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.31 E-value=0.0043 Score=39.36 Aligned_cols=33 Identities=36% Similarity=0.481 Sum_probs=28.0
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 845899699998787868899999999760788
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
=.+.+|.+++|.|+=|||||||.|.++.-+-..
T Consensus 23 f~i~~Gei~~l~G~NGaGKTTLlk~i~Gl~~p~ 55 (206)
T PRK13539 23 FTLAAGEALVLTGPNGSGKTTLLRLLAGLLPPA 55 (206)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 898699499998999998999999995887888
No 45
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=96.28 E-value=0.0042 Score=39.44 Aligned_cols=27 Identities=22% Similarity=0.525 Sum_probs=24.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 999987878688999999997607888
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
+|...|.=|||||||++.+++.|+..+
T Consensus 1 iIgIaG~SgSGKTT~a~~L~~~l~~~~ 27 (196)
T pfam00485 1 IIGVAGSSGAGKTTVARTFVSIFGREG 27 (196)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 989989985719999999999966058
No 46
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.28 E-value=0.028 Score=34.44 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHCCC--CCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 89999999999984589--969999878786889999999976078
Q gi|254780824|r 16 EKNTICLGRHLASILRL--GDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 16 ~~~t~~la~~la~~l~~--g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
++|...++..|...+.. +.-+++.|.-|+|||+-+|.+++.+.-
T Consensus 36 e~Ei~~l~~~l~~~l~g~~~~n~~I~G~pGTGKT~~vk~v~~~l~~ 81 (394)
T PRK00411 36 EEQIEELAFALRPALRGSRPSNVLILGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999999999999975999984799889999899999999999997
No 47
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=96.27 E-value=0.022 Score=35.14 Aligned_cols=49 Identities=18% Similarity=0.157 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHHHCCC--CCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 29989999999999984589--96999987878688999999997607888
Q gi|254780824|r 13 IPNEKNTICLGRHLASILRL--GDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 13 l~~~~~t~~la~~la~~l~~--g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
...++....+..-+.....+ .-+|.+.|.-|||||||++.+++.|+-..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~rR~lIgIaG~pGSGKSTlA~~l~~~L~~~~ 62 (230)
T PRK09270 12 QYLDELIEEVHKPLMLAAEPQRRTVVGIAGPPGAGKSTLAETLWEALSQQG 62 (230)
T ss_pred EECHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 514566899999998715999718999989998899999999999986237
No 48
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.27 E-value=0.0052 Score=38.87 Aligned_cols=34 Identities=32% Similarity=0.422 Sum_probs=29.0
Q ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9845899699998787868899999999760788
Q gi|254780824|r 27 ASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 27 a~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.=.+++|.+++|.|+=|||||||.|-++.-+-.+
T Consensus 21 s~~i~~G~i~~l~G~NGaGKSTLlkli~Gl~~p~ 54 (200)
T PRK13540 21 SFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE 54 (200)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 7898799799998899987999999997785889
No 49
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.26 E-value=0.0045 Score=39.27 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=25.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 6999987878688999999997607888
Q gi|254780824|r 34 DCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 34 ~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
.-|.|.|-|||||||.-|.+++.|+..-
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf 6189971799977689999999819980
No 50
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.24 E-value=0.0066 Score=38.22 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=32.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 89969999878786889999999976078885302452
Q gi|254780824|r 31 RLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSP 68 (162)
Q Consensus 31 ~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SP 68 (162)
+|+.+|...|+=|.||||++|++++.+......+|+-|
T Consensus 37 pPP~vVavvGPpgvGKtTLiksLvk~ytk~~l~~i~GP 74 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP 74 (225)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99969999898997788999999999854437557888
No 51
>KOG0744 consensus
Probab=96.22 E-value=0.0031 Score=40.23 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=26.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 899699998787868899999999760788
Q gi|254780824|r 31 RLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 31 ~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.-..+|+|+|+=|+|||++||++++-|.+.
T Consensus 175 t~NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744 175 TWNRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred EEEEEEEEECCCCCCHHHHHHHHHHHHEEE
T ss_conf 641489985799988227999998751465
No 52
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.22 E-value=0.0052 Score=38.84 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=27.6
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 845899699998787868899999999760788
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
=.+.+|.++++.|+=|||||||.|.++.-+...
T Consensus 22 ~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~ 54 (204)
T PRK13538 22 FTLNAGELVQIEGPNGAGKTSLLRILAGLARPD 54 (204)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 798799899999999985999999997688888
No 53
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.21 E-value=0.0097 Score=37.24 Aligned_cols=43 Identities=30% Similarity=0.362 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHHHCCCCCE--EEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 989999999999984589969--99987878688999999997607888
Q gi|254780824|r 15 NEKNTICLGRHLASILRLGDC--LTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 15 ~~~~t~~la~~la~~l~~g~i--i~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
++.....|-. .+..|.+ ++|.|+=|+||||.++.+++.++.+.
T Consensus 20 q~~i~~~L~~----~~~~~~~phlLf~GPpG~GKTt~A~~lA~~l~~~~ 64 (337)
T PRK12402 20 QESVVDHLSA----LAASGNLPHLVVYGPSGSGKTAAVRALARELYGDP 64 (337)
T ss_pred CHHHHHHHHH----HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 7999999999----99779987698889298489999999999967997
No 54
>PRK13542 consensus
Probab=96.20 E-value=0.0057 Score=38.63 Aligned_cols=32 Identities=34% Similarity=0.430 Sum_probs=28.2
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+.+|.+++|.|+=|||||||.|.+..-+..+
T Consensus 40 ~i~~Gei~~liGpNGaGKTTLlk~l~Gll~p~ 71 (224)
T PRK13542 40 SLAPGDLLQVMGPNGSGKTSLLRVLSGLMPPA 71 (224)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 87599799999999999999999995797888
No 55
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.20 E-value=0.0041 Score=39.47 Aligned_cols=38 Identities=24% Similarity=0.230 Sum_probs=28.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC
Q ss_conf 969999878786889999999976078885302452020110037
Q gi|254780824|r 33 GDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD 77 (162)
Q Consensus 33 g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~ 77 (162)
=-|..+.|=||||||||.+.+++.-.... .-.|+|++-
T Consensus 4 IPVtiltGFLGaGKTTlL~~lL~~~~~~r-------iaVivNEfG 41 (317)
T PRK11537 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYK-------IAVIENEFG 41 (317)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHCCCCCC-------EEEEEECCC
T ss_conf 68899830888899999999972778997-------899983761
No 56
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.16 E-value=0.0057 Score=38.63 Aligned_cols=32 Identities=31% Similarity=0.528 Sum_probs=27.7
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+.+|.+++|.|+=||||||+.|.++.-+..+
T Consensus 33 ~v~~Ge~~~l~GpNGaGKTTLlr~l~Gl~~p~ 64 (214)
T PRK13543 33 HVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE 64 (214)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 98189899999999987999999997697788
No 57
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.15 E-value=0.0059 Score=38.52 Aligned_cols=31 Identities=32% Similarity=0.459 Sum_probs=27.0
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 4589969999878786889999999976078
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
.+.+|.++.|.|+=|||||||.|.++.-+-.
T Consensus 22 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p 52 (201)
T cd03231 22 TLAAGEALQVTGPNGSGKTTLLRILAGLSPP 52 (201)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 8879959999999999999999999667788
No 58
>PRK13946 shikimate kinase; Provisional
Probab=96.15 E-value=0.011 Score=37.00 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=31.6
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 99999998458996999987878688999999997607888
Q gi|254780824|r 21 CLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 21 ~la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
.-+..+...+.. .-|+|.|-+||||||.-|.+++.|+..-
T Consensus 9 ~~~~~~~~~l~k-knIvLIG~mGsGKStvGk~LA~~L~~~f 48 (195)
T PRK13946 9 SQEEQIRAALGK-RTVVLVGLMGAGKSTVGRRLATMLGLPF 48 (195)
T ss_pred CHHHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 559999998589-9589989999988999999999979798
No 59
>PTZ00301 uridine kinase; Provisional
Probab=96.14 E-value=0.0061 Score=38.44 Aligned_cols=28 Identities=39% Similarity=0.488 Sum_probs=24.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 9969999878786889999999976078
Q gi|254780824|r 32 LGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 32 ~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
|..||...|+=|||||||++.+++.|..
T Consensus 2 ~~~iIgIaGgSgSGKTT~a~~i~~~l~~ 29 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMA 29 (210)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9889999688767899999999999876
No 60
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.13 E-value=0.019 Score=35.50 Aligned_cols=48 Identities=25% Similarity=0.205 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHHHCCCC------CEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 99899999999999845899------6999987878688999999997607888
Q gi|254780824|r 14 PNEKNTICLGRHLASILRLG------DCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 14 ~~~~~t~~la~~la~~l~~g------~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
.++.+....-..+...+.++ .-|+|.|=+||||||.-|.+++.||+.-
T Consensus 108 ~~~~~~~~~~~~l~~~~~~~~~~~~~~rIaLIGlmGaGKSTvGr~LA~~Lg~pF 161 (304)
T PRK08154 108 ATPAQLARARDALSGMLGTGGGAARRPRIALIGLRGAGKSTLGRMLAARLGVPF 161 (304)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 899999999999876302376667778479889999988899999999959897
No 61
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.12 E-value=0.0049 Score=39.00 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=23.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 999987878688999999997607888
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
+|...|.=|||||||++.+.+.|+...
T Consensus 1 iIgI~G~sgsGKTT~a~~L~~~l~~~~ 27 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPK 27 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 989889998859999999999809998
No 62
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.012 Score=36.60 Aligned_cols=30 Identities=37% Similarity=0.438 Sum_probs=27.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 899699998787868899999999760788
Q gi|254780824|r 31 RLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 31 ~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
..|-|+||.|+=|.|||.+.|+|++++|-.
T Consensus 348 ~kGpILcLVGPPGVGKTSLgkSIA~al~Rk 377 (782)
T COG0466 348 LKGPILCLVGPPGVGKTSLGKSIAKALGRK 377 (782)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHCCC
T ss_conf 788579997899887011899999995897
No 63
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=96.08 E-value=0.0064 Score=38.30 Aligned_cols=29 Identities=34% Similarity=0.528 Sum_probs=26.0
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 45899699998787868899999999760
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFL 57 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~l 57 (162)
.+.+|.++.|-|+=||||||+.|.+..-+
T Consensus 26 ~i~~GE~~~iiGpNGaGKSTLlk~i~Gll 54 (262)
T PRK09984 26 NIHHGEMVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 98799899999899960999999997567
No 64
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.03 E-value=0.036 Score=33.76 Aligned_cols=79 Identities=18% Similarity=0.131 Sum_probs=52.2
Q ss_pred HHHHHHHHHCCCC---CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC-------CC-CCEEEEEEEC
Q ss_conf 9999999845899---69999878786889999999976078885302452020110037-------88-6089998651
Q gi|254780824|r 21 CLGRHLASILRLG---DCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD-------AS-IPVAHFDFYR 89 (162)
Q Consensus 21 ~la~~la~~l~~g---~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~-------~~-~~i~H~DlYR 89 (162)
.+.+.|.+.|..+ .-.+|.|.=|.||||.+|-|+++|.+.....=+.||..-|+.-. |+ ..++-+|.=-
T Consensus 23 ~v~~~l~na~~~~r~~haylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C~~C~~i~~g~~~d~~EiDaas 102 (721)
T PRK12323 23 HVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAAS 102 (721)
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCC
T ss_conf 99999999997199754475027998889899999999976899866789878878776546877568987647743676
Q ss_pred CCCHHHHHCC
Q ss_conf 7897775305
Q gi|254780824|r 90 LSSHQEVVEL 99 (162)
Q Consensus 90 L~~~~E~~~l 99 (162)
-.+.+++.+|
T Consensus 103 ~~~v~~~r~l 112 (721)
T PRK12323 103 NRGVDEMAQL 112 (721)
T ss_pred CCCHHHHHHH
T ss_conf 7888999999
No 65
>TIGR02475 CobW cobalamin biosynthesis protein CobW; InterPro: IPR012824 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobW proteins, which are generally found proximal to the trimeric cobaltochelatase subunit CobN, an essential protein for vitamin B12 (cobalamin) biosynthesis . They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids.; GO: 0009236 cobalamin biosynthetic process.
Probab=96.03 E-value=0.004 Score=39.55 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=27.7
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC
Q ss_conf 99878786889999999976078885302452020110037
Q gi|254780824|r 37 TLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD 77 (162)
Q Consensus 37 ~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~ 77 (162)
--.|=|||||||++|-++.+-..+-.. .||||.-
T Consensus 8 vvTGFLGaGKTTLiRhlL~NA~GkRiA-------vIVNEFG 41 (349)
T TIGR02475 8 VVTGFLGAGKTTLIRHLLENAEGKRIA-------VIVNEFG 41 (349)
T ss_pred EEECCCCCCHHHHHHHHHHCCCCCEEE-------EEEECCC
T ss_conf 873756761589999997174787699-------9985255
No 66
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.01 E-value=0.038 Score=33.61 Aligned_cols=90 Identities=18% Similarity=0.224 Sum_probs=55.3
Q ss_pred HHHHHHHHHCCCC---CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHC-------CCC-CCEEEEEEEC
Q ss_conf 9999999845899---6999987878688999999997607888530245202011003-------788-6089998651
Q gi|254780824|r 21 CLGRHLASILRLG---DCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLY-------DAS-IPVAHFDFYR 89 (162)
Q Consensus 21 ~la~~la~~l~~g---~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y-------~~~-~~i~H~DlYR 89 (162)
.+.+.|.+.|..| ...+|.|.=|.||||.+|-|+++|++.. .||-+=|+.- +|+ ..++-+|.=-
T Consensus 23 ~v~~~l~nal~~~rl~haylf~G~rGvGKTt~aRi~Ak~lnC~~-----~~~~~pcg~C~~C~~i~~g~~~d~iEiDaAS 97 (816)
T PRK07003 23 HVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCET-----GVTSQPCGVCRACREIDEGRFVDYVEMDAAS 97 (816)
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHHCCCCCCEEEEECCC
T ss_conf 99999999997098631475117898888899999999867899-----9998978775557877558877547863554
Q ss_pred CCCHHHHHCCCHHH--HCC----CCEEEEECHH
Q ss_conf 78977753058367--508----9789999855
Q gi|254780824|r 90 LSSHQEVVELGFDE--ILN----ERICIIEWPE 116 (162)
Q Consensus 90 L~~~~E~~~lg~~e--~~~----~~i~lIEWpe 116 (162)
-.+.+++.+| ++. |.- -.|.+|-=-.
T Consensus 98 ~~~vd~~r~l-~~~~~y~p~~~r~KvyiiDEvH 129 (816)
T PRK07003 98 NRGVDEMAAL-LERAVYAPVDARFKVYMIDEVH 129 (816)
T ss_pred CCCHHHHHHH-HHHCCCCCCCCCEEEEEEECHH
T ss_conf 3576899999-9862247866744799984154
No 67
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=96.00 E-value=0.0068 Score=38.17 Aligned_cols=34 Identities=29% Similarity=0.408 Sum_probs=27.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 99987878688999999997607888530245202
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTF 70 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF 70 (162)
++|.|+=|+|||+++|++++.++..- ..|+.+.+
T Consensus 1 iLl~GppGtGKT~~a~~la~~~~~~~-~~v~~~~~ 34 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAPF-IEISGSEL 34 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHHCCCC-EECCCCCC
T ss_conf 98789999999999999999978985-33242012
No 68
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.00 E-value=0.0079 Score=37.75 Aligned_cols=74 Identities=27% Similarity=0.452 Sum_probs=42.7
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCHHHHHCCCHHHHC-C-
Q ss_conf 45899699998787868899999999760788853024520201100378860899986517897775305836750-8-
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDASIPVAHFDFYRLSSHQEVVELGFDEIL-N- 106 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~-~- 106 (162)
.+++|.++.|-|+=|||||||.|.+...+... |-+.. ......+.|++ .|+ ..+-.-+.+-..+ .
T Consensus 22 ~i~~ge~~~l~G~NGsGKTTl~~~l~G~~~~~------~G~i~----~~~~~~i~y~~--QLS-gGqkqr~~la~al~~~ 88 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGELEPD------EGIVT----WGSTVKIGYFE--QLS-GGEKMRLALAKLLLEN 88 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCC------CEEEE----ECCCCEEEEEH--HCC-HHHHHHHHHHHHHCCC
T ss_conf 98799999999899984999999984898898------50999----99960899870--079-9999999999997259
Q ss_pred CCEEEEECH
Q ss_conf 978999985
Q gi|254780824|r 107 ERICIIEWP 115 (162)
Q Consensus 107 ~~i~lIEWp 115 (162)
..+.+.-=|
T Consensus 89 p~iliLDEP 97 (144)
T cd03221 89 PNLLLLDEP 97 (144)
T ss_pred CCEEEEECC
T ss_conf 989999577
No 69
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=95.98 E-value=0.0076 Score=37.86 Aligned_cols=28 Identities=32% Similarity=0.432 Sum_probs=25.4
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 4589969999878786889999999976
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRF 56 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~ 56 (162)
.+++|.++++-|+=|||||||.|.++.-
T Consensus 23 ~i~~Gei~~iiG~nGaGKSTLl~~i~G~ 50 (248)
T PRK09580 23 EVRPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 9849979999999999999999998377
No 70
>PRK07429 phosphoribulokinase; Provisional
Probab=95.98 E-value=0.01 Score=37.03 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=28.4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 589969999878786889999999976078885
Q gi|254780824|r 30 LRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDA 62 (162)
Q Consensus 30 l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~ 62 (162)
...+-+|...|+=|||||||+|.+++.||.+..
T Consensus 5 ~~rP~IIGIAGgSGSGKTTv~r~I~~~fg~~~V 37 (331)
T PRK07429 5 PDRPVIIGVAGDSGCGKSTFLRRLADLFGEELV 37 (331)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCE
T ss_conf 999989998578877899999999998388877
No 71
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.97 E-value=0.0079 Score=37.75 Aligned_cols=32 Identities=28% Similarity=0.499 Sum_probs=27.7
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+.+|.++.+-|+=||||||+.|.++.-+...
T Consensus 22 ~i~~Gei~~iiG~nGaGKSTLl~~i~Gl~~p~ 53 (205)
T cd03226 22 DLYAGEIIALTGKNGAGKTTLAKILAGLIKES 53 (205)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 88699899998899998999999995685777
No 72
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.97 E-value=0.0076 Score=37.85 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=28.7
Q ss_pred HHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 99984589969999878786889999999976078
Q gi|254780824|r 25 HLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 25 ~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
.+.=.+++|..+++.|+-||||||+++.+..-+..
T Consensus 19 ~isl~i~~Ge~v~ivG~sGsGKSTLl~ll~gl~~p 53 (236)
T cd03253 19 DVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV 53 (236)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCC
T ss_conf 56899869999999999999899999997438548
No 73
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.96 E-value=0.0078 Score=37.81 Aligned_cols=30 Identities=33% Similarity=0.365 Sum_probs=25.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 899699998787868899999999760788
Q gi|254780824|r 31 RLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 31 ~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
++|.++.|-|+=|||||||.|.++.-+-.+
T Consensus 24 k~GEi~gLiGpNGaGKSTLlk~i~Gll~P~ 53 (255)
T cd03236 24 REGQVLGLVGPNGIGKSTALKILAGKLKPN 53 (255)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 898099998999970999999996798688
No 74
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.96 E-value=0.0077 Score=37.84 Aligned_cols=137 Identities=13% Similarity=0.182 Sum_probs=73.0
Q ss_pred HHHHHHHHCCCC---CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC-CCCHHHHHHHCC-C-CCCEEEEEEECCCCHHH
Q ss_conf 999999845899---69999878786889999999976078885302-452020110037-8-86089998651789777
Q gi|254780824|r 22 LGRHLASILRLG---DCLTLSGDLGSGKSFLARSIIRFLMHDDALEV-LSPTFTLVQLYD-A-SIPVAHFDFYRLSSHQE 95 (162)
Q Consensus 22 la~~la~~l~~g---~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V-~SPTF~l~~~Y~-~-~~~i~H~DlYRL~~~~E 95 (162)
+.+.|.+.+..| ...+|.|+=|+||||++|.|+++|.+....+. +-.+-.-|.... + .+.++++|.=--.+.++
T Consensus 24 iv~~L~nAI~~~RiaHAYLFsGPrGvGKTTlArifAkaLnC~~~~~~dpCg~C~sC~~I~~g~h~DviEIdaasn~gIDe 103 (613)
T PRK05896 24 IKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAASNNGVDE 103 (613)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHH
T ss_conf 99999999984997622775589984889999999999669999999988888789998569999868840655578899
Q ss_pred HHCCCHHHH-CC-----CCEEEEECHHHHHC--------C---CCCCEEEEEEEECCC-------EEEEEEE----ECCH
Q ss_conf 530583675-08-----97899998556320--------4---995409999987398-------7699999----5860
Q gi|254780824|r 96 VVELGFDEI-LN-----ERICIIEWPEIGRS--------L---LPKKYIDIHLSQGKT-------GRKATIS----AERW 147 (162)
Q Consensus 96 ~~~lg~~e~-~~-----~~i~lIEWpe~~~~--------~---lp~~~i~I~i~~~~~-------~R~i~i~----~~~~ 147 (162)
+.++ .+.. +. -.|++|.=++++.. . -|+..+.|-++...+ +|--++. ....
T Consensus 104 IReL-ie~~~~~P~~gkyKV~IIDEah~Ln~~AaNALLKtLEEPP~~viFIL~Ttep~KLLpTIlSRCQrf~Fkri~~~~ 182 (613)
T PRK05896 104 IRNI-IDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSE 182 (613)
T ss_pred HHHH-HHHHCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHCCCCCCCCEEEEEECCHHHCCHHHHHCCCCEECCCCCHHH
T ss_conf 9999-997085875799459998162217999999999853489878379998288154937664035500178899899
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899999999986
Q gi|254780824|r 148 IISHINQMNRST 159 (162)
Q Consensus 148 ~~~~l~~~~~~~ 159 (162)
+.+++..+.++.
T Consensus 183 I~~~L~~I~~kE 194 (613)
T PRK05896 183 LQELLKSIAKKE 194 (613)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999973
No 75
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.95 E-value=0.0092 Score=37.36 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=27.9
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 845899699998787868899999999760788
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
=.+.+|.++++.|+=|||||||.|.++.-+...
T Consensus 28 ~~i~~Ge~~~i~G~sGsGKSTLlk~i~gl~~p~ 60 (225)
T PRK10247 28 FSLRAGEFKLITGPSGCGKSTLLKIVASLISPT 60 (225)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 998599699999999999999999996466888
No 76
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.94 E-value=0.0071 Score=38.05 Aligned_cols=41 Identities=27% Similarity=0.360 Sum_probs=30.2
Q ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 984589969999878786889999999976078885302452
Q gi|254780824|r 27 ASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSP 68 (162)
Q Consensus 27 a~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SP 68 (162)
.=.+++|..+++.|+=||||||+.|.++.-+.... ..|.-|
T Consensus 21 sl~i~~Ge~v~i~G~sGsGKSTLl~~l~Gl~~~~~-G~i~~~ 61 (166)
T cd03223 21 SFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGS-GRIGMP 61 (166)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCC-CEEEEC
T ss_conf 88988999999995899988999999869876998-679976
No 77
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.94 E-value=0.0084 Score=37.59 Aligned_cols=32 Identities=25% Similarity=0.441 Sum_probs=27.8
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+++|.++.+-|+=|||||||.|.++.-+...
T Consensus 21 ~i~~Ge~~~liG~nGsGKTTLl~~i~G~~~~~ 52 (180)
T cd03214 21 SIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS 52 (180)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 88699799999899988999999995798998
No 78
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.93 E-value=0.0086 Score=37.53 Aligned_cols=27 Identities=26% Similarity=0.219 Sum_probs=24.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 999987878688999999997607888
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
-|+|.|-+||||||.-|.+++.||..-
T Consensus 4 ~I~LiG~mGsGKstiGk~LA~~L~~~f 30 (172)
T PRK03731 4 PLFLVGPRGCGKTTVGMALAQALGYRF 30 (172)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 889988999988999999999859997
No 79
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.93 E-value=0.0087 Score=37.52 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=25.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 6999987878688999999997607888
Q gi|254780824|r 34 DCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 34 ~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
.-|+|.|-+||||||..|.+++.|++.-
T Consensus 5 knI~LiG~mGsGKstvgk~LA~~l~~~f 32 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEF 32 (172)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 8289889999988999999999969996
No 80
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.93 E-value=0.0098 Score=37.20 Aligned_cols=32 Identities=34% Similarity=0.400 Sum_probs=28.4
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+++|.++++.|+-||||||+.+.++.-+-..
T Consensus 24 ~i~~Ge~~aivG~sGsGKSTLl~~l~G~~~p~ 55 (178)
T cd03247 24 ELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ 55 (178)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHHCCCCC
T ss_conf 98699999999999875999999998617667
No 81
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.93 E-value=0.0085 Score=37.56 Aligned_cols=33 Identities=33% Similarity=0.427 Sum_probs=27.9
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 845899699998787868899999999760788
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
=.+.+|.++.+-|+=||||||+.|.++..+...
T Consensus 23 l~i~~Gei~~liGpNGaGKSTLlk~i~Gl~~p~ 55 (257)
T PRK13548 23 LTLRPGEVVAILGPNGAGKSTLLRALSGELPPS 55 (257)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 898699899999999987999999985675778
No 82
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.92 E-value=0.0088 Score=37.50 Aligned_cols=34 Identities=38% Similarity=0.555 Sum_probs=28.6
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 8458996999987878688999999997607888
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
=.+.+|.++.|-|+=||||||+.|.++.-+-.+.
T Consensus 25 ~~i~~Gei~~LiGpNGaGKSTLlk~I~Gl~~p~~ 58 (251)
T PRK09544 25 LELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDE 58 (251)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 8987997999998999889999999966888986
No 83
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.92 E-value=0.0086 Score=37.56 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=28.8
Q ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9845899699998787868899999999760788
Q gi|254780824|r 27 ASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 27 a~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.-.+.+|.++++.|+=|||||||.|-++.-+-..
T Consensus 20 sl~i~~G~i~~i~G~NGsGKSTLlk~i~Gl~~p~ 53 (195)
T PRK13541 20 SITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS 53 (195)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 7787799799999999981999999996798898
No 84
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.92 E-value=0.0086 Score=37.56 Aligned_cols=28 Identities=32% Similarity=0.507 Sum_probs=25.0
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 4589969999878786889999999976
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRF 56 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~ 56 (162)
.+.+|.++.|-|+=||||||+.|.+..-
T Consensus 23 ~i~~Ge~~aliG~sGsGKSTLl~~l~gl 50 (248)
T PRK11264 23 EVKPGEVVAIIGPSGSGKTTLLRCINLL 50 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 9879989999999998099999999758
No 85
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=95.91 E-value=0.0079 Score=37.78 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=25.4
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 8458996999987878688999999997
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIR 55 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~ 55 (162)
=.+++|.++++-|+=|||||||.|.++.
T Consensus 27 l~i~~Gei~aiiG~nGsGKSTL~~~i~G 54 (252)
T CHL00131 27 LSINAGEIHAIMGPNGSGKSTLSKVIAG 54 (252)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 7887998999999999999999999727
No 86
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=95.89 E-value=0.0099 Score=37.18 Aligned_cols=33 Identities=33% Similarity=0.412 Sum_probs=28.0
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 845899699998787868899999999760788
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
=.+.+|.++.+-|+=||||||+.|.+..-+-.+
T Consensus 27 ~~v~~GEi~~iiG~nGaGKSTLl~~i~G~~~p~ 59 (258)
T PRK11701 27 FDLYPGEVLGIVGESGSGKTTLLNALSARLAPD 59 (258)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 788799799998889988999999985678888
No 87
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.89 E-value=0.011 Score=37.01 Aligned_cols=30 Identities=37% Similarity=0.507 Sum_probs=26.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 996999987878688999999997607888
Q gi|254780824|r 32 LGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 32 ~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
.+..+++.|+-|+||||+++.++..+....
T Consensus 1 ~~~~ill~G~~GsGKTtl~~~la~~~~~~~ 30 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 997899999997029999999998726689
No 88
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.89 E-value=0.0093 Score=37.35 Aligned_cols=32 Identities=38% Similarity=0.286 Sum_probs=27.3
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+.+|.++.|-|+=||||||+.|.++..+-.+
T Consensus 46 ~i~~GEivgllG~NGaGKSTLlk~I~Gl~~P~ 77 (264)
T PRK13546 46 KAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT 77 (264)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 88599899999899861999999996798888
No 89
>PRK13949 shikimate kinase; Provisional
Probab=95.89 E-value=0.0093 Score=37.33 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=24.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 999987878688999999997607888
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
-|+|.|-+||||||+-|.+++.|+++-
T Consensus 3 ~I~LiG~mGsGKstiGk~La~~l~~~f 29 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSF 29 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 389979999988999999999959997
No 90
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.89 E-value=0.0093 Score=37.35 Aligned_cols=32 Identities=28% Similarity=0.468 Sum_probs=27.7
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+++|.++.|-|+=||||||+.|.+..-+-.+
T Consensus 22 ~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~ 53 (222)
T cd03224 22 TVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR 53 (222)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 98899899999999985999999997798899
No 91
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.87 E-value=0.0099 Score=37.18 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=28.2
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 845899699998787868899999999760788
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
=.+++|.++.|-|+=||||||+.|.++..+..+
T Consensus 26 l~i~~Gei~~liG~NGaGKSTLl~~i~G~~~~~ 58 (237)
T PRK11614 26 LHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT 58 (237)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 898699799998799975999999996799889
No 92
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.87 E-value=0.009 Score=37.44 Aligned_cols=32 Identities=28% Similarity=0.284 Sum_probs=27.4
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+.+|.++.|-|+=|||||||.|.++.-+..+
T Consensus 23 ~i~~Gei~~liGpNGaGKSTLlk~l~Gl~~p~ 54 (271)
T PRK13638 23 DFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ 54 (271)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 98389799999999980999999996688888
No 93
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein; InterPro: IPR012693 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.; GO: 0005524 ATP binding, 0015416 phosphonate transmembrane-transporting ATPase activity, 0015716 phosphonate transport, 0016020 membrane.
Probab=95.86 E-value=0.007 Score=38.07 Aligned_cols=30 Identities=33% Similarity=0.507 Sum_probs=26.0
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 458996999987878688999999997607
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
.+++|.++.+-|+=|||||||.|++=+=-.
T Consensus 24 ~i~~GE~~~~IG~SGAGKSTLLR~iNrL~~ 53 (253)
T TIGR02315 24 EINPGEFVAVIGPSGAGKSTLLRCINRLVE 53 (253)
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 341651799973788726799987753026
No 94
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.86 E-value=0.01 Score=37.13 Aligned_cols=33 Identities=39% Similarity=0.523 Sum_probs=28.3
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 845899699998787868899999999760788
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
-.+++|.++++.|+-||||||+++.++.-+-..
T Consensus 23 l~i~~G~~vaIvG~sGsGKSTLl~ll~gl~~p~ 55 (173)
T cd03246 23 FSIEPGESLAIIGPSGSGKSTLARLILGLLRPT 55 (173)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 998599999999999980999999996666679
No 95
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=95.86 E-value=0.0096 Score=37.25 Aligned_cols=27 Identities=30% Similarity=0.287 Sum_probs=19.0
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 458996999987878688999999997
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIR 55 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~ 55 (162)
.+.+|..+.|.|+=|||||||.|.++.
T Consensus 29 ~i~~Ge~vgLvG~NGaGKSTLlriLaG 55 (556)
T PRK11819 29 SFFPGAKIGVLGLNGAGKSTLLRIMAG 55 (556)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 996898999999999719999999847
No 96
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=95.86 E-value=0.0092 Score=37.36 Aligned_cols=32 Identities=34% Similarity=0.414 Sum_probs=27.8
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 84589969999878786889999999976078
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
-.+.+|.++.|-|+=||||||+.|.++.-+..
T Consensus 23 l~i~~Gei~~liGpNGaGKSTLlk~i~Gl~~p 54 (255)
T PRK11231 23 LSLPTGKITALIGPNGCGKSTLLKCFARLLTP 54 (255)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 89989979999999998199999999759888
No 97
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.86 E-value=0.0087 Score=37.51 Aligned_cols=30 Identities=30% Similarity=0.355 Sum_probs=26.3
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 458996999987878688999999997607
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
.+.+|.++.|-|+=||||||+.|.++..+.
T Consensus 23 ~i~~Ge~~aliG~nGaGKSTLl~~i~G~l~ 52 (273)
T PRK13547 23 RIEPGRVTALLGRNGAGKSTLLKVLAGELT 52 (273)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 998998999999999769999999956788
No 98
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.85 E-value=0.0084 Score=37.60 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=27.0
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 84589969999878786889999999976078
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
=.+++|.++.+.|+=||||||+.|.++.-+..
T Consensus 31 l~i~~GE~v~ivG~sGsGKSTLl~~i~Gl~~p 62 (228)
T PRK10584 31 LVVKRGETIALIGESGSGKSTLLAILAGLDDG 62 (228)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 89999989999999985899999999669999
No 99
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.84 E-value=0.0095 Score=37.29 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=26.7
Q ss_pred HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 998458996999987878688999999997607
Q gi|254780824|r 26 LASILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 26 la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
+.=.+.+|.++.+.|+=||||||+.|.++.-..
T Consensus 28 vs~~i~~GE~v~iiG~sGsGKSTLl~~i~Gl~~ 60 (233)
T PRK11629 28 VSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 289988998999999999409999999966999
No 100
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.84 E-value=0.0085 Score=37.57 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=28.5
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 8458996999987878688999999997607888
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
=.+.+|.++.|-|+=||||||+.|.++.-+..+.
T Consensus 33 ~~I~~GEiv~LiG~nGaGKSTLlr~i~Gl~~p~~ 66 (257)
T PRK11247 33 LHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPTA 66 (257)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 5887998999998998889999999965898888
No 101
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=95.84 E-value=0.009 Score=37.41 Aligned_cols=26 Identities=38% Similarity=0.425 Sum_probs=23.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 99987878688999999997607888
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
|+|.|+=|+|||++++.+++.+|..-
T Consensus 2 VLL~GppG~GKT~l~~~lA~~~~~~~ 27 (131)
T pfam07726 2 VLLEGVPGLAKTLLARTLARSLGLDF 27 (131)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCC
T ss_conf 87898998769999999999959981
No 102
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=95.83 E-value=0.009 Score=37.42 Aligned_cols=30 Identities=37% Similarity=0.523 Sum_probs=26.2
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 845899699998787868899999999760
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFL 57 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~l 57 (162)
-.+++|.++.+-|+=||||||+.|.+..-.
T Consensus 18 l~v~~Ge~v~iiGpNGaGKSTLlk~i~Gl~ 47 (245)
T PRK03695 18 GEVRAGEILHLVGPNGAGKSTLLARMAGLL 47 (245)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 999599899999789941999999984668
No 103
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.83 E-value=0.044 Score=33.29 Aligned_cols=133 Identities=21% Similarity=0.206 Sum_probs=72.5
Q ss_pred HHHHHHHHHCCCCC---EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH------HHCC-C-CCCEEEEEEEC
Q ss_conf 99999998458996---999987878688999999997607888530245202011------0037-8-86089998651
Q gi|254780824|r 21 CLGRHLASILRLGD---CLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLV------QLYD-A-SIPVAHFDFYR 89 (162)
Q Consensus 21 ~la~~la~~l~~g~---ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~------~~Y~-~-~~~i~H~DlYR 89 (162)
...+.|.+.+..|. ..+|.|+=|+||||++|.++++|.+.. .|+..-| .... + ...+..+|.=.
T Consensus 23 ~vv~~L~nai~~~rl~HAyLFsGprG~GKTt~ArilAk~LnC~~-----~~~~~PCg~C~sC~~i~~g~~~DviEidaas 97 (560)
T PRK06647 23 FVVETLKHSIEKNKIANAYIFSGPRGVGKTSSARAFARCLNCVN-----GPTIMPCGECFSCKSIDNDSSLDVIEIDGAS 97 (560)
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHHCCCCCCEEEECCCC
T ss_conf 99999999997499774366328998789999999999965999-----9998888788788887459998757643645
Q ss_pred CCCHHHHHCCCHHHH-CC-----CCEEEEECHHHHHC--------C---CCCCEEEEEEEECCC-------EEEEEEE--
Q ss_conf 789777530583675-08-----97899998556320--------4---995409999987398-------7699999--
Q gi|254780824|r 90 LSSHQEVVELGFDEI-LN-----ERICIIEWPEIGRS--------L---LPKKYIDIHLSQGKT-------GRKATIS-- 143 (162)
Q Consensus 90 L~~~~E~~~lg~~e~-~~-----~~i~lIEWpe~~~~--------~---lp~~~i~I~i~~~~~-------~R~i~i~-- 143 (162)
=.+.+++.++ .+.. +. -.|.+|.=++.+.. . -|+..+.|-.....+ +|--.+.
T Consensus 98 n~~VddIR~l-~e~v~~~P~~~~yKV~IIDEahmLt~~A~NALLKtLEEPP~~~~FILaTte~~KI~~TI~SRCQ~f~Fk 176 (560)
T PRK06647 98 NTSVQDVRQI-KEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFR 176 (560)
T ss_pred CCCHHHHHHH-HHHHCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHCHHHHHHHHEEEECC
T ss_conf 4888999999-998632876687069996465655999999999986348875599997799476848999651041055
Q ss_pred --ECCHHHHHHHHHHHHH
Q ss_conf --5860899999999986
Q gi|254780824|r 144 --AERWIISHINQMNRST 159 (162)
Q Consensus 144 --~~~~~~~~l~~~~~~~ 159 (162)
....+..+++.+.++.
T Consensus 177 ~i~~~~I~~~L~~I~~~E 194 (560)
T PRK06647 177 LLSLEKIYEMLKKVCLED 194 (560)
T ss_pred CCCHHHHHHHHHHHHHHC
T ss_conf 599999999999999867
No 104
>KOG2004 consensus
Probab=95.83 E-value=0.014 Score=36.34 Aligned_cols=31 Identities=35% Similarity=0.443 Sum_probs=28.0
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 5899699998787868899999999760788
Q gi|254780824|r 30 LRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 30 l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
-..|.|+||.|+=|.|||...|+|+++||-+
T Consensus 435 s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk 465 (906)
T KOG2004 435 SVQGKILCFVGPPGVGKTSIAKSIARALNRK 465 (906)
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHCCC
T ss_conf 6788379986899877321899999984874
No 105
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.82 E-value=0.011 Score=36.81 Aligned_cols=32 Identities=28% Similarity=0.394 Sum_probs=27.7
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 84589969999878786889999999976078
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
=.+++|..+++.|+-||||||+++-++.-+-.
T Consensus 24 l~i~~G~~iaIvG~sGsGKSTLl~ll~gl~~p 55 (238)
T cd03249 24 LTIPPGKTVALVGSSGCGKSTVVSLLERFYDP 55 (238)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 99769999999999999899999998238618
No 106
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.81 E-value=0.01 Score=37.13 Aligned_cols=33 Identities=21% Similarity=0.370 Sum_probs=28.3
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 845899699998787868899999999760788
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
=.+++|.++.|-|+=||||||+.|.++.-+..+
T Consensus 21 ~~v~~Gei~gllG~NGaGKSTLl~~i~Gl~~p~ 53 (208)
T cd03268 21 LHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD 53 (208)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 688698199999999999999999995783789
No 107
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.80 E-value=0.01 Score=37.02 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=26.8
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 4589969999878786889999999976078
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
.+++|.++.|-|+-||||||+.+.+.--+..
T Consensus 24 ~v~~Gei~~liGpNGaGKSTLl~~i~Gl~~p 54 (242)
T TIGR03411 24 YVDPGELRVIIGPNGAGKTTMMDVITGKTRP 54 (242)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9889989999989997599999999679578
No 108
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.80 E-value=0.013 Score=36.39 Aligned_cols=36 Identities=31% Similarity=0.460 Sum_probs=29.6
Q ss_pred HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 998458996999987878688999999997607888
Q gi|254780824|r 26 LASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 26 la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
+.=.+++|.++.+.|.-|+||||+++.++.-+..++
T Consensus 23 isf~I~~Ge~vaIvG~sGsGKSTLl~lL~gl~~~~G 58 (275)
T cd03289 23 ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEG 58 (275)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf 079987999999999999979999999960357895
No 109
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.79 E-value=0.011 Score=37.00 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=26.5
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 458996999987878688999999997607
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
.+.+|.++.+-|+=||||||+.|.+..-+-
T Consensus 27 ~v~~Gei~~liGpnGaGKSTL~~~i~Gl~~ 56 (255)
T PRK11300 27 EVREQEVVSLIGPNGAGKTTVFNCLTGFYK 56 (255)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 989997999998999649999999967988
No 110
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=95.78 E-value=0.029 Score=34.34 Aligned_cols=38 Identities=26% Similarity=0.260 Sum_probs=31.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 996999987878688999999997607888530245202
Q gi|254780824|r 32 LGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTF 70 (162)
Q Consensus 32 ~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF 70 (162)
+..+++|.|+=|+||||-++-+++.||++-. +=+.|+.
T Consensus 44 ~~~iLlLtGPaG~GKTTTI~lLAkeLG~ei~-EW~NP~~ 81 (490)
T pfam03215 44 KQLILLLTGPSGCGKSTTVKVLSKELGIEII-EWSNPEY 81 (490)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCEEE-EECCCCC
T ss_conf 7318998798998899999999997596899-8148654
No 111
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.78 E-value=0.011 Score=37.00 Aligned_cols=31 Identities=32% Similarity=0.467 Sum_probs=26.9
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 8458996999987878688999999997607
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
-.+.+|.++.+-|+=|||||||+|.++.-+-
T Consensus 25 l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~ 55 (254)
T COG1121 25 LSVEKGEITALIGPNGAGKSTLLKAILGLLK 55 (254)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 9974896899999988888999999967876
No 112
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=95.78 E-value=0.01 Score=37.04 Aligned_cols=29 Identities=34% Similarity=0.457 Sum_probs=25.3
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 84589969999878786889999999976
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRF 56 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~ 56 (162)
=.+.+|.++.+-|+=||||||+.|.++.-
T Consensus 26 l~i~~Gei~~iiG~sGsGKSTLl~~i~gl 54 (257)
T PRK10619 26 LQANAGDVISIIGSSGSGKSTFLRCINFL 54 (257)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 68879979999989998199999999659
No 113
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.78 E-value=0.013 Score=36.56 Aligned_cols=32 Identities=28% Similarity=0.482 Sum_probs=28.0
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+++|.++.|-|+=||||||+.|.++.-+..+
T Consensus 22 ~v~~Gei~gllG~NGaGKTTll~~i~Gl~~p~ 53 (210)
T cd03269 22 SVEKGEIFGLLGPNGAGKTTTIRMILGIILPD 53 (210)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 88799599999899984999999996002668
No 114
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=95.77 E-value=0.012 Score=36.78 Aligned_cols=31 Identities=32% Similarity=0.321 Sum_probs=25.9
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 8458996999987878688999999997607
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
=.+++|.++.|-|+=||||||+.|.+..-+.
T Consensus 32 l~i~~Ge~~~liG~NGaGKSTLl~~l~gl~~ 62 (265)
T PRK10575 32 LTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP 62 (265)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 8987998999999999809999999956889
No 115
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.77 E-value=0.0095 Score=37.30 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=25.7
Q ss_pred HHHHCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 998458996999987878688999999997
Q gi|254780824|r 26 LASILRLGDCLTLSGDLGSGKSFLARSIIR 55 (162)
Q Consensus 26 la~~l~~g~ii~L~GdLGaGKTtfvr~i~~ 55 (162)
+.-.+++|.++++-|+=||||||+.|.++.
T Consensus 26 is~~i~~Ge~~~llGpnGaGKSTLl~~l~g 55 (192)
T cd03232 26 ISGYVKPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHHC
T ss_conf 388992883999999999988999999837
No 116
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.76 E-value=0.011 Score=36.83 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=24.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 99987878688999999997607888
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
|+|.|-+||||||+.|.+++.|+..-
T Consensus 2 I~LiG~~G~GKstigk~la~~l~~~f 27 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPF 27 (154)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 89988999988999999999979897
No 117
>PRK10895 putative ABC transporter ATP-binding protein YhbG; Provisional
Probab=95.76 E-value=0.012 Score=36.72 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=28.0
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+.+|.++.|-|+=||||||+.|.++.-+..+
T Consensus 25 ~i~~Gei~~liGpNGaGKSTLl~~i~Gl~~~~ 56 (241)
T PRK10895 25 TVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD 56 (241)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 98399799998899986999999996788888
No 118
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.76 E-value=0.012 Score=36.75 Aligned_cols=32 Identities=41% Similarity=0.507 Sum_probs=27.4
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+++|..+++.|+-|||||||.|.+..-+-..
T Consensus 24 ~i~~Ge~i~IvG~sGsGKSTLl~ll~gl~~p~ 55 (234)
T cd03251 24 DIPAGETVALVGPSGSGKSTLVNLIPRFYDVD 55 (234)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 98799999999899982999999996676678
No 119
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=95.74 E-value=0.047 Score=33.12 Aligned_cols=94 Identities=17% Similarity=0.192 Sum_probs=55.1
Q ss_pred HHHHHHHHCCCC---CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHH---HCC-CC-CCEEEEEEECCCCH
Q ss_conf 999999845899---69999878786889999999976078885302452020110---037-88-60899986517897
Q gi|254780824|r 22 LGRHLASILRLG---DCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQ---LYD-AS-IPVAHFDFYRLSSH 93 (162)
Q Consensus 22 la~~la~~l~~g---~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~---~Y~-~~-~~i~H~DlYRL~~~ 93 (162)
+.+.|.+.|..| ...+|.|.=|+||||.+|-|+++|++... +++---.-|. .-. |+ ..+.-+|.=-=.+.
T Consensus 24 v~~~L~nal~~~rl~haylf~G~rGvGKTt~ARi~Ak~lNC~~~--~~~~pcg~C~~C~~i~~g~~~d~~EiDaAs~~~v 101 (717)
T PRK08853 24 VLTALENALAHNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETG--ITSTPCGQCATCKEIDEGRFVDLLEIDAASRTKV 101 (717)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC--CCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCH
T ss_conf 99999999970997405761088988898999999998678999--9999788870267674478775245405656788
Q ss_pred HHHHCCCHHH--HCC----CCEEEEECHHHH
Q ss_conf 7753058367--508----978999985563
Q gi|254780824|r 94 QEVVELGFDE--ILN----ERICIIEWPEIG 118 (162)
Q Consensus 94 ~E~~~lg~~e--~~~----~~i~lIEWpe~~ 118 (162)
+++.+| ++. |.. -.|.+|.=-..+
T Consensus 102 dd~rel-~~~~~y~p~~~~yKvyiiDEvHml 131 (717)
T PRK08853 102 EDTREL-LDNVQYKPARGRFKVYLIDEVHML 131 (717)
T ss_pred HHHHHH-HHHCCCCCCCCCEEEEEEECHHHC
T ss_conf 999999-985554887785479998305443
No 120
>PRK10744 phosphate transporter subunit; Provisional
Probab=95.74 E-value=0.012 Score=36.67 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=26.6
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 8458996999987878688999999997607
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
=.+.+|.+++|-|+=||||||+.|.+..-++
T Consensus 31 l~i~~Ge~~~liG~nGaGKSTLlk~i~gl~~ 61 (257)
T PRK10744 31 LDIAKNQVTAFIGPSGCGKSTLLRTFNKMYE 61 (257)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9988998999999999819999999987651
No 121
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.74 E-value=0.012 Score=36.58 Aligned_cols=32 Identities=19% Similarity=0.454 Sum_probs=27.4
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+++|.++.+-|+=|||||||+|-++.-+-.+
T Consensus 21 ~v~~GEiv~ilGpNGaGKSTllk~i~G~l~p~ 52 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN 52 (177)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 55899899998999999999999996886788
No 122
>PRK13544 consensus
Probab=95.73 E-value=0.011 Score=36.82 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=28.2
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 845899699998787868899999999760788
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
=.+++|.++.|.|+=||||||+.|.++.-....
T Consensus 22 ~~i~~Gei~~l~G~NGsGKSTLl~~i~Gl~~p~ 54 (208)
T PRK13544 22 FTAKQNSLTLVIGNNGSGKTSLLRLLAGLIPIT 54 (208)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 898299499999999998999999995880689
No 123
>PRK08116 hypothetical protein; Validated
Probab=95.73 E-value=0.026 Score=34.65 Aligned_cols=53 Identities=23% Similarity=0.248 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHH----CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC--CCCCCHH
Q ss_conf 999999999984----5899699998787868899999999760788853--0245202
Q gi|254780824|r 18 NTICLGRHLASI----LRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDAL--EVLSPTF 70 (162)
Q Consensus 18 ~t~~la~~la~~----l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~--~V~SPTF 70 (162)
....+|+..++. ..++.=++|.|+.|+|||.++-++++.+--.+.. -++.|.+
T Consensus 89 ~a~~~a~~Y~~~f~~~~~~~~GLll~G~~GtGKThLa~aIa~~l~~~g~~V~~~~~~~l 147 (262)
T PRK08116 89 KAYKVAVKYVKKFEEMKKESVGLLLWGSPGNGKTYLAAAIANELIEKGVPVVFVNVPEL 147 (262)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHH
T ss_conf 99999999999898736468618998989998999999999999987993999889999
No 124
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.71 E-value=0.018 Score=35.60 Aligned_cols=49 Identities=29% Similarity=0.485 Sum_probs=33.7
Q ss_pred HHHHHCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCC--CCCCHHHHH
Q ss_conf 9998458996-999987878688999999997607888530--245202011
Q gi|254780824|r 25 HLASILRLGD-CLTLSGDLGSGKSFLARSIIRFLMHDDALE--VLSPTFTLV 73 (162)
Q Consensus 25 ~la~~l~~g~-ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~--V~SPTF~l~ 73 (162)
.+...+..|- ++.+.|++|||||..+|.++..+.-+.... +.-||++..
T Consensus 42 ~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~ 93 (269)
T COG3267 42 MLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDA 93 (269)
T ss_pred HHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHH
T ss_conf 9777775178559997447776369999999855788517998357630178
No 125
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.71 E-value=0.011 Score=36.92 Aligned_cols=29 Identities=38% Similarity=0.562 Sum_probs=25.5
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 84589969999878786889999999976
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRF 56 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~ 56 (162)
=.+++|.++.+-|+=||||||+.|.++.-
T Consensus 21 l~v~~Gei~~iiGpnGaGKSTLl~~i~G~ 49 (200)
T cd03217 21 LTIKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHCCC
T ss_conf 68879989999968999999999997077
No 126
>PRK13947 shikimate kinase; Provisional
Probab=95.71 E-value=0.012 Score=36.65 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=24.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 99987878688999999997607888
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
|+|.|-+||||||.-|.+++.|+..-
T Consensus 4 I~LiG~mGsGKTtiGk~La~~L~~~f 29 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKKVATTLSFGF 29 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 89979999988999999999979698
No 127
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=95.69 E-value=0.011 Score=36.86 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=22.7
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 458996999987878688999999997
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIR 55 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~ 55 (162)
.+.+|.++.+.|.-|||||||.|.++.
T Consensus 282 ~v~~GE~~~i~G~nGsGKSTLl~~l~G 308 (490)
T PRK10938 282 QVNPGEHWQIVGPNGAGKSTLLSLITG 308 (490)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 983898899986788879999999808
No 128
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.69 E-value=0.011 Score=36.86 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=26.6
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 84589969999878786889999999976078
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
=.+++|.++.+-|+=|||||||.|.++.-+..
T Consensus 25 l~i~~Ge~~~iiG~sGsGKTTll~~i~Gl~~p 56 (218)
T cd03255 25 LSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP 56 (218)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 99869989999999998699999999669999
No 129
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.69 E-value=0.014 Score=36.29 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=33.5
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 58996999987878688999999997607888530245202
Q gi|254780824|r 30 LRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTF 70 (162)
Q Consensus 30 l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF 70 (162)
++|+.=|+|.|+=|.|||.++|+++..++..-. .|+.|.+
T Consensus 163 i~pPkGvLLyGPPGtGKTllAkAvA~e~~~~fi-~v~~s~l 202 (390)
T PRK03992 163 IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI-RVVGSEL 202 (390)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE-EEEHHHH
T ss_conf 999972786898999789999999987488879-9667997
No 130
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.68 E-value=0.014 Score=36.30 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=27.7
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 845899699998787868899999999760788
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
=.+.+|.++.|-|+=||||||+.+.++.-+...
T Consensus 22 l~i~~Gei~~iiG~nGaGKSTLlk~i~Gl~~p~ 54 (211)
T cd03225 22 LTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT 54 (211)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 888499799998899998999999996467798
No 131
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=95.68 E-value=0.016 Score=35.88 Aligned_cols=73 Identities=22% Similarity=0.301 Sum_probs=48.2
Q ss_pred HHHHHHHHHCCCC---CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC-------C-CCCEEEEEEEC
Q ss_conf 9999999845899---69999878786889999999976078885302452020110037-------8-86089998651
Q gi|254780824|r 21 CLGRHLASILRLG---DCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD-------A-SIPVAHFDFYR 89 (162)
Q Consensus 21 ~la~~la~~l~~g---~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~-------~-~~~i~H~DlYR 89 (162)
.+.+.|.+.+..| ..-+|.|+=|+||||-+|=||++|.+. . ||..=|++=+ | ...|+=+|.==
T Consensus 21 ~iv~tL~NAi~~~ri~HAYLF~GpRGtGKTS~ARIfAKaLNC~-~-----~~~~PCn~C~~C~~i~~g~~~DviEiDAAS 94 (363)
T TIGR02397 21 HIVKTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ-G-----PDGEPCNECESCKEINSGSSLDVIEIDAAS 94 (363)
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCC-C-----CCCCCCCCCCHHHHHHCCCCCCEEEECCCC
T ss_conf 9999999999718966234502859976355899999986588-7-----877877775022776528986668864865
Q ss_pred CCCHHHHHCC
Q ss_conf 7897775305
Q gi|254780824|r 90 LSSHQEVVEL 99 (162)
Q Consensus 90 L~~~~E~~~l 99 (162)
=.+.+|+.+|
T Consensus 95 N~gVD~IR~l 104 (363)
T TIGR02397 95 NNGVDDIREL 104 (363)
T ss_pred CCCHHHHHHH
T ss_conf 6878899999
No 132
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=95.67 E-value=0.011 Score=36.81 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=28.5
Q ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9845899699998787868899999999760788
Q gi|254780824|r 27 ASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 27 a~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.=.+++|.++.|-|+=||||||+.|.++.-+-.+
T Consensus 28 s~~i~~Gei~~iiGpnGsGKSTLlk~i~Gl~~p~ 61 (269)
T PRK11831 28 SLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD 61 (269)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 6688799899999399975999999996798889
No 133
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.67 E-value=0.012 Score=36.57 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=29.2
Q ss_pred HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 99845899699998787868899999999760788
Q gi|254780824|r 26 LASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 26 la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
+.=.+++|..+.+.|+=|||||||++.++.-+...
T Consensus 40 inl~I~~Ge~vaIvG~sGsGKSTL~~ll~gl~~p~ 74 (257)
T cd03288 40 VKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF 74 (257)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 38998799999999999981999999996056678
No 134
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.67 E-value=0.018 Score=35.67 Aligned_cols=33 Identities=30% Similarity=0.530 Sum_probs=28.7
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 845899699998787868899999999760788
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
=.+++|..+.+.|.=||||||+.+.+..-+-..
T Consensus 29 l~i~~Ge~v~ivG~sGsGKSTLl~ll~g~~~p~ 61 (207)
T cd03369 29 FKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE 61 (207)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 898699999999999987999999999872888
No 135
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.66 E-value=0.013 Score=36.53 Aligned_cols=32 Identities=31% Similarity=0.483 Sum_probs=27.4
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+.+|.++.|-|+=||||||+.|.++.-+-.+
T Consensus 22 ~i~~Gei~gl~G~NGaGKSTLl~~i~Gl~~p~ 53 (173)
T cd03230 22 TVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD 53 (173)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 88799399998789979999999997685778
No 136
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.66 E-value=0.013 Score=36.42 Aligned_cols=33 Identities=27% Similarity=0.458 Sum_probs=28.2
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 845899699998787868899999999760788
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
=.+++|.++.+.|+=||||||+++.+..-+...
T Consensus 23 l~i~~Ge~i~ivG~sGsGKSTLl~ll~gl~~p~ 55 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT 55 (171)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 998599899999999983999999997677589
No 137
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=95.64 E-value=0.012 Score=36.74 Aligned_cols=31 Identities=26% Similarity=0.389 Sum_probs=27.0
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 4589969999878786889999999976078
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
.+++|.++.|-|+=||||||+.|.++.-+-.
T Consensus 27 ~i~~Gei~gllG~NGAGKTTllk~l~Gl~~p 57 (293)
T COG1131 27 EVEPGEIFGLLGPNGAGKTTLLKILAGLLKP 57 (293)
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9828959999899999899999999679778
No 138
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.64 E-value=0.014 Score=36.25 Aligned_cols=32 Identities=28% Similarity=0.459 Sum_probs=27.8
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+++|.++++.|+=|||||||+|.++.-+...
T Consensus 26 ~i~~Ge~v~ivG~sGsGKSTLl~ll~gl~~p~ 57 (221)
T cd03244 26 SIKPGEKVGIVGRTGSGKSSLLLALFRLVELS 57 (221)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 98699899999999998999999996797189
No 139
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.63 E-value=0.013 Score=36.52 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=27.4
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+++|.+++|-|+=||||||+.|.+..-+..+
T Consensus 22 ~v~~Gei~~liGpNGaGKSTL~~~i~Gl~~p~ 53 (230)
T TIGR03410 22 EVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK 53 (230)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 99999799999999940999999997799999
No 140
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.63 E-value=0.013 Score=36.38 Aligned_cols=32 Identities=31% Similarity=0.529 Sum_probs=27.8
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+++|.++.|-|+=||||||+.|.++.-+-..
T Consensus 21 ~i~~Ge~~~liGpNGaGKSTllk~i~Gl~~p~ 52 (213)
T cd03235 21 EVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT 52 (213)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 98599899999999986999999997687889
No 141
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.62 E-value=0.014 Score=36.34 Aligned_cols=32 Identities=28% Similarity=0.482 Sum_probs=27.8
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+++|..+++.|+=||||||+++.+..-+...
T Consensus 26 ~i~~G~~v~ivG~sGsGKSTLl~ll~gl~~p~ 57 (220)
T cd03245 26 TIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT 57 (220)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 98799999999999985999999996725478
No 142
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.62 E-value=0.014 Score=36.32 Aligned_cols=33 Identities=33% Similarity=0.561 Sum_probs=28.0
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 845899699998787868899999999760788
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
=.+++|..+.+.|+-|||||||++-+..-+...
T Consensus 23 ~~i~~G~~vaivG~sGsGKSTll~ll~gl~~p~ 55 (237)
T cd03252 23 LRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE 55 (237)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 998799999999999985999999996776579
No 143
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.61 E-value=0.015 Score=36.02 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=30.4
Q ss_pred HHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 9998458996999987878688999999997607888
Q gi|254780824|r 25 HLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 25 ~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
.+.=.+++|..+.+.|+=||||||+++-+++.+..+.
T Consensus 359 ~isl~i~~Ge~vaiVG~SGsGKSTL~~LL~r~ydp~~ 395 (575)
T PRK11160 359 GLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQ 395 (575)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 7158976998899988999759999999862367899
No 144
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.61 E-value=0.038 Score=33.67 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=22.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9998787868899999999760788
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
++|+|+=|+||||.++.+++.+..+
T Consensus 40 lLf~GppG~GKTt~a~~la~~l~~~ 64 (318)
T PRK00440 40 LLFAGPPGTGKTTAALALARELYGE 64 (318)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 9888959988999999999997698
No 145
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.61 E-value=0.013 Score=36.52 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=24.9
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 84589969999878786889999999976
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRF 56 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~ 56 (162)
-.+.+|.++.+.|+-|+|||||.|++-.-
T Consensus 23 l~v~~Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 23 LSVEKGEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 16738978999899999888999999778
No 146
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.60 E-value=0.015 Score=36.17 Aligned_cols=32 Identities=25% Similarity=0.532 Sum_probs=28.1
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+++|..+++.|+-|||||||++.++.-+-..
T Consensus 25 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~ 56 (229)
T cd03254 25 SIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ 56 (229)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 98799999999999980999999996686678
No 147
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.60 E-value=0.019 Score=35.52 Aligned_cols=32 Identities=28% Similarity=0.295 Sum_probs=26.4
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 458996999987878688999999997607888
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
.+++| ++++.|+=||||||+++.+...+|...
T Consensus 19 ~ip~G-itaIvGpsGsGKSTLl~~i~~~lg~~~ 50 (197)
T cd03278 19 PFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQS 50 (197)
T ss_pred ECCCC-EEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 73898-289999999988999999998747776
No 148
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.58 E-value=0.066 Score=32.19 Aligned_cols=91 Identities=20% Similarity=0.189 Sum_probs=54.5
Q ss_pred HHHHHHHHHCCCC---CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC-------CC-CCEEEEEEEC
Q ss_conf 9999999845899---69999878786889999999976078885302452020110037-------88-6089998651
Q gi|254780824|r 21 CLGRHLASILRLG---DCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD-------AS-IPVAHFDFYR 89 (162)
Q Consensus 21 ~la~~la~~l~~g---~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~-------~~-~~i~H~DlYR 89 (162)
.+.+.|.+.|..| ...+|.|.=|.||||.+|-|+++|++.. .||..=|.+-. |+ ..+.-+|.=-
T Consensus 23 ~v~~~l~~a~~~~r~~haylf~g~rg~gktt~ari~ak~lnc~~-----~~~~~pcg~c~~c~~i~~g~~~d~~eidaas 97 (696)
T PRK06872 23 HILTALSNGLKENRLHHAYLFSGTRGVGKTSIARLFAKGLNCVH-----GVTATPCGECENCKAIEEGNFIDLIEIDAAS 97 (696)
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHHCCCCCCEEEEECCC
T ss_conf 99999999997198630475117898888899999999867899-----9999978886225767447877546750565
Q ss_pred CCCHHHHHCCCHHH--HCC----CCEEEEECHHH
Q ss_conf 78977753058367--508----97899998556
Q gi|254780824|r 90 LSSHQEVVELGFDE--ILN----ERICIIEWPEI 117 (162)
Q Consensus 90 L~~~~E~~~lg~~e--~~~----~~i~lIEWpe~ 117 (162)
-...++..+| ++. |-. -.|.+|.=-..
T Consensus 98 ~~~v~~~r~l-~~~~~~~p~~~~~kvy~idevhm 130 (696)
T PRK06872 98 RTKVEDTREL-LDNVQYKPVVGRFKVYLIDEVHM 130 (696)
T ss_pred CCCHHHHHHH-HHHCCCCCCCCCEEEEEEEHHHH
T ss_conf 5788999999-98454577677547999700544
No 149
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.58 E-value=0.018 Score=35.67 Aligned_cols=37 Identities=32% Similarity=0.401 Sum_probs=30.6
Q ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9999845899699998787868899999999760788
Q gi|254780824|r 24 RHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 24 ~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
+.+.=.+++|..+.+.|+=|+||||+++-+.+-+...
T Consensus 332 ~~isl~I~~Ge~vaIVG~SGsGKSTLl~LL~g~y~p~ 368 (569)
T PRK10789 332 ENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS 368 (569)
T ss_pred CCCCCEECCCCEEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 0765688899789987999998799999999776426
No 150
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.58 E-value=0.015 Score=36.07 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=28.8
Q ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9845899699998787868899999999760788
Q gi|254780824|r 27 ASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 27 a~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.=.+++|.++.+-|+=||||||+.|.++.-+...
T Consensus 19 sl~i~~GE~v~iiG~nGaGKSTLl~~i~Gll~p~ 52 (233)
T PRK10771 19 TLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPA 52 (233)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 8898899899999999981999999996599998
No 151
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=95.57 E-value=0.012 Score=36.77 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=29.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC
Q ss_conf 9999878786889999999976078885302452020110037
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD 77 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~ 77 (162)
|..+.|=|||||||+.+.+++...... .=.|+|++-
T Consensus 3 VtvitGFLGsGKTTlL~~lL~~~~g~k-------iAVIVNEfG 38 (323)
T COG0523 3 VTVITGFLGSGKTTLLNHLLANRDGKK-------IAVIVNEFG 38 (323)
T ss_pred EEEEEECCCCCHHHHHHHHHHCCCCCE-------EEEEEECCC
T ss_conf 799811677998999999985458980-------799985574
No 152
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.57 E-value=0.014 Score=36.29 Aligned_cols=30 Identities=33% Similarity=0.434 Sum_probs=25.7
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 458996999987878688999999997607
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
.+++|.++.+-|+=||||||+.+.+..-..
T Consensus 22 ~i~~Gei~~iiGpnGaGKSTl~~~i~Gl~~ 51 (213)
T cd03259 22 TVEPGEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 988998999999999739999999975999
No 153
>PRK10908 cell division protein FtsE; Provisional
Probab=95.57 E-value=0.013 Score=36.56 Aligned_cols=32 Identities=31% Similarity=0.353 Sum_probs=27.2
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 84589969999878786889999999976078
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
=.+++|.++.|.|+=||||||+.|.++.-+..
T Consensus 23 l~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p 54 (222)
T PRK10908 23 FHMRPGEMAFLTGHSGAGKSTLLKLICGIERP 54 (222)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 79969989999999980799999999659999
No 154
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=95.57 E-value=0.018 Score=35.64 Aligned_cols=56 Identities=25% Similarity=0.354 Sum_probs=41.9
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCC-----HHHHHHHCC
Q ss_conf 999999984589969999878786889999999976078885302452-----020110037
Q gi|254780824|r 21 CLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSP-----TFTLVQLYD 77 (162)
Q Consensus 21 ~la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SP-----TF~l~~~Y~ 77 (162)
.+-+.+.=.+++|+-+++.|+=|+|||++.|.++.-+.+... .+..| =|-=...|-
T Consensus 407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G-~I~~P~~~~~lflpQ~PY~ 467 (604)
T COG4178 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSG-RISMPADSALLFLPQRPYL 467 (604)
T ss_pred EEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-CEECCCCCCEEEECCCCCC
T ss_conf 421465265479987998789998788999999645856787-4416898755771488777
No 155
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.56 E-value=0.014 Score=36.24 Aligned_cols=33 Identities=30% Similarity=0.375 Sum_probs=27.5
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 845899699998787868899999999760788
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
=.+.+|.++.+-|+=||||||+.|.+..-+..+
T Consensus 22 ~~i~~Ge~~~liG~nGsGKSTll~~i~Gl~~~~ 54 (240)
T PRK09493 22 LNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT 54 (240)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 898799899999999980999999996389999
No 156
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.56 E-value=0.12 Score=30.57 Aligned_cols=73 Identities=15% Similarity=0.267 Sum_probs=49.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC-CCCCEEEEEEECCCCHHHHHCCCHHHHCCCCE
Q ss_conf 89969999878786889999999976078885302452020110037-88608999865178977753058367508978
Q gi|254780824|r 31 RLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD-ASIPVAHFDFYRLSSHQEVVELGFDEILNERI 109 (162)
Q Consensus 31 ~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~-~~~~i~H~DlYRL~~~~E~~~lg~~e~~~~~i 109 (162)
.++.+|.|-|+-|+||||=.--++.-+. -.|. .+..|.-.|-||+...+++.. +-+.++=.+
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~---------------~~~~~~kVaiITtDtYRIGA~EQLk~--Ya~im~vp~ 263 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYV---------------MLKKKKKVAIITTDTYRIGAVEQLKT--YADIMGVPL 263 (407)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHH---------------HHCCCCCEEEEEECCCHHHHHHHHHH--HHHHHCCCE
T ss_conf 4685799989988758879999999997---------------53257606899714411528999999--999869955
Q ss_pred EEEECHHHHHC
Q ss_conf 99998556320
Q gi|254780824|r 110 CIIEWPEIGRS 120 (162)
Q Consensus 110 ~lIEWpe~~~~ 120 (162)
+++.=|.-+..
T Consensus 264 ~vv~~~~el~~ 274 (407)
T COG1419 264 EVVYSPKELAE 274 (407)
T ss_pred EEECCHHHHHH
T ss_conf 99639999999
No 157
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.55 E-value=0.013 Score=36.39 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=27.2
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 845899699998787868899999999760788
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
=.+.+|.+++|-|+=||||||+.|.++.-+-.+
T Consensus 22 l~i~~Ge~~~lvGpnGaGKSTLl~~i~Gl~~p~ 54 (255)
T PRK11248 22 LTLESGELLVVLGPSGCGKTTLLNLIAGFVPPQ 54 (255)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 798699899999999846999999997599889
No 158
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.55 E-value=0.013 Score=36.42 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=27.2
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 84589969999878786889999999976078
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
=.+++|.++++.|+=||||||+.+.++.-+-.
T Consensus 26 l~i~~Ge~~~IvG~sGsGKSTLl~~i~G~~~~ 57 (204)
T cd03250 26 LEVPKGELVAIVGPVGSGKSSLLSALLGELEK 57 (204)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHCCCCCC
T ss_conf 99769989999999998589999998189525
No 159
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.55 E-value=0.014 Score=36.27 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=27.7
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+++|.++.|-|+=||||||++|.++.-+..+
T Consensus 24 ~v~~Gei~gllGpNGAGKTTl~~~l~Gl~~p~ 55 (301)
T TIGR03522 24 EAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD 55 (301)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 88598199999999981999999996795689
No 160
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.55 E-value=0.014 Score=36.19 Aligned_cols=33 Identities=27% Similarity=0.372 Sum_probs=28.3
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 845899699998787868899999999760788
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
=.+++|.++.|-|+=||||||+.|.++.-+..+
T Consensus 26 ~~i~~Gei~gllG~NGaGKSTllk~i~Gl~~p~ 58 (218)
T cd03266 26 FTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD 58 (218)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 898598299999999984999999997797789
No 161
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.54 E-value=0.017 Score=35.75 Aligned_cols=31 Identities=26% Similarity=0.208 Sum_probs=26.1
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 4589969999878786889999999976078
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
.+++|.++++.|+=|||||||++.+....+.
T Consensus 17 ~i~~Ge~~~iiG~nGsGKSTLl~~~~~~~~~ 47 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEGLYASGK 47 (176)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 8889989999999999899999988876103
No 162
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.54 E-value=0.015 Score=36.10 Aligned_cols=32 Identities=31% Similarity=0.435 Sum_probs=27.7
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+++|..+++.|.-||||||+++-++.-+-..
T Consensus 59 ~I~~Ge~vaIVG~sGSGKSTLl~lL~gl~~p~ 90 (282)
T cd03291 59 KIEKGEMLAITGSTGSGKTSLLMLILGELEPS 90 (282)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 98499999999999981999999995787278
No 163
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=95.54 E-value=0.012 Score=36.65 Aligned_cols=31 Identities=29% Similarity=0.420 Sum_probs=27.3
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 8458996999987878688999999997607
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
=.+++|.++.+-|+=|||||||.|.++.-+.
T Consensus 28 l~I~~Ge~~~iiGpNGaGKSTLlk~i~Gll~ 58 (265)
T PRK10253 28 VEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT 58 (265)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 8985997999999988399999999974988
No 164
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.53 E-value=0.013 Score=36.49 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=26.0
Q ss_pred HHHHCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 998458996999987878688999999997
Q gi|254780824|r 26 LASILRLGDCLTLSGDLGSGKSFLARSIIR 55 (162)
Q Consensus 26 la~~l~~g~ii~L~GdLGaGKTtfvr~i~~ 55 (162)
+.-.+++|.++.+-|+=||||||+.|.++-
T Consensus 28 vs~~v~~Gei~~ilGpnGaGKSTLl~~l~G 57 (194)
T cd03213 28 VSGKAKPGELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred CEEEEECCEEEEEECCCCCHHHHHHHHHHC
T ss_conf 388990881999998999519999999857
No 165
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=95.53 E-value=0.011 Score=36.81 Aligned_cols=25 Identities=36% Similarity=0.503 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 99998787868899999999760788
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
+|.+.|..||||||+++.|.+ +|+.
T Consensus 1 iigiTG~igSGKStv~~~l~~-~g~~ 25 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIP 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCE
T ss_conf 988637875789999999998-7990
No 166
>KOG3877 consensus
Probab=95.53 E-value=0.015 Score=36.09 Aligned_cols=47 Identities=28% Similarity=0.272 Sum_probs=35.3
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC-------CCCCCHHHHHHHC
Q ss_conf 5899699998787868899999999760788853-------0245202011003
Q gi|254780824|r 30 LRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDAL-------EVLSPTFTLVQLY 76 (162)
Q Consensus 30 l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~-------~V~SPTF~l~~~Y 76 (162)
-..+.||+..|++|||||+|+|.++..||....- -|.|-++-+-+-|
T Consensus 68 ~enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~ 121 (393)
T KOG3877 68 HENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLY 121 (393)
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCHHCC
T ss_conf 336507998577546701699999997197215643455143035676440014
No 167
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=95.52 E-value=0.014 Score=36.34 Aligned_cols=31 Identities=42% Similarity=0.500 Sum_probs=27.2
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 4589969999878786889999999976078
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
.+.+|.+++|-|+=|||||||.|.+...+..
T Consensus 25 ~i~~Ge~~~LvG~NGaGKSTL~k~l~G~l~~ 55 (490)
T PRK10938 25 TLNAGDSWAFVGSNGSGKSALARALAGELPL 55 (490)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9989989999979997799999999569987
No 168
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=95.52 E-value=0.015 Score=36.17 Aligned_cols=28 Identities=29% Similarity=0.551 Sum_probs=15.4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 5899699998787868899999999760
Q gi|254780824|r 30 LRLGDCLTLSGDLGSGKSFLARSIIRFL 57 (162)
Q Consensus 30 l~~g~ii~L~GdLGaGKTtfvr~i~~~l 57 (162)
+.+|.++.+-|.-||||||++|.++.-+
T Consensus 307 v~~GEi~gi~G~nGsGKsTL~k~l~Gl~ 334 (520)
T TIGR03269 307 VKEGEIFGIVGTSGAGKTTLSKIIAGVL 334 (520)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 7289689998788887899999994887
No 169
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.52 E-value=0.016 Score=35.93 Aligned_cols=35 Identities=29% Similarity=0.394 Sum_probs=28.9
Q ss_pred HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 99845899699998787868899999999760788
Q gi|254780824|r 26 LASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 26 la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
+.=.+++|.++++.|+=||||||+++-+..-+-..
T Consensus 33 is~~i~~Ge~vaIvG~sGsGKSTL~~ll~gl~~p~ 67 (226)
T cd03248 33 VSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ 67 (226)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 38998299999999999984999999996454678
No 170
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.51 E-value=0.02 Score=35.36 Aligned_cols=36 Identities=31% Similarity=0.452 Sum_probs=29.6
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 999998458996999987878688999999997607
Q gi|254780824|r 23 GRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 23 a~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
-+.+.=.+++|..+++.|+=||||||+++-+++-..
T Consensus 366 L~~is~~i~~Ge~vaIVG~SGsGKSTl~~LL~g~~p 401 (588)
T PRK11174 366 AGPLNFTLPAGQRVALVGPSGAGKTSLLNALLGFLP 401 (588)
T ss_pred CCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 036469974997899989998649999999987289
No 171
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.50 E-value=0.016 Score=35.90 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=27.6
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 458996999987878688999999997607888
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
.+++|.++.|-|+=|||||||.|.++.-+..+.
T Consensus 21 ti~~GEiv~liGpNGaGKSTLlk~l~Gll~p~~ 53 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDE 53 (246)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 465798999997999769999999977878886
No 172
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.49 E-value=0.015 Score=36.06 Aligned_cols=32 Identities=31% Similarity=0.380 Sum_probs=27.5
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+.+|.++.|-|+=||||||+.|.++.-+-.+
T Consensus 44 ~i~~GeivgilG~NGaGKSTLl~~i~Gl~~p~ 75 (224)
T cd03220 44 EVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD 75 (224)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 98389899999799981999999997587778
No 173
>PRK07261 topology modulation protein; Provisional
Probab=95.49 E-value=0.016 Score=35.89 Aligned_cols=26 Identities=35% Similarity=0.331 Sum_probs=23.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 99998787868899999999760788
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
-|+..|.-|||||||+|-+.+.+|+.
T Consensus 2 rI~IiG~sGsGKSTlAr~L~~~~~ip 27 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARFLGQHYNCP 27 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 89998899986899999999987979
No 174
>PRK13409 putative ATPase RIL; Provisional
Probab=95.49 E-value=0.014 Score=36.25 Aligned_cols=59 Identities=20% Similarity=0.240 Sum_probs=34.7
Q ss_pred EEEEEECCCHHHHH---HHHHH---HH--HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 48999829989999---99999---99--845899699998787868899999999760788853024
Q gi|254780824|r 7 HLTVIPIPNEKNTI---CLGRH---LA--SILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVL 66 (162)
Q Consensus 7 ~~~~i~l~~~~~t~---~la~~---la--~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~ 66 (162)
...+++|+++-+.. +.|.. |- ...++|.++.|-|.=||||||+.|-++-.+-.+. .+|.
T Consensus 65 ai~iinlp~~l~~~~~h~yg~n~f~l~~lp~p~~G~v~GLiG~NGaGKST~lkILsG~l~Pn~-G~v~ 131 (590)
T PRK13409 65 AISIVNLPEELEEDCVHRYGPNGFKLYGLPIPKEGKVTGILGPNGIGKSTAVKILSGELIPNL-GNYE 131 (590)
T ss_pred EEEEECCHHHHCCCCEEECCCCCEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCC-CCCC
T ss_conf 057614836757776054167743560789899987899889999989999999958714888-9778
No 175
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.49 E-value=0.016 Score=35.95 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=27.5
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+.+|.++.|-|+=||||||+.|.+..-+..+
T Consensus 22 ~v~~Gei~~llGpNGAGKSTll~~i~Gl~~p~ 53 (232)
T cd03218 22 SVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD 53 (232)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 98999599999999961999999997799998
No 176
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.47 E-value=0.015 Score=36.15 Aligned_cols=33 Identities=24% Similarity=0.225 Sum_probs=27.9
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 845899699998787868899999999760788
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
=.+++|.++.|-|+=||||||+.|.++.-+-..
T Consensus 25 ~~i~~Ge~~aliG~NGaGKSTLl~~i~Gll~p~ 57 (277)
T PRK13652 25 FIAGRKQRIAVIGPNGAGKSTLFKHFNGILKPT 57 (277)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 799899899999999947999999996699998
No 177
>PRK08118 topology modulation protein; Reviewed
Probab=95.47 E-value=0.017 Score=35.80 Aligned_cols=83 Identities=25% Similarity=0.149 Sum_probs=46.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCCCCEEEEEC
Q ss_conf 99998787868899999999760788853024520201100378860899986517897775305836750897899998
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDASIPVAHFDFYRLSSHQEVVELGFDEILNERICIIEW 114 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~~~i~lIEW 114 (162)
-|+..|.-|||||||+|-+.+.+|+.- +.|-+.| |-.=+.-...+|+... +.+.....--+||.
T Consensus 3 rI~IiG~~GsGKSTlAr~L~~~~~ip~--------~~LD~l~-------w~~~w~~~~~~e~~~~-~~~~~~~~~WIidG 66 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPV--------HHLDALF-------WKPNWEGVPKEEQRTV-QNELVKEDEWIIDG 66 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCE--------EECCCEE-------ECCCCCCCCHHHHHHH-HHHHHHCCCEEEEC
T ss_conf 799988999879999999999889697--------9644347-------6689946888999999-99998389879947
Q ss_pred --HHHHHCCCCCCEEEEEEEE
Q ss_conf --5563204995409999987
Q gi|254780824|r 115 --PEIGRSLLPKKYIDIHLSQ 133 (162)
Q Consensus 115 --pe~~~~~lp~~~i~I~i~~ 133 (162)
+.-+...++..+.-|-++.
T Consensus 67 ny~~~~~~r~~~aD~iI~Ld~ 87 (167)
T PRK08118 67 NYGGTMDIRLNAADTIIFLDI 87 (167)
T ss_pred CCHHHHHHHHHHCCEEEEECC
T ss_conf 717799877976999999859
No 178
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.47 E-value=0.015 Score=36.04 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=27.2
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+++|.++.|-|+=||||||+.|.++.-+-.+
T Consensus 43 ~i~~Gei~gLlGpNGaGKSTllk~l~Gl~~p~ 74 (236)
T cd03267 43 TIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT 74 (236)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 88489599999999830999999996494887
No 179
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.46 E-value=0.015 Score=36.13 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=27.3
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 84589969999878786889999999976078
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
-.+++|.+++|-|+=||||||+.|.++.-+..
T Consensus 28 ~~i~~Gei~~llG~nGsGKSTLl~~l~G~~~~ 59 (202)
T cd03233 28 GVVKPGEMVLVLGRPGSGCSTLLKALANRTEG 59 (202)
T ss_pred EEECCCEEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 89809849999989999889999998378789
No 180
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.46 E-value=0.016 Score=36.00 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=27.3
Q ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 984589969999878786889999999976078
Q gi|254780824|r 27 ASILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 27 a~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
.=.+++|.++++-|+=||||||+.|.+..-+..
T Consensus 25 s~~i~~Ge~~aiiG~NGsGKSTLl~~l~Gl~~p 57 (273)
T PRK13647 25 SLVIPEGSKTAILGPNGAGKSTLLLHLNGIYTA 57 (273)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 789889989999999997599999999669888
No 181
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.46 E-value=0.083 Score=31.60 Aligned_cols=91 Identities=16% Similarity=0.237 Sum_probs=53.8
Q ss_pred HHHHHHHHCCCC---CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHC-------CCC-CCEEEEEEECC
Q ss_conf 999999845899---6999987878688999999997607888530245202011003-------788-60899986517
Q gi|254780824|r 22 LGRHLASILRLG---DCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLY-------DAS-IPVAHFDFYRL 90 (162)
Q Consensus 22 la~~la~~l~~g---~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y-------~~~-~~i~H~DlYRL 90 (162)
+.+.|.+.+..| ...+|.|.=|.||||.+|-|+++|.+.. ++|..=|..- .|+ ..++-+|.=--
T Consensus 24 v~~~L~nal~~~rl~haylf~G~rGvGKTt~Ari~Ak~lNC~~-----~~~~~pCg~C~~C~~i~~g~~~D~~EiDaAs~ 98 (704)
T PRK08691 24 VVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCEN-----AQHGEPCGVCQSCTQIDAGRYVDLLEIDAASN 98 (704)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHHCCCCCCEEEEECCCC
T ss_conf 9999999998199752375027898788899999999967999-----99999787777678785589987477424544
Q ss_pred CCHHHHHCCCHHHH-CC-----CCEEEEECHHHH
Q ss_conf 89777530583675-08-----978999985563
Q gi|254780824|r 91 SSHQEVVELGFDEI-LN-----ERICIIEWPEIG 118 (162)
Q Consensus 91 ~~~~E~~~lg~~e~-~~-----~~i~lIEWpe~~ 118 (162)
.+.+++.+| ++.. +. -.|.+|-=...+
T Consensus 99 ~~vdd~R~l-~~~~~y~P~~~~yKVyiiDEvhmL 131 (704)
T PRK08691 99 TGIDNIREV-LENAQYAPTAGKYKVYIIDEVHML 131 (704)
T ss_pred CCHHHHHHH-HHHCCCCCCCCCEEEEEEECHHHC
T ss_conf 588999999-985346886785359998315443
No 182
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=95.45 E-value=0.049 Score=32.97 Aligned_cols=85 Identities=15% Similarity=0.226 Sum_probs=48.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHC----CCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCE
Q ss_conf 99987878688999999997607888530245202011003----788608999865178977753058367508--978
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLY----DASIPVAHFDFYRLSSHQEVVELGFDEILN--ERI 109 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y----~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i 109 (162)
|++-|+-|+|||+|++.++..--..+ -.||-. ..| ..+..-+++.++=..+.+++..+ ...++. +++
T Consensus 2 i~ivG~~~vGKTsli~r~~~~~f~~~----~~pTi~--~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~-~~~~~~~a~~~ 74 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKGTFVEE----YDPTIE--DSYRKTIVVDGETYTLDILDTAGQEEFSAM-RDLYIRQGDGF 74 (160)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCEE--EEEEEEEEECCEEEEEEEEECCCCHHHHHH-HHHHHHHCCEE
T ss_conf 99999699679999999961959987----788300--489999997669999999979996235578-89997643689
Q ss_pred EEE-------------ECHHHHHCCCCCCEE
Q ss_conf 999-------------985563204995409
Q gi|254780824|r 110 CII-------------EWPEIGRSLLPKKYI 127 (162)
Q Consensus 110 ~lI-------------EWpe~~~~~lp~~~i 127 (162)
+++ .|-+.+....+...+
T Consensus 75 ilvfd~~~~~Sf~~i~~~~~~i~~~~~~~~~ 105 (160)
T cd00876 75 ILVYSITDRESFEEIKGYREQILRVKDDEDI 105 (160)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9973289878999999999999997287886
No 183
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.45 E-value=0.018 Score=35.65 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=28.5
Q ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9845899699998787868899999999760788
Q gi|254780824|r 27 ASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 27 a~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.=.+.+|.++++-|+=||||||++|.++.-+...
T Consensus 27 sl~i~~GE~vaivG~nGsGKSTL~k~l~Gl~~p~ 60 (279)
T PRK13635 27 SFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE 60 (279)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 7688799899999999965999999997288888
No 184
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.44 E-value=0.019 Score=35.52 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=28.2
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 58996999987878688999999997607888
Q gi|254780824|r 30 LRLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 30 l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
-+.|.+|.|.|==||||||+++.+.+.|-..+
T Consensus 4 ~~kg~viW~TGLsGSGKTTiA~~l~~~L~~~g 35 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKY 35 (176)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 88867999789999989999999999999759
No 185
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=95.44 E-value=0.016 Score=35.85 Aligned_cols=30 Identities=23% Similarity=0.231 Sum_probs=25.9
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 458996999987878688999999997607
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
.+++|.++.|-|+=||||||+.|.++--.-
T Consensus 20 ~i~~g~i~~l~GpsGaGKTTLl~~iaGl~~ 49 (352)
T PRK11144 20 TLPAQGITAIFGRSGAGKTSLINLISGLTR 49 (352)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 988998999999999629999999976899
No 186
>PRK13537 lipooligosaccharide transporter ATP-binding subunit; Provisional
Probab=95.44 E-value=0.017 Score=35.81 Aligned_cols=32 Identities=25% Similarity=0.506 Sum_probs=27.3
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+++|.++.|-|+=||||||++|.+..-+..+
T Consensus 27 ~V~~Gei~gllGpNGAGKTTli~~l~Gl~~p~ 58 (304)
T PRK13537 27 HVQPGECFGLLGPNGAGKTTTLKMLLGLTHPD 58 (304)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 88699599999998972999999997795689
No 187
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.43 E-value=0.016 Score=35.98 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=25.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 9999878786889999999976078885
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHDDA 62 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~~~ 62 (162)
||...|+=|||||||+|.|.+.+|-...
T Consensus 1 IIgVaG~SGSGKTTv~~~i~~ifg~~~v 28 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLV 28 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCE
T ss_conf 9899788878699999999998584876
No 188
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.42 E-value=0.017 Score=35.79 Aligned_cols=34 Identities=29% Similarity=0.465 Sum_probs=27.9
Q ss_pred HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 9984589969999878786889999999976078
Q gi|254780824|r 26 LASILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 26 la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
+.=.+++|.++.+-|.=||||||++|.+..-+-.
T Consensus 21 vsl~i~~Ge~vaiiG~nGsGKSTL~~~l~Gll~P 54 (274)
T PRK13644 21 INLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP 54 (274)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 1779848999999999998099999999706858
No 189
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.41 E-value=0.018 Score=35.68 Aligned_cols=32 Identities=34% Similarity=0.405 Sum_probs=27.3
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+.+|.++.|-|+=||||||++|.+..-+-.+
T Consensus 22 ~i~~Gei~gliG~nGaGKSTL~~~i~Gl~~p~ 53 (236)
T cd03219 22 SVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT 53 (236)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 98899899999899973999999996798788
No 190
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=95.41 E-value=0.01 Score=37.15 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=22.4
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 45899699998787868899999999
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSII 54 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~ 54 (162)
.+.+|-||.|.|+=|+||||+---+.
T Consensus 27 ~i~~GEiViltGPSGSGKTTLLtLiG 52 (220)
T TIGR02982 27 EINPGEIVILTGPSGSGKTTLLTLIG 52 (220)
T ss_pred EECCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 77176479843788984688999887
No 191
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.41 E-value=0.017 Score=35.82 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=24.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 899699998787868899999999760788
Q gi|254780824|r 31 RLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 31 ~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
++..+|+|.|.=|+||||.+--++..+-..
T Consensus 73 ~~~~vI~lvG~~G~GKTTT~AKLA~~~~~~ 102 (270)
T PRK06731 73 KEVQTIALIGPTGVGKTTTLAKMAWQFHGK 102 (270)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 998189998889898899999999999867
No 192
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=95.41 E-value=0.018 Score=35.61 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=27.9
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 84589969999878786889999999976078
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
=.+.+|.++.+-|+=|+||||+++.++.-+..
T Consensus 28 f~i~~GEilgivGeSGsGKSTl~~~ilgll~~ 59 (327)
T PRK11022 28 YSVKQGEVVGIVGESGSGKSVSSLAIMGLIDY 59 (327)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 79889999999999987899999999748898
No 193
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.40 E-value=0.018 Score=35.60 Aligned_cols=31 Identities=29% Similarity=0.430 Sum_probs=26.5
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 4589969999878786889999999976078
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
.+++|.++.|-|+=||||||+.|.++.-+..
T Consensus 22 ~i~~Gei~~lvG~nGaGKSTl~~~i~Gl~~p 52 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTLMKILSGLYKP 52 (163)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9879989999988998999999999577689
No 194
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.38 E-value=0.026 Score=34.67 Aligned_cols=37 Identities=24% Similarity=0.367 Sum_probs=31.2
Q ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9999845899699998787868899999999760788
Q gi|254780824|r 24 RHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 24 ~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
+.+.=.+++|..+.+.|+=||||||+++-+.+-+...
T Consensus 358 ~~is~~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~ 394 (593)
T PRK10790 358 KNINLSVPSRNFVALVGHTGSGKSTLASLLMGYYPLT 394 (593)
T ss_pred HCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 2601044899789987999886899999999855678
No 195
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.38 E-value=0.041 Score=33.47 Aligned_cols=61 Identities=26% Similarity=0.352 Sum_probs=38.3
Q ss_pred EECCCHHHHHHH--HHHHHHHCCCC---CEEEEECCCCCCHHHHHHHHHHHHCCCCCC--CCCCCHHH
Q ss_conf 982998999999--99999845899---699998787868899999999760788853--02452020
Q gi|254780824|r 11 IPIPNEKNTICL--GRHLASILRLG---DCLTLSGDLGSGKSFLARSIIRFLMHDDAL--EVLSPTFT 71 (162)
Q Consensus 11 i~l~~~~~t~~l--a~~la~~l~~g---~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~--~V~SPTF~ 71 (162)
+.+.+..-..++ +..+.....++ .=++|+|+.|+|||.++.++++.|...+.. =|.-|+|.
T Consensus 130 ~~~~d~~R~~a~~~a~~F~~~y~~~~~~kGlyl~G~~G~GKTyL~~aian~La~~g~~v~~v~~p~~~ 197 (306)
T PRK08939 130 IDLDDLDRLDALMAALDFLEAYKPGEKVKGLYLYGDFGVGKTYLLAAIANELAKKGVSSTLVHFPEFI 197 (306)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHH
T ss_conf 48897789999999999999737698887788989999989999999999999869929998759999
No 196
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.37 E-value=0.02 Score=35.35 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=26.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 996999987878688999999997607888
Q gi|254780824|r 32 LGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 32 ~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
..-+|...|.=|||||||+|.+...|+...
T Consensus 7 ~~iiIgIaG~SgSGKTTv~~~l~~~~~~~~ 36 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVEK 36 (218)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 669999867987788999999999828675
No 197
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=95.37 E-value=0.019 Score=35.49 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=16.2
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 589969999878786889999999976
Q gi|254780824|r 30 LRLGDCLTLSGDLGSGKSFLARSIIRF 56 (162)
Q Consensus 30 l~~g~ii~L~GdLGaGKTtfvr~i~~~ 56 (162)
+.+|+.++|.|+=|||||||.|.++..
T Consensus 26 I~~Ge~vgLVG~NGsGKSTLl~iL~G~ 52 (632)
T PRK11147 26 IEDNERVCLVGRNGAGKSTLMKILSGE 52 (632)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989989999999998799999998389
No 198
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=95.36 E-value=0.018 Score=35.61 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=23.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 699998787868899999999760788
Q gi|254780824|r 34 DCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 34 ~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+|.|.|-.||||||+++.+.. +|+.
T Consensus 3 ~iIglTG~igsGKStva~~~~~-~G~~ 28 (201)
T COG0237 3 LIIGLTGGIGSGKSTVAKILAE-LGFP 28 (201)
T ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCE
T ss_conf 4999957887788999999997-7993
No 199
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.36 E-value=0.016 Score=35.86 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=26.7
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 8458996999987878688999999997607
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
-.+++|.++++-|+=||||||+.+.++.-+.
T Consensus 28 ~~i~~Ge~~~ilGpnGsGKSTLl~~i~G~~~ 58 (226)
T cd03234 28 LHVESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred EEEECCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 8991880999998999609999999967897
No 200
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.35 E-value=0.018 Score=35.54 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=26.9
Q ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 98458996999987878688999999997607
Q gi|254780824|r 27 ASILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 27 a~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
.=.+.+|.++.+-|+=|||||||+|.+..-+-
T Consensus 26 sl~I~~Ge~~aiiG~NGaGKSTLl~~i~Gll~ 57 (285)
T PRK13636 26 NINIKKGEVTAILGGNGAGKSTLFQNLNGILK 57 (285)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 78987998999999999809999999965988
No 201
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=95.35 E-value=0.019 Score=35.49 Aligned_cols=32 Identities=22% Similarity=0.501 Sum_probs=26.4
Q ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 98458996999987878688999999997607
Q gi|254780824|r 27 ASILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 27 a~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
.=.+..|.++.+-|+=|||||||+|.+..-+-
T Consensus 27 sl~I~~GE~v~IiG~nGsGKSTL~k~l~Gll~ 58 (304)
T PRK13651 27 STEINQGEFIAIIGQTGSGKTTFIEHLNALLL 58 (304)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 57985998999987999859999999966999
No 202
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.34 E-value=0.024 Score=34.90 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=30.9
Q ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9999845899699998787868899999999760788
Q gi|254780824|r 24 RHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 24 ~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
+.+.=.+++|..+++.|+=|+||||+++-+.+-+...
T Consensus 352 ~~isl~i~~Ge~vaiVG~SGsGKSTL~~LL~gly~p~ 388 (585)
T PRK13657 352 EDVSFEAKPGQTVAIVGPTGAGKSTLINLLHRVFDPQ 388 (585)
T ss_pred CCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 6703897599889998898986999999986015788
No 203
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=95.34 E-value=0.05 Score=32.95 Aligned_cols=68 Identities=18% Similarity=0.275 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHCC-CC--CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCC-CCEEEEEEECCC
Q ss_conf 8999999999998458-99--6999987878688999999997607888530245202011003788-608999865178
Q gi|254780824|r 16 EKNTICLGRHLASILR-LG--DCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDAS-IPVAHFDFYRLS 91 (162)
Q Consensus 16 ~~~t~~la~~la~~l~-~g--~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~~-~~i~H~DlYRL~ 91 (162)
+++...++..|.+.+. .. .=|++.|.=|+|||.=+|.+++.|--.. ..++.. ..+.++++=.++
T Consensus 23 deqI~~l~~~L~~~l~PG~~P~Ni~iYGkTGtGKT~vt~~v~~~l~~~~------------~~~d~~D~~~~~~NC~~~~ 90 (383)
T TIGR02928 23 DEQIEELAKALRPILRPGSRPSNIFIYGKTGTGKTAVTKYVMKELEEAA------------EDRDVRDVSTVYINCQILD 90 (383)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHH------------HCCCCCCEEEEEECCCCCC
T ss_conf 7899999999887506748987258878889878899999999999986------------2269971589997785468
Q ss_pred CHHH
Q ss_conf 9777
Q gi|254780824|r 92 SHQE 95 (162)
Q Consensus 92 ~~~E 95 (162)
+.-.
T Consensus 91 T~y~ 94 (383)
T TIGR02928 91 TSYQ 94 (383)
T ss_pred CHHH
T ss_conf 4699
No 204
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.33 E-value=0.019 Score=35.46 Aligned_cols=27 Identities=37% Similarity=0.396 Sum_probs=23.7
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 845899699998787868899999999
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSII 54 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~ 54 (162)
=.+.+|.++.|-|+=||||||+.|.+.
T Consensus 23 l~i~~Ge~~~iiG~nGaGKSTLl~~l~ 49 (242)
T PRK11124 23 LDCPQGETLVLLGPSGAGKSSLLRVLN 49 (242)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 788799899999999971999999996
No 205
>PRK00625 shikimate kinase; Provisional
Probab=95.33 E-value=0.02 Score=35.32 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=24.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 999987878688999999997607888
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
-|+|.|-+||||||.-|.+++.||..-
T Consensus 2 nI~LIG~mGsGKStiGk~LA~~l~~~F 28 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPF 28 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 299989999988999999999939995
No 206
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=95.33 E-value=0.018 Score=35.66 Aligned_cols=30 Identities=37% Similarity=0.586 Sum_probs=26.0
Q ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 984589969999878786889999999976
Q gi|254780824|r 27 ASILRLGDCLTLSGDLGSGKSFLARSIIRF 56 (162)
Q Consensus 27 a~~l~~g~ii~L~GdLGaGKTtfvr~i~~~ 56 (162)
.=.+.+|.++.+-|+=|+||||++|.++.-
T Consensus 32 s~~i~~GE~l~ivGeSGsGKSTL~r~i~gl 61 (266)
T PRK10419 32 SLTLKSGETVALLGRSGCGKSTLARLLVGL 61 (266)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 758889989999999997799999999669
No 207
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=95.33 E-value=0.019 Score=35.53 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=22.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9998787868899999999760788
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
|+|.|+-|+|||++++.+++.+...
T Consensus 2 vll~Gp~G~GKT~la~~la~~l~~~ 26 (139)
T pfam07728 2 VLLVGPPGTGKSELAERLAAALSNR 26 (139)
T ss_pred EEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf 8999899756999999999980798
No 208
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.32 E-value=0.02 Score=35.33 Aligned_cols=36 Identities=33% Similarity=0.474 Sum_probs=30.4
Q ss_pred HHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 999845899699998787868899999999760788
Q gi|254780824|r 25 HLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 25 ~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+.=.+++|..+++.|+=||||||+++-+++-+...
T Consensus 360 ~isl~I~~G~~vaiVG~SGsGKSTL~~LL~gly~p~ 395 (581)
T PRK11176 360 NINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID 395 (581)
T ss_pred CCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 663357999443122899986789999998536678
No 209
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.30 E-value=0.038 Score=33.67 Aligned_cols=131 Identities=21% Similarity=0.248 Sum_probs=65.4
Q ss_pred HHHHHHHHCCCC---CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHC-------CCC-CCEEEEEEECC
Q ss_conf 999999845899---6999987878688999999997607888530245202011003-------788-60899986517
Q gi|254780824|r 22 LGRHLASILRLG---DCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLY-------DAS-IPVAHFDFYRL 90 (162)
Q Consensus 22 la~~la~~l~~g---~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y-------~~~-~~i~H~DlYRL 90 (162)
..+.|.+.+..| ...+|.|+=|+||||++|.|+++|.+.. .|+-.-|..- .++ +.+..+|.=--
T Consensus 22 iv~~L~nAi~~~Rl~HAYLFsGPrGvGKTt~ArifAkaLnC~~-----~~~~~PCg~C~sC~~i~~g~hpDViEiDaasn 96 (523)
T PRK08451 22 VSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFSRALVCEQ-----GPSSTPCGTCAQCQAALEGRHIDIIEMDAASN 96 (523)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHHCCCCCCEEEECCCCC
T ss_conf 9999999998599671587578998688999999999975999-----99989888788899986489998551055333
Q ss_pred CCHHHHHCCCHHHH-C----C-CCEEEEECHHHHHC--------CC---CCCEEEEEEEECCC-------EEEE--EEE-
Q ss_conf 89777530583675-0----8-97899998556320--------49---95409999987398-------7699--999-
Q gi|254780824|r 91 SSHQEVVELGFDEI-L----N-ERICIIEWPEIGRS--------LL---PKKYIDIHLSQGKT-------GRKA--TIS- 143 (162)
Q Consensus 91 ~~~~E~~~lg~~e~-~----~-~~i~lIEWpe~~~~--------~l---p~~~i~I~i~~~~~-------~R~i--~i~- 143 (162)
.+.+++.++ ++.. + . -.|.+|.=++++.. .| |+..+.|-.+...+ +|-- .+.
T Consensus 97 ~gID~IReL-ie~~~~~P~~gryKV~IIDEah~Lt~~A~NALLKTLEEPP~~vvFILaTTep~KLp~TIlSRCQ~f~Fk~ 175 (523)
T PRK08451 97 RGIDDIRNL-IEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQ 175 (523)
T ss_pred CCHHHHHHH-HHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCHHHCHHHHHHHHHCCCCCC
T ss_conf 689999999-9972358867972799982603048999999999703898783799975994768488874203110337
Q ss_pred -ECCHHHHHHHHHHHH
Q ss_conf -586089999999998
Q gi|254780824|r 144 -AERWIISHINQMNRS 158 (162)
Q Consensus 144 -~~~~~~~~l~~~~~~ 158 (162)
....+..+|..+..+
T Consensus 176 I~~~~I~~~L~~I~~~ 191 (523)
T PRK08451 176 IPQNSIISHLKTILNK 191 (523)
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 9999999999999998
No 210
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=95.30 E-value=0.04 Score=33.52 Aligned_cols=50 Identities=24% Similarity=0.234 Sum_probs=32.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHH----HHHHCC--CCCCEEEEE
Q ss_conf 999878786889999999976078885302452020----110037--886089998
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFT----LVQLYD--ASIPVAHFD 86 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~----l~~~Y~--~~~~i~H~D 86 (162)
++|+|+=|.||||++|-+++.++..-. .++.|... +..... ...+|+-+|
T Consensus 53 ~lf~GPPG~GKTTlAriiAk~~~~~~~-~~s~~~i~~~~di~~~l~~~~~~~ILFID 108 (234)
T pfam05496 53 VLLYGPPGLGKTTLANIIANEMGVNIR-ITSGPALEKPGDLAAILTNLEPGDVLFID 108 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEE-EECCHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 788789999888999999984087537-61426664389999999845899889996
No 211
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.30 E-value=0.02 Score=35.39 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=27.6
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+++|.++.|-|+=||||||+.|.++.-+..+
T Consensus 24 ~i~~Gei~~llG~NGaGKSTLl~~i~Gl~~p~ 55 (220)
T cd03263 24 NVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT 55 (220)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 98499599999899973999999996698788
No 212
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=95.30 E-value=0.053 Score=32.75 Aligned_cols=75 Identities=17% Similarity=0.316 Sum_probs=41.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCC--CCCCCHHHHHHHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCEEE
Q ss_conf 9998787868899999999760788853--0245202011003788608999865178977753058367508--97899
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDAL--EVLSPTFTLVQLYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ERICI 111 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~--~V~SPTF~l~~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i~l 111 (162)
|.+-|+-|||||||++-+-......... .-.+||...- ...-...=+++-+|=+.+.+.+..+ ...|+. +++++
T Consensus 2 ivilG~~~~GKTsll~~l~~~~~~~~~~~~~~~~~Tvg~~-~~~i~~~~~~l~iwD~~Gqe~~~~l-~~~y~~~a~~ii~ 79 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLN-IGTIEVGNARLKFWDLGGQESLRSL-WDKYYAECHAIIY 79 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEE-EEEEEECCEEEEEEECCCCHHHHHH-HHHHCCCCCEEEE
T ss_conf 9999999988889999887503676777655403531326-8999989999999968987888789-9874289878999
Q ss_pred E
Q ss_conf 9
Q gi|254780824|r 112 I 112 (162)
Q Consensus 112 I 112 (162)
|
T Consensus 80 V 80 (167)
T cd04160 80 V 80 (167)
T ss_pred E
T ss_conf 9
No 213
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=95.30 E-value=0.017 Score=35.78 Aligned_cols=32 Identities=28% Similarity=0.332 Sum_probs=24.4
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+.+|+.+.|.|+=|||||||.|-++..+..+
T Consensus 23 ~I~~Ge~vgLVG~NGsGKSTLlklL~G~~~~d 54 (638)
T PRK10636 23 TINPGQKVGLVGKNGCGKSTLLALLKNEISAD 54 (638)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHCCCCCCC
T ss_conf 99899899998899988999999980899888
No 214
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.29 E-value=0.022 Score=35.03 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=28.4
Q ss_pred HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 99845899699998787868899999999760788
Q gi|254780824|r 26 LASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 26 la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
+.=.+++|.++++-|+=||||||+.|.++.-+...
T Consensus 28 is~~i~~Ge~vaiiG~sGsGKSTLl~ll~Gl~~p~ 62 (269)
T PRK13648 28 VSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK 62 (269)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 58998599899999999997999999996497998
No 215
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=95.29 E-value=0.019 Score=35.41 Aligned_cols=46 Identities=24% Similarity=0.332 Sum_probs=31.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCH
Q ss_conf 99998787868899999999760788853024520201100378860899986517897
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDASIPVAHFDFYRLSSH 93 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~~~~i~H~DlYRL~~~ 93 (162)
.|.+.|+=|+|||||+|.++..+..... -+.|. -++++.+.+++..
T Consensus 2 ~i~i~G~aG~GKTtll~kl~~~wa~g~~----~~~~~---------~vf~~~~r~~~~~ 47 (165)
T pfam05729 2 TVILQGEAGSGKTTLLQKLALLWAQGKL----PQDFD---------FVFFLPCRELSRS 47 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCC----CCCCC---------EEEEEEHHHHCCC
T ss_conf 8999827989899999999999986984----36972---------8999995670777
No 216
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.26 E-value=0.02 Score=35.28 Aligned_cols=28 Identities=32% Similarity=0.445 Sum_probs=24.6
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 4589969999878786889999999976
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRF 56 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~ 56 (162)
.+.+|.++++.|+=|+|||||.+.++.-
T Consensus 20 ~i~~Ge~~~i~GpSGsGKSTLL~~i~gl 47 (206)
T TIGR03608 20 TIEKGKMVAIVGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 9869989999879997099999999759
No 217
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed
Probab=95.26 E-value=0.028 Score=34.45 Aligned_cols=92 Identities=18% Similarity=0.213 Sum_probs=54.2
Q ss_pred HHHHHHHHHCCCC---CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHC------C-CC-CCEEEEEEEC
Q ss_conf 9999999845899---6999987878688999999997607888530245202011003------7-88-6089998651
Q gi|254780824|r 21 CLGRHLASILRLG---DCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLY------D-AS-IPVAHFDFYR 89 (162)
Q Consensus 21 ~la~~la~~l~~g---~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y------~-~~-~~i~H~DlYR 89 (162)
.+.+.|.+.|..+ .-.+|.|.=|.||||.+|-|+++|++.. .||..=|+.- . |+ ..++-+|.--
T Consensus 23 ~~~~~l~~~~~~~~~~~a~l~~g~rg~gkt~~ar~~ak~lnc~~-----~~~~~pc~~c~~c~~i~~~~~~d~~e~d~as 97 (705)
T PRK05648 23 HVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNCET-----GVSSTPCGECSVCREIDEGRFVDLIEVDAAS 97 (705)
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHHCCCCCCEEEECCCC
T ss_conf 99999999997098630465007898889899999999867789-----9988978776004666248977634451554
Q ss_pred CCCHHHHHCCCHHH--HCC----CCEEEEECHHHH
Q ss_conf 78977753058367--508----978999985563
Q gi|254780824|r 90 LSSHQEVVELGFDE--ILN----ERICIIEWPEIG 118 (162)
Q Consensus 90 L~~~~E~~~lg~~e--~~~----~~i~lIEWpe~~ 118 (162)
=.+.++..+| ++. |-. -.|.+|.=-..+
T Consensus 98 ~~~v~~~r~~-~~~~~~~p~~~~~kv~~idevhml 131 (705)
T PRK05648 98 RTKVEDTREL-LDNVQYAPTRGRYKVYLIDEVHML 131 (705)
T ss_pred CCCHHHHHHH-HHHCCCCCCCCCEEEEEEEHHHHC
T ss_conf 4788999999-985551776774579998426541
No 218
>KOG0651 consensus
Probab=95.26 E-value=0.029 Score=34.38 Aligned_cols=44 Identities=27% Similarity=0.333 Sum_probs=36.3
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHC
Q ss_conf 58996999987878688999999997607888530245202011003
Q gi|254780824|r 30 LRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLY 76 (162)
Q Consensus 30 l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y 76 (162)
++++..++|+|+=|.|||.++|.+++.+|++.. ..+.=.|+.-|
T Consensus 163 Ik~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl---~v~ss~lv~ky 206 (388)
T KOG0651 163 IKPPKGLLLYGPPGTGKTLLARAVAATMGVNFL---KVVSSALVDKY 206 (388)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEE---EEEHHHHHHHH
T ss_conf 778825687679998645999999986598547---74476663300
No 219
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=95.25 E-value=0.022 Score=35.12 Aligned_cols=38 Identities=29% Similarity=0.354 Sum_probs=31.4
Q ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 99998458996999987878688999999997607888
Q gi|254780824|r 24 RHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 24 ~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
+.+.=.+++|..+++.|+=||||||+++-+++-+-...
T Consensus 340 ~~isl~i~~Ge~vaiVG~SGsGKSTL~~LL~r~y~p~~ 377 (547)
T PRK10522 340 GPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQS 377 (547)
T ss_pred CCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 78047985998899989999977999999828966999
No 220
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=95.25 E-value=0.087 Score=31.48 Aligned_cols=133 Identities=17% Similarity=0.221 Sum_probs=72.4
Q ss_pred HHHHHHHHCCCC---CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHH------HHHHCC-C-CCCEEEEEEECC
Q ss_conf 999999845899---69999878786889999999976078885302452020------110037-8-860899986517
Q gi|254780824|r 22 LGRHLASILRLG---DCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFT------LVQLYD-A-SIPVAHFDFYRL 90 (162)
Q Consensus 22 la~~la~~l~~g---~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~------l~~~Y~-~-~~~i~H~DlYRL 90 (162)
..+.|.+.+..| ...+|.|+=|+||||.+|-++++|.+... +|... .|.... + ...++-+|.=--
T Consensus 25 vv~~L~nai~~~ri~HAyLF~GprGtGKTT~ArilAkaLnC~~~----~~~~~pCg~C~~C~~I~~g~~~DViEiDaAs~ 100 (462)
T PRK06305 25 VVTVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNP----TEDQEPCNQCAICKEISSGTSLDVIEIDGASH 100 (462)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC----CCCCCCCCCCHHHHHHHCCCCCCEEEECCCCC
T ss_conf 99999999984997623430389985999999999999679999----88889887668889986389998686435534
Q ss_pred CCHHHHHCCCHHHH-CC--C---CEEEEECHHHHHC--------C---CCCCEEEEEEEECCC-------EEEEEEE---
Q ss_conf 89777530583675-08--9---7899998556320--------4---995409999987398-------7699999---
Q gi|254780824|r 91 SSHQEVVELGFDEI-LN--E---RICIIEWPEIGRS--------L---LPKKYIDIHLSQGKT-------GRKATIS--- 143 (162)
Q Consensus 91 ~~~~E~~~lg~~e~-~~--~---~i~lIEWpe~~~~--------~---lp~~~i~I~i~~~~~-------~R~i~i~--- 143 (162)
.+.+++.++ .+.. +. . .|.+|.=.+.+.. . -|...+.|-.....+ +|--.+.
T Consensus 101 ~gVddIRel-~e~v~~~P~~~~yKVyIIDEvhmLs~~AfNALLKtLEEPP~~v~FILaTTe~~KIp~TIlSRCQrf~F~~ 179 (462)
T PRK06305 101 RGIEDIRQI-NETVLFTPSKSQYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKR 179 (462)
T ss_pred CCHHHHHHH-HHHHCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHHCCCCCEEEEEEECCHHHCCHHHHHHHHEEECCC
T ss_conf 466899999-9771008867750599981521179999999999861898774999981881428547876540233257
Q ss_pred -ECCHHHHHHHHHHHHH
Q ss_conf -5860899999999986
Q gi|254780824|r 144 -AERWIISHINQMNRST 159 (162)
Q Consensus 144 -~~~~~~~~l~~~~~~~ 159 (162)
....+.+++..+.++.
T Consensus 180 i~~~~I~~~L~~I~~~E 196 (462)
T PRK06305 180 IPEETIIDKLALIAQQD 196 (462)
T ss_pred CCHHHHHHHHHHHHHHC
T ss_conf 99999999999999983
No 221
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.25 E-value=0.022 Score=35.09 Aligned_cols=29 Identities=34% Similarity=0.405 Sum_probs=25.6
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 45899699998787868899999999760
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFL 57 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~l 57 (162)
.+++|.++.+-|+=|||||||.|.++.-+
T Consensus 22 ~i~~Ge~~~iiG~SGsGKSTll~~i~gL~ 50 (227)
T cd03260 22 DIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88799899999999981999999997445
No 222
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.24 E-value=0.021 Score=35.21 Aligned_cols=34 Identities=29% Similarity=0.438 Sum_probs=27.7
Q ss_pred HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 9984589969999878786889999999976078
Q gi|254780824|r 26 LASILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 26 la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
+.=.+.+|.++++-|+=||||||++|.+..-+..
T Consensus 26 vsl~I~~Ge~~aiiG~nGsGKSTLl~~l~GLl~p 59 (286)
T PRK13646 26 VNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP 59 (286)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 1779869989999999998199999999707888
No 223
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=95.24 E-value=0.021 Score=35.21 Aligned_cols=32 Identities=38% Similarity=0.618 Sum_probs=27.9
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+.+|.++.|-|+=||||||++|.++.-+..+
T Consensus 29 ~v~~Gei~gllGpNGAGKSTli~~l~Gl~~p~ 60 (306)
T PRK13536 29 TVASGECFGLLGPNGAGKSTIARMILGMTSPD 60 (306)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 88599699999998980999999996795789
No 224
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.23 E-value=0.11 Score=30.79 Aligned_cols=90 Identities=22% Similarity=0.275 Sum_probs=52.4
Q ss_pred HHHHHHHHCCCC---CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC-------CC-CCEEEEEEECC
Q ss_conf 999999845899---69999878786889999999976078885302452020110037-------88-60899986517
Q gi|254780824|r 22 LGRHLASILRLG---DCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD-------AS-IPVAHFDFYRL 90 (162)
Q Consensus 22 la~~la~~l~~g---~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~-------~~-~~i~H~DlYRL 90 (162)
..+.|.+.+..| ...+|.|.=|+||||.+|-|+++|.+.. .||.+=|.+-. |+ ..++-+|.=-=
T Consensus 24 v~~~l~na~~~~r~~haylf~G~rG~GKtt~ari~ak~lnc~~-----~~~~~pcg~c~~c~~i~~g~~~d~~eidaas~ 98 (643)
T PRK07994 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-----GITATPCGVCDNCREIEQGRFVDLIEIDAASR 98 (643)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHHCCCCCCEEEEECCCC
T ss_conf 9999999998298663487458998888899999999967999-----99999787677689886589887588636777
Q ss_pred CCHHHHHCCCHHH--HCC----CCEEEEECHHH
Q ss_conf 8977753058367--508----97899998556
Q gi|254780824|r 91 SSHQEVVELGFDE--ILN----ERICIIEWPEI 117 (162)
Q Consensus 91 ~~~~E~~~lg~~e--~~~----~~i~lIEWpe~ 117 (162)
.+.+++.+| ++. |.. -.|.+|.=-..
T Consensus 99 ~~vd~~rel-~~~~~y~p~~~r~kvyiidEvhm 130 (643)
T PRK07994 99 TKVEDTRDL-LDNVQYAPARGRFKVYLIDEVHM 130 (643)
T ss_pred CCHHHHHHH-HHHCCCCCCCCCEEEEEEECHHH
T ss_conf 888999999-98446688778536999722101
No 225
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=95.22 E-value=0.02 Score=35.27 Aligned_cols=32 Identities=28% Similarity=0.226 Sum_probs=26.9
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 84589969999878786889999999976078
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
-.+.+|++|.+.|+=|||||||.|.++..+..
T Consensus 345 ~~i~~Ge~iaivG~NGsGKSTLlk~l~G~~~p 376 (556)
T PRK11819 345 FKLPPGGIVGIIGPNGAGKSTLFKMITGQEQP 376 (556)
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 23578824789889877588999998386568
No 226
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.22 E-value=0.026 Score=34.65 Aligned_cols=41 Identities=20% Similarity=0.387 Sum_probs=33.2
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 99999998458996999987878688999999997607888
Q gi|254780824|r 21 CLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 21 ~la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
.|-+.|..-++.|.++++.|+-|+|||+|+.-|+.+..-.+
T Consensus 20 ~lD~~l~GG~p~g~~~li~G~~G~GKt~~~~~f~~~~~~~g 60 (241)
T PRK06067 20 EIDRKLGGGIPFGSLILIEGENDTGKSVLSQQFVWGALNQG 60 (241)
T ss_pred HHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 57865069977990899980799887999999999998679
No 227
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.19 E-value=0.024 Score=34.81 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=23.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 8996999987878688999999997607
Q gi|254780824|r 31 RLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 31 ~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
-+|.+++|.|+=||||||+.|++...+.
T Consensus 20 f~~~itaivG~NGaGKSTLl~~i~~~l~ 47 (204)
T cd03240 20 FFSPLTLIVGQNGAGKTTIIEALKYALT 47 (204)
T ss_pred EECCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 5088899998999999999999863047
No 228
>pfam03969 AFG1_ATPase AFG1-like ATPase. This family of proteins contains a P-loop motif and are predicted to be ATPases.
Probab=95.19 E-value=0.11 Score=30.78 Aligned_cols=113 Identities=17% Similarity=0.252 Sum_probs=74.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCC-------------------CCCCHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf 996999987878688999999997607888530-------------------2452020110037886089998651789
Q gi|254780824|r 32 LGDCLTLSGDLGSGKSFLARSIIRFLMHDDALE-------------------VLSPTFTLVQLYDASIPVAHFDFYRLSS 92 (162)
Q Consensus 32 ~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~-------------------V~SPTF~l~~~Y~~~~~i~H~DlYRL~~ 92 (162)
+..=++|+|++|.|||-+.-.|..++.+..... ..-|--.+.........+.-+|=.-+.|
T Consensus 60 ~~kGlYl~G~VGrGKTmLMDlFy~~lp~~~K~R~HFh~FM~~vH~~l~~~~~~~dpl~~va~~l~~~~~lLCfDEFqV~D 139 (361)
T pfam03969 60 PVRGLYLWGGVGRGKTHLMDSFFESLPGERKRRTHFHRFMFRVHDELTTLQGGDDPLPIAADRFANEARLLCFDEFEVDD 139 (361)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEEEECC
T ss_conf 99868988998886999999999867753444566789999999999997667763899999997258779976356167
Q ss_pred HHHHHCCC--HHHHCCCCEEEEECHHHHHC-----------CCC------CCEEEEEEEECCCEEEEEEEE
Q ss_conf 77753058--36750897899998556320-----------499------540999998739876999995
Q gi|254780824|r 93 HQEVVELG--FDEILNERICIIEWPEIGRS-----------LLP------KKYIDIHLSQGKTGRKATISA 144 (162)
Q Consensus 93 ~~E~~~lg--~~e~~~~~i~lIEWpe~~~~-----------~lp------~~~i~I~i~~~~~~R~i~i~~ 144 (162)
..+.--|+ |+.+++.|+++|==..+.++ ++| +..-.+.++...++|...+..
T Consensus 140 IaDAMIL~rLf~~Lf~~gvvlV~TSN~~P~~LY~~GLqR~~FlPfI~ll~~~~~v~~l~~~~DYR~~~~~~ 210 (361)
T pfam03969 140 IGDAMILGRLFEALFARGVSLVATSNTAPEQLYRNGLNRQRFLPAIDLLESHFEVVRVDGPVDYRLRTLEQ 210 (361)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCC
T ss_conf 88899999999999977978998089998998368741778899999999867899815987805465655
No 229
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.19 E-value=0.02 Score=35.32 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=34.7
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCHHHHH
Q ss_conf 58996999987878688999999997607888530245202011003788608999865178977753
Q gi|254780824|r 30 LRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDASIPVAHFDFYRLSSHQEVV 97 (162)
Q Consensus 30 l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~~~~i~H~DlYRL~~~~E~~ 97 (162)
|..|.||+|-|.=|+||||-+--++..+-..+. +.-+.-.|-||.-..+++.
T Consensus 203 l~~g~VIaLVGvnGvGKTTTiAKLA~~l~~~gk----------------kV~LVAaDTFRaAAiEQLk 254 (407)
T PRK12726 203 LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNR----------------TVGFITTDTFRSGAVEQFQ 254 (407)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHHHHHHCCC----------------CEEEEECCCCCHHHHHHHH
T ss_conf 036908999899989789999999999997799----------------1799970667788999999
No 230
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.18 E-value=0.023 Score=34.95 Aligned_cols=33 Identities=33% Similarity=0.423 Sum_probs=28.1
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 845899699998787868899999999760788
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
=.+++|.++.+-|+=||||||++|.+..-+..+
T Consensus 25 l~i~~GE~vaivG~nGsGKSTL~~~l~Gll~p~ 57 (276)
T PRK13650 25 FHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE 57 (276)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 799899899999999987999999997388988
No 231
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.18 E-value=0.023 Score=34.95 Aligned_cols=132 Identities=22% Similarity=0.267 Sum_probs=70.3
Q ss_pred HHHHHHHHCCCC---CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC-------C---CCCEEEEEEE
Q ss_conf 999999845899---69999878786889999999976078885302452020110037-------8---8608999865
Q gi|254780824|r 22 LGRHLASILRLG---DCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD-------A---SIPVAHFDFY 88 (162)
Q Consensus 22 la~~la~~l~~g---~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~-------~---~~~i~H~DlY 88 (162)
..+.|.+.+..| ...+|.|.=|.||||.+|-|+++|.+.. .||-.-|+.-. + +..++.+|.=
T Consensus 23 v~~~L~~Ai~~gri~HAYLFsGprG~GKTt~ARilAkaLNC~~-----~~~~~PCg~C~sC~~i~~g~~~~~DviEiDAA 97 (775)
T PRK07764 23 VTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCAQ-----GPTSTPCGVCDSCVALAPGGPGSLDVVEIDAA 97 (775)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHHCCCCCCCCEEEECCC
T ss_conf 9999999998199763376237888788899999999966899-----99989888876378886389888866873156
Q ss_pred CCCCHHHHHCCCHHHH-CC-----CCEEEEECHHHHHC--------CC---CCCEEEEEEEECCC-------EEEEEE--
Q ss_conf 1789777530583675-08-----97899998556320--------49---95409999987398-------769999--
Q gi|254780824|r 89 RLSSHQEVVELGFDEI-LN-----ERICIIEWPEIGRS--------LL---PKKYIDIHLSQGKT-------GRKATI-- 142 (162)
Q Consensus 89 RL~~~~E~~~lg~~e~-~~-----~~i~lIEWpe~~~~--------~l---p~~~i~I~i~~~~~-------~R~i~i-- 142 (162)
.-.+.+++.+| .+.. +. ..|.+|.=.+++.. .| |...+.|..+..-+ +|.-.+
T Consensus 98 S~~gVddiReL-~e~~~y~P~~~ryKVyIIDEaHmls~~afNALLKtLEEPP~hvvFIlaTTep~kip~TI~SRcq~f~F 176 (775)
T PRK07764 98 SHGGVDDAREL-RERAFFAPAQSRYRIFIIDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVIGTIRSRTHHYPF 176 (775)
T ss_pred CCCCHHHHHHH-HHHCCCCCCCCCEEEEEEECHHHHCHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCHHHHHHCCCCCC
T ss_conf 55688999999-98547687678635999853544079999999886227864627999548735471677641023452
Q ss_pred --EECCHHHHHHHHHHHHH
Q ss_conf --95860899999999986
Q gi|254780824|r 143 --SAERWIISHINQMNRST 159 (162)
Q Consensus 143 --~~~~~~~~~l~~~~~~~ 159 (162)
-....+.++|+++.++.
T Consensus 177 r~i~~~~~~~~l~~i~~~E 195 (775)
T PRK07764 177 RLVPPGTMRPYLERICAQE 195 (775)
T ss_pred CCCCHHHHHHHHHHHHHHC
T ss_conf 6699999999999999983
No 232
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.17 E-value=0.021 Score=35.19 Aligned_cols=32 Identities=31% Similarity=0.394 Sum_probs=27.2
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 84589969999878786889999999976078
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
=.+.+|.++++-|+=||||||++|.+..-+-.
T Consensus 29 l~I~~Ge~vaiiG~nGsGKSTL~~~l~Gll~P 60 (283)
T PRK13640 29 FSIPRGSWTALIGHNGSGKSTISKLINGLLLP 60 (283)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 69989999999999998799999999640378
No 233
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.17 E-value=0.022 Score=35.14 Aligned_cols=34 Identities=41% Similarity=0.625 Sum_probs=28.2
Q ss_pred HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 9984589969999878786889999999976078
Q gi|254780824|r 26 LASILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 26 la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
+.=.+.+|.++.+-|+=||||||+.|.++.-+-.
T Consensus 24 Isl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p 57 (228)
T cd03257 24 VSFSIKKGETLGLVGESGSGKSTLARAILGLLKP 57 (228)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 0789869989999999998699999999728987
No 234
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.17 E-value=0.025 Score=34.79 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=27.8
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+++|.++++.|+=|+||||+.+.++..+-..
T Consensus 23 ~i~~Ge~~~IvG~sGsGKSTLl~~l~g~~~~~ 54 (218)
T cd03290 23 RIPTGQLTMIVGQVGCGKSSLLLAILGEMQTL 54 (218)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 98699999999999980999999985556567
No 235
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=95.16 E-value=0.019 Score=35.42 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=24.0
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 458996999987878688999999997
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIR 55 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~ 55 (162)
.+.+|.+++|-|+=|||||||+|.+.-
T Consensus 22 ~i~~Gei~~LvG~sGsGKSTL~~~l~G 48 (520)
T TIGR03269 22 TIEEGEVLGILGRSGAGKSVLMHVLRG 48 (520)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 999998999999999699999999965
No 236
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.16 E-value=0.021 Score=35.25 Aligned_cols=32 Identities=31% Similarity=0.386 Sum_probs=27.5
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 84589969999878786889999999976078
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
=.+.+|.++.+-|+=||||||++|.++.-+..
T Consensus 28 ~~i~~Ge~~aiiG~sGsGKSTL~~~l~Gl~~~ 59 (277)
T PRK13642 28 FSITKGEWVSIIGQNGSGKSTTARLIDGLFEE 59 (277)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 99889989999999996899999999638998
No 237
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=95.16 E-value=0.019 Score=35.46 Aligned_cols=34 Identities=38% Similarity=0.523 Sum_probs=28.4
Q ss_pred HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 9984589969999878786889999999976078
Q gi|254780824|r 26 LASILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 26 la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
+.=.+.+|.++.|-|+=|+||||+++.++.-+..
T Consensus 35 Vsf~i~~GEilgivGeSGsGKSTl~~~i~gll~~ 68 (330)
T PRK09473 35 LNFSLRAGETLGIVGESGSGKSQTAFALMGLLAA 68 (330)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 4768889989999868987799999999768888
No 238
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=95.15 E-value=0.061 Score=32.42 Aligned_cols=72 Identities=19% Similarity=0.317 Sum_probs=43.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH---HHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCEE
Q ss_conf 99987878688999999997607888530245202011---003788608999865178977753058367508--9789
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLV---QLYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ERIC 110 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~---~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i~ 110 (162)
|.+-|+-|+|||+|++-++.+--... ..||...- ....-+...+++.++=..+.+++..+ ...++. ++++
T Consensus 3 ivvvG~~~vGKTSLi~r~~~~~f~~~----y~pTig~~~~~k~~~~~~~~~~l~iwDt~G~~~~~~~-~~~~~~~ad~~i 77 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGRFVSK----YLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEV-RNEFYKDTQGVL 77 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHH-HHHHHHHCCEEE
T ss_conf 99999599568999999963999998----5897655777999999999999999989997647899-999987477889
Q ss_pred EE
Q ss_conf 99
Q gi|254780824|r 111 II 112 (162)
Q Consensus 111 lI 112 (162)
+|
T Consensus 78 lv 79 (168)
T cd04119 78 LV 79 (168)
T ss_pred EE
T ss_conf 99
No 239
>PRK06921 hypothetical protein; Provisional
Probab=95.15 E-value=0.058 Score=32.52 Aligned_cols=44 Identities=23% Similarity=0.254 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHC-----CCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 99999999999845-----899699998787868899999999760788
Q gi|254780824|r 17 KNTICLGRHLASIL-----RLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 17 ~~t~~la~~la~~l-----~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+....|...++.. ....-++|.|+.|+|||.++-++++.|--.
T Consensus 95 k~a~~~a~eY~~~F~~i~~~~~~~l~f~G~~G~GKThLa~aIa~~Ll~~ 143 (265)
T PRK06921 95 KDAYECAVEYVKDFEKIQGCRKNSIALLGQPGSGKTHLLTAAANELMRK 143 (265)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 9999999999997787607776627997289898899999999999996
No 240
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=95.15 E-value=0.024 Score=34.86 Aligned_cols=29 Identities=34% Similarity=0.563 Sum_probs=18.3
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 45899699998787868899999999760
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFL 57 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~l 57 (162)
.+.+|.++.+.|.=|||||||.|.++..+
T Consensus 274 ~v~~GEi~gi~G~nGsGKsTL~~~l~Gl~ 302 (501)
T PRK10762 274 TLRKGEILGVSGLMGAGRTELMKVLYGAL 302 (501)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 76688189966788876889999981876
No 241
>PRK13764 ATPase; Provisional
Probab=95.15 E-value=0.038 Score=33.64 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=31.3
Q ss_pred HHHHHHHHHHCC-CCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 999999998458-996999987878688999999997607888
Q gi|254780824|r 20 ICLGRHLASILR-LGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 20 ~~la~~la~~l~-~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
..++.+|...|. ...=|+..|.=|||||||+++++..+.-.+
T Consensus 245 Y~l~~~l~~Rl~~~a~GilIaG~PGaGKsTfaqalA~~~~~~g 287 (605)
T PRK13764 245 YNLSEKLKERLEERAEGILIAGAPGAGKSTFAQALAEFYADMG 287 (605)
T ss_pred CCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 1678999998873366499977999977899999999998479
No 242
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.15 E-value=0.013 Score=36.38 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=27.3
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+.+|.++.|-|+=||||||+.|.++.-+..+
T Consensus 22 ~v~~GEi~~liG~nGaGKSTll~~l~G~~~p~ 53 (182)
T cd03215 22 EVRAGEIVGIAGLVGNGQTELAEALFGLRPPA 53 (182)
T ss_pred EECCCCEEEEECCCCCCCCHHHHHHCCCCCCC
T ss_conf 98599699998889999263778766986788
No 243
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=95.14 E-value=0.023 Score=34.94 Aligned_cols=31 Identities=26% Similarity=0.420 Sum_probs=27.3
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 4589969999878786889999999976078
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
.+++|.++.|-|+=||||||+.|.+...+..
T Consensus 24 ~I~~GEi~gLIGPNGAGKSTLLk~I~Gll~P 54 (409)
T PRK09536 24 SVREGHLVGVVGPNGAGKTTLLRAMNGLITP 54 (409)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9889989999999872799999999668888
No 244
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=95.14 E-value=0.019 Score=35.52 Aligned_cols=29 Identities=38% Similarity=0.493 Sum_probs=25.0
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 84589969999878786889999999976
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRF 56 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~ 56 (162)
=.+.+|.++.|-|+=|+||||++|.+..-
T Consensus 36 l~i~~GE~lgiVGeSGsGKSTL~~~l~gl 64 (327)
T PRK11308 36 FNLERGKTLAVVGESGCGKSTLARLLTMI 64 (327)
T ss_pred EEECCCCEEEEECCCCHHHHHHHHHHHCC
T ss_conf 79889999999999831999999999569
No 245
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.12 E-value=0.022 Score=35.10 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=28.3
Q ss_pred HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 9984589969999878786889999999976078
Q gi|254780824|r 26 LASILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 26 la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
+.=.+.+|.++++-|.=|||||||+|.+..-+-.
T Consensus 25 Isl~I~~Ge~vaiiG~nGsGKSTLl~~l~Gll~p 58 (288)
T PRK13643 25 IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP 58 (288)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 3679859989999999994799999999748888
No 246
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=95.12 E-value=0.023 Score=34.96 Aligned_cols=33 Identities=30% Similarity=0.457 Sum_probs=27.7
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 845899699998787868899999999760788
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
-.+.+|+.|+|.|+=|||||||.|.++..+-..
T Consensus 340 l~i~~Ge~ialvG~NGsGKSTLlk~l~G~l~p~ 372 (632)
T PRK11147 340 AQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD 372 (632)
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 335788779998898842779999860666899
No 247
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=95.12 E-value=0.021 Score=35.23 Aligned_cols=34 Identities=29% Similarity=0.236 Sum_probs=27.9
Q ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9845899699998787868899999999760788
Q gi|254780824|r 27 ASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 27 a~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.=.+.+|+.|.+.|+=|||||||.|.++..+...
T Consensus 332 sl~i~~GeriaIvG~NGsGKSTLlk~L~G~l~p~ 365 (638)
T PRK10636 332 KLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV 365 (638)
T ss_pred CCEECCCCEEEEECCCCCCHHHHHHHHCCCCCCC
T ss_conf 5056378479997478713889999972887888
No 248
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.10 E-value=0.028 Score=34.43 Aligned_cols=36 Identities=28% Similarity=0.366 Sum_probs=30.0
Q ss_pred HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 998458996999987878688999999997607888
Q gi|254780824|r 26 LASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 26 la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
+.-.+++|.++++-|+=|+||||+.|++++-+....
T Consensus 21 ls~~i~~G~i~~iiGpNG~GKSTLLk~l~~~l~p~~ 56 (258)
T COG1120 21 LSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKS 56 (258)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 368865997999989988899999999865678888
No 249
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.10 E-value=0.037 Score=33.74 Aligned_cols=68 Identities=21% Similarity=0.259 Sum_probs=37.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCCCCEEEE
Q ss_conf 96999987878688999999997607888530245202011003788608999865178977753058367508978999
Q gi|254780824|r 33 GDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDASIPVAHFDFYRLSSHQEVVELGFDEILNERICII 112 (162)
Q Consensus 33 g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~~~i~lI 112 (162)
|.+|.+.|+=||||||+++.+...... .. +.|-|++- ..-+.+..=||+ + +.+|++. ...++-.+.
T Consensus 2 G~LivvsgPSGaGK~Tli~~l~~~~~~-~~--~~s~s~tT-Rp~e~~g~dy~f----v-s~eeF~~-----~i~~g~F~~ 67 (184)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT-QL--LVAHRYIT-RPASAGSENHIA----L-SEQEFFT-----RAGQNLFAL 67 (184)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCC-CE--EEEEEECC-CCCCCCCCCCEE----C-CHHHHHH-----HHHCCCEEE
T ss_conf 709999899869999999999844899-88--99987237-899999968288----7-9999999-----997798299
Q ss_pred EC
Q ss_conf 98
Q gi|254780824|r 113 EW 114 (162)
Q Consensus 113 EW 114 (162)
+|
T Consensus 68 ~w 69 (184)
T PRK10078 68 SW 69 (184)
T ss_pred EE
T ss_conf 99
No 250
>PRK08770 DNA polymerase III subunits gamma and tau; Validated
Probab=95.10 E-value=0.12 Score=30.64 Aligned_cols=94 Identities=18% Similarity=0.268 Sum_probs=54.1
Q ss_pred HHHHHHHHHCCCC---CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHH---HHHHCC-CC-CCEEEEEEECCCC
Q ss_conf 9999999845899---69999878786889999999976078885302452020---110037-88-6089998651789
Q gi|254780824|r 21 CLGRHLASILRLG---DCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFT---LVQLYD-AS-IPVAHFDFYRLSS 92 (162)
Q Consensus 21 ~la~~la~~l~~g---~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~---l~~~Y~-~~-~~i~H~DlYRL~~ 92 (162)
...+.|.+.|..+ .-.+|.|.=|.||||.+|-|+++|.+... +++---. -|..-+ |+ ..++-+|.--=.+
T Consensus 23 ~~~~~l~~~~~~~~~~~a~lf~g~rg~gkt~~ar~~a~~lnc~~~--~~~~pc~~c~~c~~i~~~~~~d~~e~daas~~~ 100 (663)
T PRK08770 23 HVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNCETG--TSADPCGQCPACLDIDAGRYIDLLEIDAASNTG 100 (663)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf 999999999970997404762279988888999999998678999--999978778778988548988658864676588
Q ss_pred HHHHHCCCHHH--HCC-C---CEEEEECHHH
Q ss_conf 77753058367--508-9---7899998556
Q gi|254780824|r 93 HQEVVELGFDE--ILN-E---RICIIEWPEI 117 (162)
Q Consensus 93 ~~E~~~lg~~e--~~~-~---~i~lIEWpe~ 117 (162)
.++..+| ++. |-. . .|-+|.=-..
T Consensus 101 v~~~r~~-~~~~~~~p~~~~~kvy~idevhm 130 (663)
T PRK08770 101 VDDVREV-IENAQYMPSRGKFKVYLIDEVHM 130 (663)
T ss_pred HHHHHHH-HHHCCCCCCCCCEEEEEEECHHH
T ss_conf 8999999-98443588777436999700433
No 251
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=95.09 E-value=0.021 Score=35.16 Aligned_cols=33 Identities=36% Similarity=0.485 Sum_probs=27.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 99998787868899999999760788853024520
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPT 69 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPT 69 (162)
-|+|-|+-|||||=+++-+|+.|.+.=+ |.=-|
T Consensus 154 NILLiGPTGSGKTLLAqTLA~~L~VPfA--iADAT 186 (452)
T TIGR00382 154 NILLIGPTGSGKTLLAQTLARILNVPFA--IADAT 186 (452)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCEE--ECCHH
T ss_conf 6245468885268999999987388742--11111
No 252
>pfam01121 CoaE Dephospho-CoA kinase. This family catalyses the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form Coenzyme A EC:2.7.1.24. This enzyme uses ATP in its reaction.
Probab=95.08 E-value=0.025 Score=34.73 Aligned_cols=26 Identities=35% Similarity=0.377 Sum_probs=22.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 699998787868899999999760788
Q gi|254780824|r 34 DCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 34 ~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.||.+.|.+||||||+++.|.+ +|..
T Consensus 1 ~iIgiTG~IgsGKStv~~~l~~-~G~~ 26 (179)
T pfam01121 1 LIVGLTGGIGSGKSTVANLFAD-LGVP 26 (179)
T ss_pred CEEEEECCCCCCHHHHHHHHHH-CCCC
T ss_conf 9899857864789999999998-7991
No 253
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=95.07 E-value=0.028 Score=34.41 Aligned_cols=34 Identities=21% Similarity=0.387 Sum_probs=27.1
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 9999998458996999987878688999999997
Q gi|254780824|r 22 LGRHLASILRLGDCLTLSGDLGSGKSFLARSIIR 55 (162)
Q Consensus 22 la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~ 55 (162)
|=+.|..-+++|.++++.|+-|+|||+|+-.++.
T Consensus 8 LD~~l~GGi~~gs~~LI~G~pGsGKT~la~qfl~ 41 (231)
T pfam06745 8 LDEILKGGIPEGRVVLITGGPGTGKTIFGLQFLY 41 (231)
T ss_pred HHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 8863169982996999985897259999999999
No 254
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.06 E-value=0.025 Score=34.72 Aligned_cols=31 Identities=35% Similarity=0.469 Sum_probs=26.6
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 4589969999878786889999999976078
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
.+++|.++.+-|+=|+||||+.|.++.-...
T Consensus 22 ~v~~Ge~~~iiGpSGsGKSTllr~i~Gl~~p 52 (232)
T cd03300 22 DIKEGEFFTLLGPSGCGKTTLLRLIAGFETP 52 (232)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 8879989999999998399999999779999
No 255
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.06 E-value=0.024 Score=34.84 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=28.3
Q ss_pred HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 9984589969999878786889999999976078
Q gi|254780824|r 26 LASILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 26 la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
+.=.+.+|.++++-|.=|||||||+|.+..-+-.
T Consensus 29 isl~i~~Ge~vaivG~nGsGKSTLlk~l~Gll~p 62 (273)
T PRK13632 29 VSFTINEGEYVAILGHNGSGKSTISKILTGLLKP 62 (273)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 2889849989999999998699999999738778
No 256
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.05 E-value=0.022 Score=35.13 Aligned_cols=33 Identities=30% Similarity=0.422 Sum_probs=27.8
Q ss_pred HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 998458996999987878688999999997607
Q gi|254780824|r 26 LASILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 26 la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
+.=.+.+|.++.+-|+=||||||++|.++.-+.
T Consensus 26 isl~i~~GE~v~iiG~nGsGKSTLl~~l~GLl~ 58 (287)
T PRK13637 26 VNIEIEDGEFVALIGHTGSGKSTLIQHLNGLLK 58 (287)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 076987998999999999399999999973998
No 257
>pfam08477 Miro Miro-like protein. Mitochondrial Rho proteins (Miro-1 and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis.
Probab=95.05 E-value=0.083 Score=31.60 Aligned_cols=61 Identities=16% Similarity=0.176 Sum_probs=33.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHH---HHHCCCCCCEEEEEEECCCCHHHHHCC
Q ss_conf 9998787868899999999760788853024520201---100378860899986517897775305
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTL---VQLYDASIPVAHFDFYRLSSHQEVVEL 99 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l---~~~Y~~~~~i~H~DlYRL~~~~E~~~l 99 (162)
|.+-|+=|+|||+|++-++..--... +.+||... ...+..+..-+.+.++=..+.+++..+
T Consensus 2 ivvvG~~~vGKTSLi~r~~~~~f~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~ 65 (118)
T pfam08477 2 VVVIGDKGSGKSSLLSQLVGGEFPPE---IPEEIQGDTLAVDTLEVDGDTELLHIWDFGGREELKFE 65 (118)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC---CCCCCCCCEEEEEEEEECCCEEEEEEEECCCCHHHHHH
T ss_conf 99999899789999999983988876---66787777688899999992899999989996777666
No 258
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=95.05 E-value=0.026 Score=34.67 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=22.2
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 58996999987878688999999997607
Q gi|254780824|r 30 LRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 30 l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
+++|.++.|.|.-|||||||.|.++.-..
T Consensus 271 v~~GEivgl~G~nGsGKsTL~~~l~Gl~~ 299 (491)
T PRK10982 271 LHKGEILGIAGLVGAKRTDIVETLFGIRE 299 (491)
T ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 96896899778999978899999819867
No 259
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.18 Score=29.58 Aligned_cols=46 Identities=24% Similarity=0.299 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHHHCCCC--CEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9899999999999845899--699998787868899999999760788
Q gi|254780824|r 15 NEKNTICLGRHLASILRLG--DCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 15 ~~~~t~~la~~la~~l~~g--~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
=+++..+++..|++.+..+ .-+++.|.-|+|||+-+|.+++.+--.
T Consensus 22 Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~ 69 (366)
T COG1474 22 REEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEES 69 (366)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 488999999999998558998607998899987328999999999733
No 260
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.04 E-value=0.024 Score=34.83 Aligned_cols=31 Identities=32% Similarity=0.389 Sum_probs=26.4
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 4589969999878786889999999976078
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
.+++|.++.+-|+=||||||+.|.++.-+..
T Consensus 26 ~i~~Ge~~~iiGpsGsGKSTLl~~i~Gl~~p 56 (220)
T cd03293 26 SVEEGEFVALVGPSGCGKSTLLRIIAGLERP 56 (220)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9879989999999995799999999759998
No 261
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=95.03 E-value=0.069 Score=32.10 Aligned_cols=85 Identities=18% Similarity=0.213 Sum_probs=53.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHC---CCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCEE
Q ss_conf 99987878688999999997607888530245202011003---788608999865178977753058367508--9789
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLY---DASIPVAHFDFYRLSSHQEVVELGFDEILN--ERIC 110 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y---~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i~ 110 (162)
|.|-||-|+|||+|++-++.+--. + -..||...-... .-+...+++.++=..+.+.+..+- ..|+. ++++
T Consensus 3 ivllGd~~VGKTsli~r~~~~~f~-~---~~~~Tig~~~~~~~~~~~~~~~~l~iwDtaG~e~f~~~~-~~y~~~a~~~i 77 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMDGYE-P---QQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMH-ASYYHKAHACI 77 (161)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC-C---CCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCHHH-HHHHCCCCEEE
T ss_conf 999998996789999999809779-9---726654157999999999999999999799984343246-99735687679
Q ss_pred EE-------------ECHHHHHCCCCCC
Q ss_conf 99-------------9855632049954
Q gi|254780824|r 111 II-------------EWPEIGRSLLPKK 125 (162)
Q Consensus 111 lI-------------EWpe~~~~~lp~~ 125 (162)
+| +|-+.+....|..
T Consensus 78 lvfDit~~~Sf~~~~~w~~~i~~~~~~~ 105 (161)
T cd04124 78 LVFDVTRKITYKNLSKWYEELREYRPEI 105 (161)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9996897788999999999999868699
No 262
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.03 E-value=0.026 Score=34.69 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=27.0
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 4589969999878786889999999976078
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
.+.+|.++.+-|+=||||||+.|.+..-+-.
T Consensus 23 ~i~~Ge~~~iiGpsGsGKSTLl~~i~gl~~p 53 (241)
T cd03256 23 SINPGEFVALIGPSGAGKSTLLRCLNGLVEP 53 (241)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9999989999999983399999999749999
No 263
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.02 E-value=0.025 Score=34.75 Aligned_cols=32 Identities=31% Similarity=0.332 Sum_probs=27.0
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 84589969999878786889999999976078
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
=.+++|.++.+-|+=|+||||+.|.++.-...
T Consensus 23 ~~v~~Ge~~~iiGpSGsGKSTll~~i~Gl~~p 54 (239)
T cd03296 23 LDIPSGELVALLGPSGSGKTTLLRLIAGLERP 54 (239)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 69889989999999997799999999769999
No 264
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=95.01 E-value=0.03 Score=34.28 Aligned_cols=29 Identities=41% Similarity=0.699 Sum_probs=17.1
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 45899699998787868899999999760
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFL 57 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~l 57 (162)
.+.+|.+++|-|+=||||||+++.+..-+
T Consensus 38 ~v~~GE~vaLvGeSGSGKSTl~~~l~gll 66 (623)
T PRK10261 38 SLQRGETLAIVGESGSGKSVTALALMRLL 66 (623)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 98899899999899978999999997798
No 265
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.01 E-value=0.029 Score=34.40 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=28.2
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 458996999987878688999999997607888
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
.+++|.++.|-|+=||||||+.|-++.-+-.+.
T Consensus 22 ~v~~Gei~gllGpNGAGKSTll~~i~Gl~~p~~ 54 (220)
T cd03265 22 RVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTS 54 (220)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 988983999999998719999999976978896
No 266
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=95.00 E-value=0.026 Score=34.60 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=20.5
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 45899699998787868899999999760
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFL 57 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~l 57 (162)
.+.+|.++.+.|.-|||||||.|.++..+
T Consensus 284 ~v~~GEi~gi~G~nGsGKsTLl~~L~Gl~ 312 (513)
T PRK13549 284 SLRRGEILGIAGLVGAGRTELVQCLFGAY 312 (513)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 88688489974798865899999983898
No 267
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.00 E-value=0.026 Score=34.61 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=26.7
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 8458996999987878688999999997607
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
=.+++|.++++-|+=||||||++|.+..-+-
T Consensus 23 l~I~~Ge~vaiiG~nGsGKSTLl~~l~Gll~ 53 (275)
T PRK13639 23 FKAEEGEMIAILGPNGAGKSTLFLHFNGILK 53 (275)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 8998998999999999649999999973989
No 268
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.00 E-value=0.026 Score=34.67 Aligned_cols=32 Identities=34% Similarity=0.505 Sum_probs=27.2
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 84589969999878786889999999976078
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
=.+..|.++.+-|+=||||||+.|.++.-+..
T Consensus 20 ~~v~~Ge~~~iiGpSGsGKSTLlr~i~Gl~~p 51 (235)
T cd03299 20 LEVERGDYFVILGPTGSGKSVLLETIAGFIKP 51 (235)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 79889989999999963599999999749999
No 269
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.99 E-value=0.035 Score=33.88 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=31.1
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 999999845899699998787868899999999760788
Q gi|254780824|r 22 LGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 22 la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
|-..+..-++.|.++++.|+-|+|||+|+--|+....-.
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ 50 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGARE 50 (260)
T ss_pred HHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 888836898899789999389986899999999977626
No 270
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.98 E-value=0.023 Score=34.92 Aligned_cols=30 Identities=30% Similarity=0.445 Sum_probs=26.1
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 458996999987878688999999997607
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
.+.+|.++.+-|+=|||||||+|.+..-+-
T Consensus 16 ~i~~Ge~vaiiG~sGsGKSTLl~~l~GLl~ 45 (276)
T PRK13634 16 SIPSGSYVAIIGHTGSGKSTLLQHLNGLLK 45 (276)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 998998999999999699999999974999
No 271
>KOG0989 consensus
Probab=94.97 E-value=0.11 Score=30.92 Aligned_cols=56 Identities=20% Similarity=0.150 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC
Q ss_conf 999999999984589969999878786889999999976078885302452020110037
Q gi|254780824|r 18 NTICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD 77 (162)
Q Consensus 18 ~t~~la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~ 77 (162)
..+.|-+.+++ ...-..+|+|+=|+|||..++.++++|...+. -++-.-.+...|+
T Consensus 44 vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~--~~~rvl~lnaSde 99 (346)
T KOG0989 44 VVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQL--FPCRVLELNASDE 99 (346)
T ss_pred HHHHHHHHHHH--CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC--CCCCHHHHCCCCC
T ss_conf 99999999860--68860786689998676899999998557423--5554243136600
No 272
>pfam00931 NB-ARC NB-ARC domain.
Probab=94.96 E-value=0.059 Score=32.47 Aligned_cols=61 Identities=25% Similarity=0.146 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC----CCCC-CCCHHHHHHHC
Q ss_conf 8999999999998458996999987878688999999997607888----5302-45202011003
Q gi|254780824|r 16 EKNTICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDD----ALEV-LSPTFTLVQLY 76 (162)
Q Consensus 16 ~~~t~~la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~----~~~V-~SPTF~l~~~Y 76 (162)
++++.++-..|...=..-.||...|-=|.||||++|.+.+..-+.. ...| .|++|++....
T Consensus 2 ~~~~~~i~~~L~~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~i~~~F~~~~wv~vs~~~~~~~i~ 67 (285)
T pfam00931 2 EDMIEALIEKLLEMSENLGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKTYTEFRLQ 67 (285)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCHHHHHCCCEEEEEEECCCCCHHHHH
T ss_conf 689999999986489895399988999563999999997165565059838999979766689999
No 273
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=94.95 E-value=0.029 Score=34.39 Aligned_cols=107 Identities=19% Similarity=0.215 Sum_probs=54.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCC---------HHHH-HHHCC-CCCCEEEEEEECCCCHHHHHCCCHH
Q ss_conf 69999878786889999999976078885302452---------0201-10037-8860899986517897775305836
Q gi|254780824|r 34 DCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSP---------TFTL-VQLYD-ASIPVAHFDFYRLSSHQEVVELGFD 102 (162)
Q Consensus 34 ~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SP---------TF~l-~~~Y~-~~~~i~H~DlYRL~~~~E~~~lg~~ 102 (162)
.+|...|+=|+||||-+|-+++.||.+. |++= =-+| -+.|. .++.|- .+++- -..
T Consensus 1 M~I~ISGpPGSGktTvA~~lA~~Lsl~~---iSaG~iRelA~~~Gldl~E~~~aee~~eID----------k~iD~-~~~ 66 (173)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKL---ISAGDIRELAEKMGLDLAESKYAEENPEID----------KKIDR-RIR 66 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCE---ECCCHHHHHHHHCCCCHHHHHHHCCCCCCC----------HHHHH-HHH
T ss_conf 9788735896864789999998639831---202007889864298877734430586311----------67537-885
Q ss_pred HHC-CCCEEEEECHHHHHCCCCC-----CEEEEEEEECCCEEEEEE--EECCHHHHHHHHHH
Q ss_conf 750-8978999985563204995-----409999987398769999--95860899999999
Q gi|254780824|r 103 EIL-NERICIIEWPEIGRSLLPK-----KYIDIHLSQGKTGRKATI--SAERWIISHINQMN 156 (162)
Q Consensus 103 e~~-~~~i~lIEWpe~~~~~lp~-----~~i~I~i~~~~~~R~i~i--~~~~~~~~~l~~~~ 156 (162)
|+- .++=++|| -++...+-. .++.|-+.-.-+-|--+| --+......++++.
T Consensus 67 E~A~~~~nvvlE--srlagW~~~~nG~yaD~~iyL~A~levRA~RIA~Re~k~~~~A~~~~~ 126 (173)
T TIGR02173 67 EIAEKEKNVVLE--SRLAGWILKKNGEYADVKIYLKAPLEVRARRIAKRENKDLTVALKEII 126 (173)
T ss_pred HHHCCCCCEEEE--EHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 543048966885--205433115788967567886088333243321136889899999999
No 274
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=94.95 E-value=0.028 Score=34.44 Aligned_cols=31 Identities=32% Similarity=0.528 Sum_probs=26.4
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 8458996999987878688999999997607
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
=.+.+|.++.+-|+=||||||++|.+..-+-
T Consensus 32 l~i~~GE~v~iiG~nGsGKSTL~r~l~gl~~ 62 (281)
T PRK13633 32 LEVKKGEFLVILGHNGSGKSTIAKHMNALLL 62 (281)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 6887998999999999849999999975887
No 275
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.94 E-value=0.026 Score=34.64 Aligned_cols=31 Identities=29% Similarity=0.345 Sum_probs=25.9
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+++| ++.|-|+=||||||+.|.++.-+-.+
T Consensus 22 ~i~~G-i~gllGpNGAGKSTll~~i~Gl~~p~ 52 (211)
T cd03264 22 TLGPG-MYGLLGPNGAGKTTLMRILATLTPPS 52 (211)
T ss_pred EECCC-EEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 88897-59999999823999999997596689
No 276
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=94.93 E-value=0.027 Score=34.50 Aligned_cols=30 Identities=23% Similarity=0.347 Sum_probs=20.6
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 458996999987878688999999997607
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
.+.+|.++.|-|.-|||||||.|.+..-..
T Consensus 285 ~v~~GEi~gl~G~nGsGKsTL~~~l~Gl~~ 314 (510)
T PRK09700 285 SVCRGEILGFAGLVGSGRTELMNCLFGVDK 314 (510)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 874881899976888628899999819888
No 277
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=94.92 E-value=0.11 Score=30.83 Aligned_cols=72 Identities=19% Similarity=0.210 Sum_probs=46.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHH-----HHHHCCC---CCCEEEEEEECCCCHHHHHCCCHHHHCC-
Q ss_conf 999878786889999999976078885302452020-----1100378---8608999865178977753058367508-
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFT-----LVQLYDA---SIPVAHFDFYRLSSHQEVVELGFDEILN- 106 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~-----l~~~Y~~---~~~i~H~DlYRL~~~~E~~~lg~~e~~~- 106 (162)
|.+-||-|+|||+|++-++.+--... .+||-. -.+.|.. ....+++.+|=..+.+.+..+ ...|+.
T Consensus 3 IlllGDsgVGKTSL~~~~~~~~f~~~----~~~TiG~~v~~k~~~~~~~~~~~k~~~l~lWDtaGqery~sl-~~~yYr~ 77 (202)
T cd04102 3 VLVVGDSGVGKSSLVHLICKNQVLGR----PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKST-RAVFYNQ 77 (202)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC----CCCCEEEEEEEEEEEECCCCCCCCEEEEEEEECCCCHHHHHH-HHHHHCC
T ss_conf 99999999899999999983988888----888503678999999337876783899999989987757767-8997588
Q ss_pred -CCEEEE
Q ss_conf -978999
Q gi|254780824|r 107 -ERICII 112 (162)
Q Consensus 107 -~~i~lI 112 (162)
+++++|
T Consensus 78 a~gvILV 84 (202)
T cd04102 78 VNGIILV 84 (202)
T ss_pred CCEEEEE
T ss_conf 9899999
No 278
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=94.92 E-value=0.076 Score=31.81 Aligned_cols=58 Identities=19% Similarity=0.177 Sum_probs=39.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC----CCCCEEEEEEECCCCHHHHHCC
Q ss_conf 999878786889999999976078885302452020110037----8860899986517897775305
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD----ASIPVAHFDFYRLSSHQEVVEL 99 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~----~~~~i~H~DlYRL~~~~E~~~l 99 (162)
|.|-||-|+|||+|++-++.+--..+ -.|| +...|. .+..-+++.+|=..+.+++..+
T Consensus 3 vvlvGd~~VGKTsli~r~~~~~F~~~----y~pT--~~~~~~~~i~~~~~~v~l~iwDtaG~e~~~~l 64 (173)
T cd04130 3 CVLVGDGAVGKTSLIVSYTTNGYPTE----YVPT--AFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKL 64 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCC--EEEEEEEEEEECCEEEEEEEEECCCCCCCCHH
T ss_conf 99999899788999999961999998----5783--58999999999999999999989987344345
No 279
>PRK04328 hypothetical protein; Provisional
Probab=94.92 E-value=0.035 Score=33.85 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=29.2
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 999999845899699998787868899999999760
Q gi|254780824|r 22 LGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFL 57 (162)
Q Consensus 22 la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~l 57 (162)
|=+.|..-+++|.++++.|+-|+|||+|+--|+..-
T Consensus 13 LD~lL~GGlp~gs~~Lv~G~pGtGKT~la~qFl~~g 48 (250)
T PRK04328 13 MDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNG 48 (250)
T ss_pred HHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 787515998799699998289999899999999999
No 280
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.92 E-value=0.025 Score=34.72 Aligned_cols=92 Identities=21% Similarity=0.215 Sum_probs=54.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCC--CCCCCCHHHHHHHCCCC-CCEEEEEEECCCCHHHHHCCCHHHHCCCCEEE
Q ss_conf 9999878786889999999976078885--30245202011003788-60899986517897775305836750897899
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHDDA--LEVLSPTFTLVQLYDAS-IPVAHFDFYRLSSHQEVVELGFDEILNERICI 111 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~~~--~~V~SPTF~l~~~Y~~~-~~i~H~DlYRL~~~~E~~~lg~~e~~~~~i~l 111 (162)
||...|+=|+||||.+|.+++.||+.-. .++.||.++..-..-.. +.| | ..+..+ ..++-.++=++
T Consensus 1 iIaIdGpagsGKsT~ak~lA~~l~~~~ldtG~ir~~ev~~~~s~ia~~~~V------R----~~l~~~-Qr~~~~~~~~V 69 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGKLASEVAAIPEV------R----KALDER-QRELAKKPGIV 69 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHCCCHHH------H----HHHHHH-HHHHHHCCCEE
T ss_conf 988868997898999999999909907766542548998999998197889------9----999999-99997669968
Q ss_pred EECHHHHHCCCCCCEEEEEEEECCCE
Q ss_conf 99855632049954099999873987
Q gi|254780824|r 112 IEWPEIGRSLLPKKYIDIHLSQGKTG 137 (162)
Q Consensus 112 IEWpe~~~~~lp~~~i~I~i~~~~~~ 137 (162)
+|=-+...-.+|+..++|.+...-+.
T Consensus 70 ~eGRDigtvV~P~A~lKifL~As~e~ 95 (147)
T cd02020 70 LEGRDIGTVVFPDADLKIFLTASPEV 95 (147)
T ss_pred EECCCCCCEECCCCCEEEEEECCHHH
T ss_conf 97131010244674767777589899
No 281
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=94.92 E-value=0.13 Score=30.39 Aligned_cols=131 Identities=15% Similarity=0.181 Sum_probs=73.3
Q ss_pred HHHHHHHHHCCCC---CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHC-------CCC-CCEEEEEEEC
Q ss_conf 9999999845899---6999987878688999999997607888530245202011003-------788-6089998651
Q gi|254780824|r 21 CLGRHLASILRLG---DCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLY-------DAS-IPVAHFDFYR 89 (162)
Q Consensus 21 ~la~~la~~l~~g---~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y-------~~~-~~i~H~DlYR 89 (162)
...+.|.+.+..| ...+|.|+=|+|||+.+|.|++++.+.. .|+-.-|++- .+. ..+..+|.--
T Consensus 23 ~v~~~L~nai~~~ri~HAyLF~GprGtGKts~Ari~AkaLnC~~-----~~~~~pC~~C~~C~~i~~g~~~DviEiDaas 97 (563)
T PRK06674 23 HVTKTLQNALLQEKVSHAYLFSGPRGTGKTSIAKVFAKAVNCEH-----APVAEPCNECPSCLGITNGSISDVLEIDAAS 97 (563)
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHHCCCCCCEEEECCCC
T ss_conf 99999999998499650343128998689999999999857999-----9998877668789998558998779852555
Q ss_pred CCCHHHHHCCCHHHHC--C-----CCEEEEECHHHHHC--------C---CCCCEEEEEEEECCC-------EEEEEEE-
Q ss_conf 7897775305836750--8-----97899998556320--------4---995409999987398-------7699999-
Q gi|254780824|r 90 LSSHQEVVELGFDEIL--N-----ERICIIEWPEIGRS--------L---LPKKYIDIHLSQGKT-------GRKATIS- 143 (162)
Q Consensus 90 L~~~~E~~~lg~~e~~--~-----~~i~lIEWpe~~~~--------~---lp~~~i~I~i~~~~~-------~R~i~i~- 143 (162)
-.+.+++.++ .+.. . -.|++|+=.+++.. . -|...+.|-+....+ +|--.+.
T Consensus 98 n~gVd~IR~i--~~~v~~~P~~~~yKV~IIDeah~Lt~~A~NALLKtLEEPP~~viFILaTtep~ki~~TI~SRCQrf~F 175 (563)
T PRK06674 98 NNGVDEIRDI--RDKVKFAPSAVEYKVYIIDEVHMLSIGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFDF 175 (563)
T ss_pred CCCHHHHHHH--HHHHCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCHHHHHHHEEEEC
T ss_conf 5787999999--99826488678737999854563799999999998638875649999659947584788733103127
Q ss_pred ---ECCHHHHHHHHHHHH
Q ss_conf ---586089999999998
Q gi|254780824|r 144 ---AERWIISHINQMNRS 158 (162)
Q Consensus 144 ---~~~~~~~~l~~~~~~ 158 (162)
....+.++++.+.++
T Consensus 176 ~ri~~~~i~~rL~~I~~~ 193 (563)
T PRK06674 176 RRISVNDIVERLSTVVTN 193 (563)
T ss_pred CCCCHHHHHHHHHHHHHH
T ss_conf 889999999999999998
No 282
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=94.91 E-value=0.078 Score=31.78 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=23.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 699998787868899999999760788
Q gi|254780824|r 34 DCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 34 ~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.-|.+.|+=|+|||||+..+.+..-..
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~ 32 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPE 32 (219)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 799999999998899999996476765
No 283
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.90 E-value=0.021 Score=35.21 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=22.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 99998787868899999999760788
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
+|.+.|..||||+|++|-+.+.|+..
T Consensus 1 ~I~I~G~~gsGKsT~a~~l~~~l~~~ 26 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQLGGR 26 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 97883688887258999999995895
No 284
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=94.90 E-value=0.059 Score=32.47 Aligned_cols=72 Identities=14% Similarity=0.223 Sum_probs=38.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCEEEE
Q ss_conf 99987878688999999997607888530245202011003788608999865178977753058367508--978999
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ERICII 112 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i~lI 112 (162)
|++-|.-||||||+++.+...-.... ...||... +...-...=+.+.++-+.+.+.+..+ +..|+. +++++|
T Consensus 2 Il~lGl~~sGKTtil~~l~~~~~~~~---~~~pT~G~-~~~~~~~~~~~~~iwD~~G~~~~r~l-w~~y~~~~~~iI~V 75 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPENAQSQ---IIVPTVGF-NVESFEKGNLSFTAFDMSGQGKYRGL-WEHYYKNIQGIIFV 75 (162)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC---CCCCCCCE-EEEEEEECCEEEEEEECCCCCCCCHH-HHHHHCCCCEEEEE
T ss_conf 99999999988999999972898756---41685075-78999839988999985887442055-89870567448999
No 285
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=94.89 E-value=0.028 Score=34.42 Aligned_cols=31 Identities=32% Similarity=0.384 Sum_probs=26.8
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 4589969999878786889999999976078
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
.+.+|.++.|-|+=||||||+.|.++.-...
T Consensus 24 ~i~~GE~~~llGpSGsGKSTLlr~iaGL~~p 54 (352)
T PRK10851 24 DIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ 54 (352)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9999989999999984699999999769999
No 286
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.87 E-value=0.029 Score=34.36 Aligned_cols=32 Identities=31% Similarity=0.403 Sum_probs=26.9
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 84589969999878786889999999976078
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
-.+.+|.++.+-|+=|+||||+.|.++.-+..
T Consensus 22 l~i~~Ge~~~ilGpSG~GKSTllr~i~gl~~p 53 (242)
T cd03295 22 LEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP 53 (242)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 68869989999999995699999999759999
No 287
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.85 E-value=0.032 Score=34.07 Aligned_cols=33 Identities=27% Similarity=0.263 Sum_probs=28.2
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 845899699998787868899999999760788
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
=.+.+|..++|.|.=||||+||.|-+....-..
T Consensus 23 ~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt 55 (223)
T COG2884 23 FHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT 55 (223)
T ss_pred EEECCCEEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 764686089986788887899999998413678
No 288
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.85 E-value=0.031 Score=34.16 Aligned_cols=32 Identities=41% Similarity=0.514 Sum_probs=27.1
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 84589969999878786889999999976078
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
=.+.+|.++.+-|+=||||||+.|.++.-...
T Consensus 21 l~i~~Ge~~~iiG~SGsGKSTll~~i~gL~~p 52 (235)
T cd03261 21 LDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP 52 (235)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 48879989999999997299999999759998
No 289
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.84 E-value=0.032 Score=34.06 Aligned_cols=31 Identities=42% Similarity=0.584 Sum_probs=27.2
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 4589969999878786889999999976078
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
.+++|.++.+-|+=||||||+.|.++.-+..
T Consensus 21 ~i~~Ge~~~i~G~nGaGKSTLl~~l~gl~~~ 51 (157)
T cd00267 21 TLKAGEIVALVGPNGSGKSTLLRAIAGLLKP 51 (157)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9879979999878899989999999588479
No 290
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=94.82 E-value=0.031 Score=34.16 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=23.3
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 458996999987878688999999997607
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
.+.+|.++.+.|.=|+|||||+|.++.-+.
T Consensus 275 ~v~~GEivgivG~nGsGKSTL~k~L~Gl~~ 304 (501)
T PRK11288 275 AVRRGEIVGFFGLVGAGRSELMKLLYGATR 304 (501)
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 870883999756888648799998438748
No 291
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=94.80 E-value=0.029 Score=34.37 Aligned_cols=89 Identities=24% Similarity=0.244 Sum_probs=61.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCCC-CEEE
Q ss_conf 969999878786889999999976078885302452020110037886089998651789777530583675089-7899
Q gi|254780824|r 33 GDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDASIPVAHFDFYRLSSHQEVVELGFDEILNE-RICI 111 (162)
Q Consensus 33 g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~~-~i~l 111 (162)
-|=++|.|+=|-||||++.=+|+.||++- +|||= + -|+-|.|+..+ -..+++ .|.|
T Consensus 30 LDH~LL~GPPGLGKTTLA~IiA~Emg~~l--~iTsG-----------P--------~L~kPgDlaai--Lt~L~~gDVLF 86 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGVNL--KITSG-----------P--------ALEKPGDLAAI--LTNLEEGDVLF 86 (305)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCC--EEEEC-----------C--------CCCCHHHHHHH--HHHCCCCCEEE
T ss_conf 34166317568746789999999838932--67406-----------7--------55475789999--97056896310
Q ss_pred EECHHHHH----C-CCC---CCEEEEEEEECCCEEEEEEEE
Q ss_conf 99855632----0-499---540999998739876999995
Q gi|254780824|r 112 IEWPEIGR----S-LLP---KKYIDIHLSQGKTGRKATISA 144 (162)
Q Consensus 112 IEWpe~~~----~-~lp---~~~i~I~i~~~~~~R~i~i~~ 144 (162)
|-==.|+. + ++| +..++|-|-.+.+.|.|++.-
T Consensus 87 IDEIHRL~p~~EE~LYpAMEDF~lDi~IG~Gp~Ar~v~ldL 127 (305)
T TIGR00635 87 IDEIHRLSPAIEELLYPAMEDFRLDIVIGKGPSARSVRLDL 127 (305)
T ss_pred CCHHHHCCHHHHHHCCCCCCCEEEEEEEECCCCCCEEEECC
T ss_conf 12565048334531053001217877871289852576068
No 292
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=94.79 E-value=0.031 Score=34.15 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=24.1
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 458996999987878688999999997
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIR 55 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~ 55 (162)
.+.+|.++.+-|+=||||||++|.+..
T Consensus 27 ~I~~Gei~giIG~SGaGKSTLlr~i~g 53 (343)
T PRK11153 27 HVPAGQIYGVIGASGAGKSTLIRCVNL 53 (343)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 998998999999999869999999965
No 293
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=94.79 E-value=0.081 Score=31.65 Aligned_cols=73 Identities=12% Similarity=0.206 Sum_probs=42.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHH---HHHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC-CCEEE
Q ss_conf 9998787868899999999760788853024520201---1003788608999865178977753058367508-97899
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTL---VQLYDASIPVAHFDFYRLSSHQEVVELGFDEILN-ERICI 111 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l---~~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~-~~i~l 111 (162)
|.+-||-|+|||++++-++.+--.. -..||-.. ......+...+++.+|=..+.+.+..+.-.-+-+ +++++
T Consensus 3 ivlvGd~~VGKTsli~r~~~~~f~~----~y~~Tig~d~~~k~i~~~~~~~~l~iwDtaG~e~~~~l~~~~~~~a~~~il 78 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYVNKKFSN----QYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVL 78 (172)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCC----CCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHHCCEEEE
T ss_conf 9999989978999999995298898----757755516999999999999999999699983110688998652757999
Q ss_pred E
Q ss_conf 9
Q gi|254780824|r 112 I 112 (162)
Q Consensus 112 I 112 (162)
+
T Consensus 79 v 79 (172)
T cd01862 79 V 79 (172)
T ss_pred E
T ss_conf 9
No 294
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.78 E-value=0.025 Score=34.79 Aligned_cols=85 Identities=12% Similarity=0.135 Sum_probs=47.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCC----CCCCCCCCHHHHHHHCCCC--CCEEEEEEECCCCHHHHHCCCHHHH
Q ss_conf 899699998787868899999999760788----8530245202011003788--6089998651789777530583675
Q gi|254780824|r 31 RLGDCLTLSGDLGSGKSFLARSIIRFLMHD----DALEVLSPTFTLVQLYDAS--IPVAHFDFYRLSSHQEVVELGFDEI 104 (162)
Q Consensus 31 ~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~----~~~~V~SPTF~l~~~Y~~~--~~i~H~DlYRL~~~~E~~~lg~~e~ 104 (162)
..|.|++|.|+-|+||||-+--++..+-.. ...=||-=||-+-=.=+-+ ..|..+-++-..+++|+... +.++
T Consensus 174 ~~ggV~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~IlgvPv~vv~~~~eL~~a-L~~l 252 (404)
T PRK06995 174 ERGGVFALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLA-LAEL 252 (404)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHH-HHHH
T ss_conf 147558986688876375899999999998389837999768754789999999998759559995999999999-9970
Q ss_pred CCCCEEEEECHH
Q ss_conf 089789999855
Q gi|254780824|r 105 LNERICIIEWPE 116 (162)
Q Consensus 105 ~~~~i~lIEWpe 116 (162)
-+..+++|-=+-
T Consensus 253 ~~~dlILIDTaG 264 (404)
T PRK06995 253 RNKHIVLIDTVG 264 (404)
T ss_pred CCCCEEEEECCC
T ss_conf 899999980999
No 295
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=94.78 E-value=0.095 Score=31.26 Aligned_cols=84 Identities=12% Similarity=0.176 Sum_probs=49.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH---HHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCEE
Q ss_conf 99987878688999999997607888530245202011---003788608999865178977753058367508--9789
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLV---QLYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ERIC 110 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~---~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i~ 110 (162)
|.+-|+-|+|||+|++-++.+--... ..||...- ..+.-+...+++.+|=..+.+.+..+ ...++. ++++
T Consensus 3 ivvvGd~~VGKTsli~r~~~~~f~~~----~~~Tig~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~l-~~~~~~~a~~~i 77 (188)
T cd04125 3 VVIIGDYGVGKSSLLKRFTEDEFSES----TKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSL-NNSYYRGAHGYL 77 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHH-HHHHHCCCCEEE
T ss_conf 99999999789999999951968998----6886540357999999999999999989997104578-999863786799
Q ss_pred EE-------------ECHHHHHCCCCC
Q ss_conf 99-------------985563204995
Q gi|254780824|r 111 II-------------EWPEIGRSLLPK 124 (162)
Q Consensus 111 lI-------------EWpe~~~~~lp~ 124 (162)
+| +|=+.+...-|.
T Consensus 78 lvydit~~~Sf~~l~~w~~~i~~~~~~ 104 (188)
T cd04125 78 LVYDVTDQESFENLKFWINEINRYARE 104 (188)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 980389878999999999999987898
No 296
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.78 E-value=0.031 Score=34.15 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99699998787868899999999760
Q gi|254780824|r 32 LGDCLTLSGDLGSGKSFLARSIIRFL 57 (162)
Q Consensus 32 ~g~ii~L~GdLGaGKTtfvr~i~~~l 57 (162)
+|.++.+-|+=||||||+.|.++.-.
T Consensus 22 ~ge~~~iiGpSGsGKSTll~~i~GL~ 47 (214)
T cd03297 22 NEEVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99799999999735999999998499
No 297
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=94.77 E-value=0.032 Score=34.13 Aligned_cols=32 Identities=47% Similarity=0.549 Sum_probs=27.2
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 84589969999878786889999999976078
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
=.+.+|.++.|.|+=|+||||+.|.++.-+-.
T Consensus 312 f~l~~GE~lglVGeSGsGKSTlar~i~gL~~P 343 (539)
T COG1123 312 FDLREGETLGLVGESGSGKSTLARILAGLLPP 343 (539)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 57638878999889999989999999487788
No 298
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.77 E-value=0.032 Score=34.12 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=27.5
Q ss_pred HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 998458996999987878688999999997607
Q gi|254780824|r 26 LASILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 26 la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
+.=.+.+|.++++-|+=||||||++|.+..-+-
T Consensus 26 Vsl~i~~Ge~~aiiG~nGsGKSTLl~~l~Gl~~ 58 (280)
T PRK13649 26 VNLDILDGSYTAFIGHTGSGKSTIMQLLNGLHV 58 (280)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 268987998999995999869999999966999
No 299
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.77 E-value=0.034 Score=33.91 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=27.4
Q ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 984589969999878786889999999976078
Q gi|254780824|r 27 ASILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 27 a~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
.=.+..|.++++-|+=||||||+++.+..-+-.
T Consensus 46 s~~i~~Ge~vaIIG~nGsGKSTL~~~l~Gll~p 78 (320)
T PRK13631 46 SYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS 78 (320)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 558859989999949998499999999758889
No 300
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=94.76 E-value=0.032 Score=34.12 Aligned_cols=32 Identities=28% Similarity=0.299 Sum_probs=26.7
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 84589969999878786889999999976078
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
=.+.+|.++.|-|+=||||||+.|.++.-...
T Consensus 25 l~i~~Ge~~~llGpsG~GKTTllr~iaGl~~p 56 (358)
T PRK11650 25 LDVADGEFIVLVGPSGCGKSTLLRMVAGLERI 56 (358)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 79889989999999863699999999769998
No 301
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.75 E-value=0.035 Score=33.88 Aligned_cols=30 Identities=37% Similarity=0.457 Sum_probs=25.8
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 845899699998787868899999999760
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFL 57 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~l 57 (162)
=.++.|.++.+-|+=|+||||+.|.++.-.
T Consensus 21 ~~i~~Ge~~~ivGpSG~GKSTllr~i~Gl~ 50 (178)
T cd03229 21 LNIEAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 698899899999999983999999998599
No 302
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.74 E-value=0.027 Score=34.50 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=22.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 99998787868899999999760788
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
||...|.-|||||||+|.+.+.|+..
T Consensus 1 IIGIaG~sgSGKST~a~~l~~~l~~~ 26 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRW 26 (220)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 98978899877999999999986002
No 303
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.73 E-value=0.033 Score=34.04 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=26.3
Q ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9845899699998787868899999999760
Q gi|254780824|r 27 ASILRLGDCLTLSGDLGSGKSFLARSIIRFL 57 (162)
Q Consensus 27 a~~l~~g~ii~L~GdLGaGKTtfvr~i~~~l 57 (162)
.-.+..|.++++-|+=||||||++|.+..-+
T Consensus 31 sl~i~~Ge~~aIiG~nGsGKSTL~~~l~Gll 61 (289)
T PRK13645 31 SLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 8898899899999999957999999996598
No 304
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.71 E-value=0.03 Score=34.30 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=26.8
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 58996999987878688999999997607888
Q gi|254780824|r 30 LRLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 30 l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
-+++.+|++.|==||||||.+--+++.|-..+
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~ 128 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKG 128 (451)
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 89985899981567974868999999999749
No 305
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=94.70 E-value=0.11 Score=30.77 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=44.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC----CCCCEEEEEEECCCCHHHHHCCCHHHHCC-CCE
Q ss_conf 9999878786889999999976078885302452020110037----88608999865178977753058367508-978
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD----ASIPVAHFDFYRLSSHQEVVELGFDEILN-ERI 109 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~----~~~~i~H~DlYRL~~~~E~~~lg~~e~~~-~~i 109 (162)
=|.|-||=|+|||++++-++.+--..+ ..||. ...|. -+..-++++++=..+.+++..+--..|.. +++
T Consensus 5 KivlvGd~~VGKTsli~r~~~~~F~~~----y~pti--~~~~~~~~~i~~~~v~l~iwDtaG~e~~~~~~~~~~~~a~~~ 78 (191)
T cd01875 5 KCVVVGDGAVGKTCLLICYTTNAFPKE----YIPTV--FDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVF 78 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCC----CCCCC--CEEEEEEEEECCEEEEEEEEECCCCCCHHHHHHHHHCCCCEE
T ss_conf 999999999899999999972999986----46621--000467899999999999985888700356778774478689
Q ss_pred EE
Q ss_conf 99
Q gi|254780824|r 110 CI 111 (162)
Q Consensus 110 ~l 111 (162)
++
T Consensus 79 il 80 (191)
T cd01875 79 II 80 (191)
T ss_pred EE
T ss_conf 99
No 306
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.70 E-value=0.043 Score=33.33 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=27.4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 5899699998787868899999999760788
Q gi|254780824|r 30 LRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 30 l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+.|.+|.|.|-=||||||+++.+.+.|...
T Consensus 1 ~~kg~viWltGlsgSGKTTia~~l~~~L~~~ 31 (175)
T PRK00889 1 MQRGVTVWFTGLSGAGKTTISHALAEKLRAR 31 (175)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 9988899988989999999999999999986
No 307
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.70 E-value=0.03 Score=34.26 Aligned_cols=32 Identities=34% Similarity=0.397 Sum_probs=26.7
Q ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 98458996999987878688999999997607
Q gi|254780824|r 27 ASILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 27 a~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
.=.+.+|.++++-|.=||||||++|.+..-+-
T Consensus 27 sl~I~~Ge~~~iiG~nGsGKSTLl~~l~Gll~ 58 (286)
T PRK13641 27 SFELEDGSFVALIGHTGSGKSTLMQHFNALLK 58 (286)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 67986999999999998399999999965989
No 308
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.70 E-value=0.067 Score=32.17 Aligned_cols=135 Identities=12% Similarity=0.151 Sum_probs=71.3
Q ss_pred HHHHHHHHCCCC---CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCH--HHHHHHCC-C-CCCEEEEEEECCCCHH
Q ss_conf 999999845899---699998787868899999999760788853024520--20110037-8-8608999865178977
Q gi|254780824|r 22 LGRHLASILRLG---DCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPT--FTLVQLYD-A-SIPVAHFDFYRLSSHQ 94 (162)
Q Consensus 22 la~~la~~l~~g---~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPT--F~l~~~Y~-~-~~~i~H~DlYRL~~~~ 94 (162)
..+.|.+.+..+ ...+|.|+=|+||||.+|-+++++.+.... -.-|- -..|.... + ...+.-+|.=-=.+.+
T Consensus 24 v~~~L~n~i~~~~i~hayLf~GprG~GKTs~Ari~akalnc~~~~-~~~pC~~C~~C~~i~~g~~~Dv~Eidaas~~gvd 102 (541)
T PRK05563 24 ITTTLKNQIINNRIAHAYLFCGTRGTGKTSTAKIFAKAVNCLNPQ-DGEPCNECEICKKINEGLLMDVIEIDAASNNGVD 102 (541)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCHH
T ss_conf 999999999849932045303879958999999999995799988-8985751488999856898873662444447889
Q ss_pred HHHCCCHHHH-CC-----CCEEEEECHHHHHC--------C---CCCCEEEEEEEECCC-------EEE--EEEE--ECC
Q ss_conf 7530583675-08-----97899998556320--------4---995409999987398-------769--9999--586
Q gi|254780824|r 95 EVVELGFDEI-LN-----ERICIIEWPEIGRS--------L---LPKKYIDIHLSQGKT-------GRK--ATIS--AER 146 (162)
Q Consensus 95 E~~~lg~~e~-~~-----~~i~lIEWpe~~~~--------~---lp~~~i~I~i~~~~~-------~R~--i~i~--~~~ 146 (162)
++.++ .+.. +. -.|.+|.=.+.+.. . -|...+.|-.+...+ +|- +.+. ...
T Consensus 103 ~iR~~-~~~~~~~p~~~~~Kv~IiDEvhmls~~a~nallKtlEePp~~~~Filatte~~ki~~tI~SRcq~f~f~~i~~~ 181 (541)
T PRK05563 103 DIREI-IENVKYPPQEGKYKVYIMDEVHMLSQGAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRFDFKRIKVK 181 (541)
T ss_pred HHHHH-HHHCEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHEEEEEEEECCHH
T ss_conf 99999-97610487678705999977233899999999999854877756999769844274556742135775438999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 089999999998
Q gi|254780824|r 147 WIISHINQMNRS 158 (162)
Q Consensus 147 ~~~~~l~~~~~~ 158 (162)
.+.++|+.+.++
T Consensus 182 ~i~~~L~~I~~~ 193 (541)
T PRK05563 182 DIFKRLRKIVEE 193 (541)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999998
No 309
>PRK01184 hypothetical protein; Provisional
Probab=94.68 E-value=0.036 Score=33.78 Aligned_cols=26 Identities=31% Similarity=0.324 Sum_probs=22.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 699998787868899999999760788
Q gi|254780824|r 34 DCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 34 ~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+|.|.|-.||||+|+++ +++.+|+.
T Consensus 2 ~iIGlTG~iGSGKstva~-i~~e~G~~ 27 (183)
T PRK01184 2 MIIIVTGMPGSGKGEFSK-IARELGIP 27 (183)
T ss_pred EEEEEECCCCCCHHHHHH-HHHHCCCE
T ss_conf 399996899887899999-99977993
No 310
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=94.68 E-value=0.04 Score=33.50 Aligned_cols=29 Identities=34% Similarity=0.408 Sum_probs=25.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 99699998787868899999999760788
Q gi|254780824|r 32 LGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 32 ~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.|.||.+.|==||||||+++.+.+.|-..
T Consensus 1 kG~viW~TGLsGsGKTTlA~~l~~~L~~~ 29 (157)
T pfam01583 1 RGCTVWFTGLSGSGKSTIANALERKLFAQ 29 (157)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 98899988989999999999999999975
No 311
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.67 E-value=0.039 Score=33.59 Aligned_cols=83 Identities=23% Similarity=0.262 Sum_probs=46.1
Q ss_pred HHHHCCCCC--EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHC-----------CCCCCEEEEE-EECCC
Q ss_conf 998458996--999987878688999999997607888530245202011003-----------7886089998-65178
Q gi|254780824|r 26 LASILRLGD--CLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLY-----------DASIPVAHFD-FYRLS 91 (162)
Q Consensus 26 la~~l~~g~--ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y-----------~~~~~i~H~D-lYRL~ 91 (162)
|.+.+..+. -+.|+|+=|+||||+++-+++.++..-. --|.|.+-+... .++.+|+-+| .-|++
T Consensus 28 L~~~i~~~~~~s~Il~GPPG~GKTTlA~iiA~~~~~~f~--~lnA~~~gv~dir~ii~~a~~~~~~~~tilfiDEIHRfn 105 (417)
T PRK13342 28 LRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAEFE--ALSAVTSGVKDLREVIEEAKQSRLGRRTILFIDEIHRFN 105 (417)
T ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE--EEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECHHHCC
T ss_conf 999997699975998896999899999999998689889--961410388999999999886314896599997820058
Q ss_pred CHHHHHCCCHHHHCCCC-EEEEE
Q ss_conf 97775305836750897-89999
Q gi|254780824|r 92 SHQEVVELGFDEILNER-ICIIE 113 (162)
Q Consensus 92 ~~~E~~~lg~~e~~~~~-i~lIE 113 (162)
...+ +. +-.+.+++ |++|=
T Consensus 106 K~QQ--D~-LLp~vE~g~iiLIg 125 (417)
T PRK13342 106 KAQQ--DA-LLPHVEDGTITLIG 125 (417)
T ss_pred HHHH--HH-HHHHHHCCCEEEEE
T ss_conf 8999--99-98751126569997
No 312
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.66 E-value=0.086 Score=31.49 Aligned_cols=41 Identities=24% Similarity=0.212 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 99999999998458996999987878688999999997607
Q gi|254780824|r 18 NTICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 18 ~t~~la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
+..+.|-.++..-..+.=+++.|+=|+||||++|++..-|.
T Consensus 14 e~~K~AL~laav~p~~ggvLi~G~~GtgKStlaR~l~~iLP 54 (334)
T PRK13407 14 EEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLP 54 (334)
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999977278986089978998659999999997289
No 313
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=94.65 E-value=0.035 Score=33.88 Aligned_cols=29 Identities=31% Similarity=0.546 Sum_probs=25.4
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 45899699998787868899999999760
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFL 57 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~l 57 (162)
.+.+|.+++|-|+=||||||++|.+..-+
T Consensus 27 ~i~~Ge~~~lvG~nGsGKSTL~~~l~Gl~ 55 (513)
T PRK13549 27 RVRAGEIVSLCGENGAGKSTLMKVLSGVY 55 (513)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 98899799998999972999999995678
No 314
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=94.65 E-value=0.036 Score=33.79 Aligned_cols=32 Identities=34% Similarity=0.436 Sum_probs=27.1
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 84589969999878786889999999976078
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
=.+.+|.++.|-|+=|+||||+.|.++.-...
T Consensus 38 l~I~~GE~~~llGpSGsGKSTLlr~iaGl~~p 69 (378)
T PRK09452 38 LTINNGEFLTLLGPSGCGKTTVLRLIAGFETP 69 (378)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 79999989999989997699999999769999
No 315
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.62 E-value=0.038 Score=33.62 Aligned_cols=32 Identities=34% Similarity=0.422 Sum_probs=21.5
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+.+|+.+.|.|.=|||||||.|-++..+...
T Consensus 25 ~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~ 56 (530)
T COG0488 25 TLNPGERIGLVGRNGAGKSTLLKILAGELEPD 56 (530)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 76899889998999898899999982997788
No 316
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=94.62 E-value=0.031 Score=34.21 Aligned_cols=34 Identities=32% Similarity=0.465 Sum_probs=28.7
Q ss_pred HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 9984589969999878786889999999976078
Q gi|254780824|r 26 LASILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 26 la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
+.=.+.+|.++++-|+=|+||||++|.++.-+..
T Consensus 22 Isl~v~~Ge~~aiiG~SGsGKStl~k~llgll~~ 55 (254)
T PRK10418 22 VSLTLQRGRVLALVGGSGSGKSLTCAAALGILPA 55 (254)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 0728989999999999987899999999579988
No 317
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=94.62 E-value=0.13 Score=30.41 Aligned_cols=88 Identities=10% Similarity=0.065 Sum_probs=53.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHH---HCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCEE
Q ss_conf 999878786889999999976078885302452020110---03788608999865178977753058367508--9789
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQ---LYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ERIC 110 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~---~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i~ 110 (162)
|.|-||-|+|||++++-++.+--... -..||..... .+.-+...+++.+|=..+.+.+..+-- .|+. ++++
T Consensus 3 ivlvGd~~VGKTsLi~r~~~~~f~~~---~y~~tig~~~~~k~i~v~~~~v~l~iwDtaG~e~~~~l~~-~y~~~a~~~i 78 (193)
T cd04118 3 VVMLGKESVGKTSLVERYVHHRFLVG---PYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSR-IYYRGAKAAI 78 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC---CCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHH-HHHCCCCEEE
T ss_conf 99999699879999999985979989---9787630588999999999999999991999731235579-8834774457
Q ss_pred EE-------------ECHHHHHCCCCCCEE
Q ss_conf 99-------------985563204995409
Q gi|254780824|r 111 II-------------EWPEIGRSLLPKKYI 127 (162)
Q Consensus 111 lI-------------EWpe~~~~~lp~~~i 127 (162)
++ .|-+.+...-|...+
T Consensus 79 lvydit~~~Sf~~i~~W~~~i~~~~~~~~i 108 (193)
T cd04118 79 VCYDLTDSSSFERAKFWVKELQNLEEHCKI 108 (193)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 883069879999899999999974899997
No 318
>KOG1970 consensus
Probab=94.61 E-value=0.1 Score=30.99 Aligned_cols=57 Identities=18% Similarity=-0.019 Sum_probs=45.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEEC
Q ss_conf 9969999878786889999999976078885302452020110037886089998651
Q gi|254780824|r 32 LGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDASIPVAHFDFYR 89 (162)
Q Consensus 32 ~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~~~~i~H~DlYR 89 (162)
++-|++|.|+=|+||||-++-+++.+|++-.+ =.-|+=....+|..+-+..|.+.|-
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskelg~~~~E-w~Npi~~~~~~~~h~~t~~~~~~~~ 165 (634)
T KOG1970 109 GSRILLLTGPSGCGKSTTVKVLSKELGYQLIE-WSNPINLKEPENLHNETSFLMFPYQ 165 (634)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHCCEEEE-ECCCCCCCCCCCCCCCCHHCCCCHH
T ss_conf 76079985798887131999999864802123-0477665665554554400133036
No 319
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.61 E-value=0.075 Score=31.86 Aligned_cols=35 Identities=29% Similarity=0.147 Sum_probs=29.4
Q ss_pred HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 99845899699998787868899999999760788
Q gi|254780824|r 26 LASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 26 la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
-+..=+.|.||.|.|-=||||||+++.+.+.|--.
T Consensus 17 ~~~~~~kg~viWlTGLSGSGKTTlA~~L~~~L~~~ 51 (198)
T PRK03846 17 EQLHGHKGVVLWFTGLSGSGKSTVAGALEEALHEL 51 (198)
T ss_pred HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 99868998699987999998899999999999975
No 320
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=94.61 E-value=0.028 Score=34.41 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=23.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9699998787868899999999760788
Q gi|254780824|r 33 GDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 33 g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
+.||+|.|+-|+||||-+--++..+...
T Consensus 1 P~vi~lvGptGvGKTTTiaKLAa~~~~~ 28 (196)
T pfam00448 1 PNVILLVGLQGSGKTTTIAKLAAYLKKQ 28 (196)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 9699998999998899999999999977
No 321
>pfam06431 Polyoma_lg_T_C Polyomavirus large T antigen C-terminus.
Probab=94.60 E-value=0.11 Score=30.85 Aligned_cols=107 Identities=16% Similarity=0.159 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCC--C-CCEEEEEE------
Q ss_conf 99999999999845899699998787868899999999760788853024520201100378--8-60899986------
Q gi|254780824|r 17 KNTICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDA--S-IPVAHFDF------ 87 (162)
Q Consensus 17 ~~t~~la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~--~-~~i~H~Dl------ 87 (162)
+....+-+.+....+..--+++.|++-+||||++-+++.-+|.... +|.-|-=-|--+--. + +.+.-=|.
T Consensus 139 ~~i~~~lk~~v~N~PKkRy~lFkGPvNsGKTTlAAAlldLcgGkaL-NIN~P~dkL~FELG~AIDQfmVvFEDVKGq~~~ 217 (417)
T pfam06431 139 SVIYDFLKCIVYNIPKKRYWLFKGPIDSGKTTLAAALLDLCGGKAL-NVNLPLERLNFELGVAIDQFMVVFEDVKGTGAE 217 (417)
T ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEE-ECCCCHHHCCHHHCCEEEEEEEEEEECCCCCCC
T ss_conf 9999999999618874115887678677748799999986368612-047985644535300211047887524787665
Q ss_pred -ECCCCHHHHHCCC-HHHHCCCCEEE-EECH--HHHHCCCCC
Q ss_conf -5178977753058-36750897899-9985--563204995
Q gi|254780824|r 88 -YRLSSHQEVVELG-FDEILNERICI-IEWP--EIGRSLLPK 124 (162)
Q Consensus 88 -YRL~~~~E~~~lg-~~e~~~~~i~l-IEWp--e~~~~~lp~ 124 (162)
.-|.....+.+|+ +.||++.++-+ .|=- .+.....|+
T Consensus 218 ~k~Lp~G~Gi~NLDNLRDyLDGsV~VNLEKKH~NKrsQIFPP 259 (417)
T pfam06431 218 SRDLPSGHGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPP 259 (417)
T ss_pred CCCCCCCCCCCCHHHHHHHHCCCEEECHHHHHCCCCCCCCCC
T ss_conf 568999988532155777515741103445303665314899
No 322
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.60 E-value=0.04 Score=33.54 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=27.0
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+.+|.++.+-|+=|+|||||.|.++.-...+
T Consensus 22 ~v~~Ge~~~i~GpSG~GKSTlLr~iaGl~~p~ 53 (213)
T cd03301 22 DIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT 53 (213)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 98699899999999880999999997699998
No 323
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=94.60 E-value=0.036 Score=33.82 Aligned_cols=92 Identities=20% Similarity=0.285 Sum_probs=54.8
Q ss_pred HHHHHHHHHCCCCCE---EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCC--CCCE-EEEEEECCC---
Q ss_conf 999999984589969---9998787868899999999760788853024520201100378--8608-999865178---
Q gi|254780824|r 21 CLGRHLASILRLGDC---LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDA--SIPV-AHFDFYRLS--- 91 (162)
Q Consensus 21 ~la~~la~~l~~g~i---i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~--~~~i-~H~DlYRL~--- 91 (162)
.+.+.|...+..+.+ -+|.|+-|.||||.+|-|+++|.+.. +||..-|++-.. ...- .|+|+--++
T Consensus 23 ~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~-----~~~~ePC~~C~~Ck~I~~g~~~DviEiDaAS 97 (515)
T COG2812 23 HVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN-----GPTAEPCGKCISCKEINEGSLIDVIEIDAAS 97 (515)
T ss_pred HHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCC-----CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 99999999998084233365137777671049999999956889-----8777722531666865148864101136444
Q ss_pred --CHHHHHCCCHHHHC-----C-CCEEEEECHHHH
Q ss_conf --97775305836750-----8-978999985563
Q gi|254780824|r 92 --SHQEVVELGFDEIL-----N-ERICIIEWPEIG 118 (162)
Q Consensus 92 --~~~E~~~lg~~e~~-----~-~~i~lIEWpe~~ 118 (162)
+.+++.++ .+... . ..|.+|.=-..+
T Consensus 98 n~gVddiR~i-~e~v~y~P~~~ryKVyiIDEvHML 131 (515)
T COG2812 98 NTGVDDIREI-IEKVNYAPSEGRYKVYIIDEVHML 131 (515)
T ss_pred CCCHHHHHHH-HHHHCCCCCCCCCEEEEEECHHHH
T ss_conf 5486799999-987246886666418998318764
No 324
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.60 E-value=0.039 Score=33.60 Aligned_cols=31 Identities=32% Similarity=0.410 Sum_probs=26.4
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 8458996999987878688999999997607
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
-.+.+|.++++-|+=|+||||+.|.+..-.-
T Consensus 21 l~i~~Ge~~~ivGpSGsGKSTLL~~i~gL~~ 51 (213)
T cd03262 21 LTVKKGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 5988998999999998449999999981999
No 325
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.59 E-value=0.032 Score=34.08 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=24.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 9999878786889999999976078885
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHDDA 62 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~~~ 62 (162)
.|.|.|-=|+|||||+|.+++.|.....
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~ 30 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIW 30 (261)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 6998269998801789999999997200
No 326
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.59 E-value=0.036 Score=33.81 Aligned_cols=31 Identities=39% Similarity=0.493 Sum_probs=26.0
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 4589969999878786889999999976078
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
.+.+|.++++-|+=|+||||+.|.++.-.-.
T Consensus 46 ~i~~GE~~~ivG~SGsGKSTLLr~i~GL~~p 76 (269)
T cd03294 46 DVREGEIFVIMGLSGSGKSTLLRCINRLIEP 76 (269)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 8889999999989984899999999759999
No 327
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=94.58 E-value=0.036 Score=33.81 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=26.3
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 458996999987878688999999997607
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
.+.+|.++.|-|+=|||||||+|.+..-+.
T Consensus 27 ~i~~GEi~~liG~nGaGKSTL~~~l~G~~~ 56 (510)
T PRK09700 27 TVYPGEIHALLGENGAGKSTLMKVLSGIHE 56 (510)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 998996999989999729999999837998
No 328
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=94.56 E-value=0.039 Score=33.61 Aligned_cols=77 Identities=23% Similarity=0.336 Sum_probs=52.9
Q ss_pred EEECCCHHHHHHHHHH---HHHHC---CCCCEEEEECCCCCCHHHHHHHHHHH-HCCCCCCCCCCCHHHHHHHCCCCCCE
Q ss_conf 9982998999999999---99845---89969999878786889999999976-07888530245202011003788608
Q gi|254780824|r 10 VIPIPNEKNTICLGRH---LASIL---RLGDCLTLSGDLGSGKSFLARSIIRF-LMHDDALEVLSPTFTLVQLYDASIPV 82 (162)
Q Consensus 10 ~i~l~~~~~t~~la~~---la~~l---~~g~ii~L~GdLGaGKTtfvr~i~~~-lg~~~~~~V~SPTF~l~~~Y~~~~~i 82 (162)
.|-+-+++=+.-||.. =++.- +++.+|++.|==||||||+|-=+|.. |-.+.. -++-+
T Consensus 73 ~iKIV~eEL~~~LG~~~~E~~~L~~~~~~P~vilmvGLQGsGKTTt~gKLA~~ll~kk~~---------------~kvLL 137 (439)
T TIGR00959 73 FIKIVHEELVAILGGKGRESAELKLAEKRPTVILMVGLQGSGKTTTAGKLALYLLKKKEG---------------KKVLL 137 (439)
T ss_pred EEHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCC---------------CCEEE
T ss_conf 202246899985166673256755567868389973137885788999999999998638---------------97034
Q ss_pred EEEEEECCCCHHHHHCCCH
Q ss_conf 9998651789777530583
Q gi|254780824|r 83 AHFDFYRLSSHQEVVELGF 101 (162)
Q Consensus 83 ~H~DlYRL~~~~E~~~lg~ 101 (162)
.=+|+||.--.+++.-||=
T Consensus 138 va~D~yRPAA~~QL~~Lg~ 156 (439)
T TIGR00959 138 VACDLYRPAAIEQLKVLGE 156 (439)
T ss_pred EEHHCCCHHHHHHHHHHHH
T ss_conf 0321034789999999767
No 329
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=94.55 E-value=0.033 Score=34.05 Aligned_cols=40 Identities=25% Similarity=0.437 Sum_probs=28.0
Q ss_pred HHHHHHHHCCC-CCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 99999984589-96999987878688999999997607888
Q gi|254780824|r 22 LGRHLASILRL-GDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 22 la~~la~~l~~-g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
|..+|-+.|.. ..=|+..|.=|||||||+++++..+.-.+
T Consensus 251 L~dkl~eRL~eraeGILIAG~PGaGKsTFaqAlAefy~~~G 291 (604)
T COG1855 251 LSDKLKERLEERAEGILIAGAPGAGKSTFAQALAEFYASQG 291 (604)
T ss_pred CCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 79899999886416469956999974689999999998669
No 330
>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=94.54 E-value=0.085 Score=31.54 Aligned_cols=41 Identities=17% Similarity=0.282 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 89999999999984589969999878786889999999976
Q gi|254780824|r 16 EKNTICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRF 56 (162)
Q Consensus 16 ~~~t~~la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~ 56 (162)
-..++++-+.+.+......-|++.|+-|+||+.++|.|-..
T Consensus 5 S~~m~~l~~~i~~~a~~~~pVLI~GE~GtGK~~lAr~IH~~ 45 (168)
T pfam00158 5 SPAMQEVLELAKRVAPTDATVLITGESGTGKELFARAIHQL 45 (168)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 99999999999999588998899899988889999999985
No 331
>PRK00023 cmk cytidylate kinase; Provisional
Probab=94.54 E-value=0.046 Score=33.16 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=27.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 996999987878688999999997607888
Q gi|254780824|r 32 LGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 32 ~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
..-||...|+-|+||+|.+|.+++.||+.-
T Consensus 3 ~~iIIaIDGpagSGKST~ak~lA~~L~~~y 32 (225)
T PRK00023 3 KAPVIAIDGPAGSGKGTVAKILAKKLGFHY 32 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 897899658986787899999999939887
No 332
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.53 E-value=0.053 Score=32.79 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=29.3
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+++|..+++.|+=||||||+++-+.+-+..+
T Consensus 351 ~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~ 382 (567)
T COG1132 351 SIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT 382 (567)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 75489878885588885789999998615888
No 333
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=94.53 E-value=0.041 Score=33.46 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=27.5
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+.+|.+++|-|+=||||||++|.+..-+..+
T Consensus 26 ~i~~Gei~~liG~nGaGKSTL~~~l~G~~~~~ 57 (501)
T PRK10762 26 NVYPGRVMALVGENGAGKSTLMKVLTGIYTRD 57 (501)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 99899699998999982999999995799898
No 334
>pfam00071 Ras Ras family. Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices.
Probab=94.52 E-value=0.1 Score=31.03 Aligned_cols=84 Identities=17% Similarity=0.224 Sum_probs=47.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHH---HHHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCEE
Q ss_conf 9998787868899999999760788853024520201---1003788608999865178977753058367508--9789
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTL---VQLYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ERIC 110 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l---~~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i~ 110 (162)
|++-|+=|+|||+|++.++.+--... -+||-.. ......+..-+.+.++-..+.+++..+ ...++. ++++
T Consensus 2 i~vvG~~~vGKTsli~r~~~~~f~~~----~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~e~~~~~-~~~~~~~ad~~i 76 (162)
T pfam00071 2 LVLVGDGGVGKSSLLIRFTQNKFPEE----YIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQERFRAL-RPLYYRGAQGFL 76 (162)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHH-HHHHHCCCCCCE
T ss_conf 89999799779999999961999987----4774135567899999999999999978987204678-899862576550
Q ss_pred EE-------------ECHHHHHCCCCC
Q ss_conf 99-------------985563204995
Q gi|254780824|r 111 II-------------EWPEIGRSLLPK 124 (162)
Q Consensus 111 lI-------------EWpe~~~~~lp~ 124 (162)
++ .|-+.+....+.
T Consensus 77 ivfd~~~~~S~~~i~~~~~~i~~~~~~ 103 (162)
T pfam00071 77 LVYDITSRDSFENVKKWLEEILRHADD 103 (162)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 423489889999999999999985798
No 335
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=94.52 E-value=0.1 Score=31.04 Aligned_cols=83 Identities=12% Similarity=0.252 Sum_probs=44.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHH---HHHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCEE
Q ss_conf 9998787868899999999760788853024520201---1003788608999865178977753058367508--9789
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTL---VQLYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ERIC 110 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l---~~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i~ 110 (162)
|++-|+-|+|||+|++.++.+--... ..||... ...+.-+..-+++.++=..+.+.+..+ ...++. ++++
T Consensus 3 i~vvG~~~vGKTsli~~~~~~~f~~~----~~~Tig~d~~~~~~~~~~~~~~l~iwDt~G~e~~~~l-~~~~~~~~d~~i 77 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGKFDEN----YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSI-TPSYYRGAHGAI 77 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHH-HHHHHHHCCEEE
T ss_conf 99999699689999999970999998----4886664799999999999999999978982657788-999975412756
Q ss_pred EE-------------ECHHHHHCCCC
Q ss_conf 99-------------98556320499
Q gi|254780824|r 111 II-------------EWPEIGRSLLP 123 (162)
Q Consensus 111 lI-------------EWpe~~~~~lp 123 (162)
++ +|-+.+....+
T Consensus 78 lv~d~~~~~Sf~~~~~~~~~i~~~~~ 103 (159)
T cd00154 78 LVYDITNRESFENLDKWLKELKEYAP 103 (159)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 72448988999999999999998689
No 336
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=94.51 E-value=0.1 Score=31.08 Aligned_cols=71 Identities=15% Similarity=0.225 Sum_probs=41.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCEEEE
Q ss_conf 99987878688999999997607888530245202011003788608999865178977753058367508--978999
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ERICII 112 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i~lI 112 (162)
|++-|-=||||||+...+...-... -..||... +...-...=+.+.+|=+.+.+.+..+ +..|+. ++|++|
T Consensus 2 IlilGLd~aGKTTil~~l~~~~~~~----~~~PT~Gf-~~~~i~~~~~~l~~wDlgGq~~~R~~-W~~Y~~~~~gIIfV 74 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLE----SVVPTTGF-NSVAIPTQDAIMELLEIGGSQNLRKY-WKRYLSGSQGLIFV 74 (164)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCC----CCCCCCCC-CEEEEEECCEEEEEEECCCHHHHHHH-HHHHHHCCCEEEEE
T ss_conf 9999679998999999981699876----53563277-46999989999999853752888656-99871177589999
No 337
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=94.51 E-value=0.12 Score=30.61 Aligned_cols=45 Identities=22% Similarity=0.188 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 999999999998458996999987878688999999997607888
Q gi|254780824|r 17 KNTICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 17 ~~t~~la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
.+...+-+.+.+.-....+|...|.=||||+||+-.++..+-..+
T Consensus 13 ~~~~~ll~~~~~~~g~a~~iGiTG~PGaGKStli~~l~~~~~~~g 57 (267)
T pfam03308 13 PEARELLRRLMPLTGRAHRVGITGVPGAGKSTLIEALGMELRRRG 57 (267)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 779999999874359955998768998879999999999999689
No 338
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=94.50 E-value=0.045 Score=33.23 Aligned_cols=26 Identities=35% Similarity=0.347 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 699998787868899999999760788
Q gi|254780824|r 34 DCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 34 ~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+|.+.|..||||||+++.|. .+|..
T Consensus 3 ~~IgiTG~igsGKStv~~~l~-~~G~~ 28 (199)
T PRK00081 3 LIIGLTGGIGSGKSTVANIFA-ELGVP 28 (199)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCC
T ss_conf 899957888777999999999-88993
No 339
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.50 E-value=0.045 Score=33.18 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=22.7
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 45899699998787868899999999
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSII 54 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~ 54 (162)
.+++|.++++.|+=|||||||++.++
T Consensus 17 ~i~~G~~~aIiG~sGsGKSTLl~~~L 42 (261)
T cd03271 17 DIPLGVLTCVTGVSGSGKSSLINDTL 42 (261)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 98899999998799986999999998
No 340
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=94.50 E-value=0.039 Score=33.61 Aligned_cols=32 Identities=31% Similarity=0.405 Sum_probs=26.8
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 84589969999878786889999999976078
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
=.+.+|.++.|-|+=||||||+.|.++.-+..
T Consensus 40 l~I~~GE~~~llGpsGsGKSTllr~i~Gl~~p 71 (377)
T PRK11607 40 LTIYKGEIFALLGASGCGKSTLLRMLAGFEQP 71 (377)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 79999989999999984899999999769999
No 341
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.48 E-value=0.22 Score=29.05 Aligned_cols=70 Identities=13% Similarity=0.172 Sum_probs=38.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCCCCEEEEE
Q ss_conf 69999878786889999999976078885302452020110037886089998651789777530583675089789999
Q gi|254780824|r 34 DCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDASIPVAHFDFYRLSSHQEVVELGFDEILNERICIIE 113 (162)
Q Consensus 34 ~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~~~i~lIE 113 (162)
.+|+|-|+-|+||||=+--++..+...... +..+.-.|-||+...+++.. +-+.++=.+.+|.
T Consensus 224 kvi~lVGPTGVGKTTTiAKLAA~~~l~~~k---------------kVaLIT~DTYRIgAvEQLkt--Ya~Il~iPv~vv~ 286 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGK---------------SVSLYTTDNYRIAAIEQLKR--YADTMGMPFYPVK 286 (432)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCC---------------EEEEEECCCCCHHHHHHHHH--HHHHHCCCEEEEE
T ss_conf 299998999988899999999999997499---------------27999526653779999999--9998599459951
Q ss_pred CHHHHHC
Q ss_conf 8556320
Q gi|254780824|r 114 WPEIGRS 120 (162)
Q Consensus 114 Wpe~~~~ 120 (162)
=|+.+..
T Consensus 287 ~~~el~~ 293 (432)
T PRK12724 287 DIKKFKE 293 (432)
T ss_pred CHHHHHH
T ss_conf 8999999
No 342
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=94.48 E-value=0.045 Score=33.19 Aligned_cols=27 Identities=33% Similarity=0.376 Sum_probs=23.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 999987878688999999997607888
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
-|+|.|-|||||||.-|-+++.||..-
T Consensus 2 ~I~LiG~mGaGKTtvGr~LA~~L~~~F 28 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRISEVLDLQF 28 (488)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 499989999987799999999839795
No 343
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=94.47 E-value=0.13 Score=30.41 Aligned_cols=60 Identities=15% Similarity=0.219 Sum_probs=35.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH---HHCCCCCCEEEEEEECCCCHHHHHCC
Q ss_conf 99987878688999999997607888530245202011---00378860899986517897775305
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLV---QLYDASIPVAHFDFYRLSSHQEVVEL 99 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~---~~Y~~~~~i~H~DlYRL~~~~E~~~l 99 (162)
|++-|+-|+|||+|++-++.+--... ..||...- ..+.-+..-+++.++=..+.+++..+
T Consensus 3 i~vvG~~~vGKTsli~r~~~~~f~~~----~~~Ti~~~~~~~~i~~~~~~~~l~iwDt~G~e~~~~l 65 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDGKFSEQ----YKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSI 65 (164)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHH
T ss_conf 99999899779999999941999998----6884566667799999999999999967994466477
No 344
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.46 E-value=0.043 Score=33.34 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=25.6
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 458996999987878688999999997607
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
.+.+|.++.+-|+=||||||+.+-+..-..
T Consensus 23 ~i~~Ge~v~i~GpSGsGKSTLl~~i~gl~~ 52 (214)
T cd03292 23 SISAGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 985998999997999539999999962989
No 345
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=94.44 E-value=0.11 Score=30.87 Aligned_cols=84 Identities=12% Similarity=0.089 Sum_probs=51.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHH---HCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCEE
Q ss_conf 999878786889999999976078885302452020110---03788608999865178977753058367508--9789
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQ---LYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ERIC 110 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~---~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i~ 110 (162)
|.|-||-|+|||+|++-++.+--... ..||...-- ....+..-++++++-..+.+.+..+. ..|+. ++++
T Consensus 9 ivllGd~~VGKTsl~~r~~~~~f~~~----y~~Tig~~~~~k~~~~~~~~v~l~iwDtaGqe~f~~l~-~~y~r~a~~~i 83 (189)
T cd04121 9 FLLVGDSDVGKGEILASLQDGSTESP----YGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIF-RSYSRGAQGII 83 (189)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC----CCCCCCEEEEEEEEEECCEEEEEEEECCCCCCCHHHHH-HHHHHHCCCEE
T ss_conf 99999899789999999974997898----68765379899999999999999998178862211678-98866337048
Q ss_pred EE-------------ECHHHHHCCCCC
Q ss_conf 99-------------985563204995
Q gi|254780824|r 111 II-------------EWPEIGRSLLPK 124 (162)
Q Consensus 111 lI-------------EWpe~~~~~lp~ 124 (162)
+| +|=+.+...-|.
T Consensus 84 lvyDvt~~~Sf~~l~~w~~~i~~~~~~ 110 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHAPG 110 (189)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 982279889999999999999997689
No 346
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.42 E-value=0.046 Score=33.17 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=24.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 999987878688999999997607888
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
-|.+-|.=|||||||++.+++.+++..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~h 28 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPH 28 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCE
T ss_conf 799989999988999999999769978
No 347
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=94.42 E-value=0.043 Score=33.33 Aligned_cols=32 Identities=28% Similarity=0.319 Sum_probs=27.0
Q ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 98458996999987878688999999997607
Q gi|254780824|r 27 ASILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 27 a~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
.=.+.+|.++.|-|+=|+||||+.|.++.-..
T Consensus 23 sl~i~~Ge~~~llGpsG~GKSTllr~i~Gl~~ 54 (369)
T PRK11000 23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED 54 (369)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 88987998999999997369999999977999
No 348
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=0.14 Score=30.28 Aligned_cols=45 Identities=24% Similarity=0.249 Sum_probs=36.4
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHC
Q ss_conf 458996999987878688999999997607888530245202011003
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLY 76 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y 76 (162)
.+++...++|.|+=|.|||.+++.++..++..-. .|..| .++..|
T Consensus 272 ~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi-~v~~~--~l~sk~ 316 (494)
T COG0464 272 GLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFI-SVKGS--ELLSKW 316 (494)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEE-EECCH--HHHHHH
T ss_conf 8988836999889997589999998754498248-84335--554077
No 349
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=94.41 E-value=0.18 Score=29.51 Aligned_cols=84 Identities=12% Similarity=0.188 Sum_probs=48.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHH-----HCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CC
Q ss_conf 999878786889999999976078885302452020110-----03788608999865178977753058367508--97
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQ-----LYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ER 108 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~-----~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~ 108 (162)
|.+-||-|+|||+|++-++.+--..+ .+||...-- .++.+...+++.++=..+.+++..+ ...++. ++
T Consensus 3 ivvlGd~~VGKTsLi~r~~~~~f~~~----y~~Tig~~~~~k~i~~~~~~~~v~l~iwDtaG~e~~~~l-~~~~~~~a~~ 77 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKGIFTKD----YKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAI-TKAYYRGAQA 77 (162)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCCC-HHHHHHHHCC
T ss_conf 99999999889999999984968987----688556257887899867997999999978997013415-2456123031
Q ss_pred EEEE-------------ECHHHHHCCCCC
Q ss_conf 8999-------------985563204995
Q gi|254780824|r 109 ICII-------------EWPEIGRSLLPK 124 (162)
Q Consensus 109 i~lI-------------EWpe~~~~~lp~ 124 (162)
++++ .|-+.+....+.
T Consensus 78 ~ilvydvt~~~Sf~~l~~w~~~~~~~~~~ 106 (162)
T cd04106 78 CILVFSTTDRESFEAIESWKEKVEAECGD 106 (162)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 26884069889999999999999976699
No 350
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=94.40 E-value=0.038 Score=33.68 Aligned_cols=35 Identities=34% Similarity=0.547 Sum_probs=28.8
Q ss_pred HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 99845899699998787868899999999760788
Q gi|254780824|r 26 LASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 26 la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
+.=.+.+|.++.|-|+-|+||||++|.++.-+...
T Consensus 343 vsf~i~~GE~l~lvG~sGsGKSTl~r~l~gl~~~~ 377 (623)
T PRK10261 343 VSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ 377 (623)
T ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 40035899589997678766899999985664667
No 351
>TIGR01192 chvA glucan exporter ATP-binding protein; InterPro: IPR005896 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. In general, this protein is in some ways implicated in osmo-regulation and is suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bacterial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmo-adaptaion are related. ; GO: 0005215 transporter activity, 0006810 transport.
Probab=94.40 E-value=0.038 Score=33.68 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=23.8
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 45899699998787868899999999760
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFL 57 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~l 57 (162)
..+.|..|..-|+-||||||++.-+=+-.
T Consensus 357 ~~KAG~TvAIVGPTGAGKTTLiNLLQRVy 385 (592)
T TIGR01192 357 EAKAGQTVAIVGPTGAGKTTLINLLQRVY 385 (592)
T ss_pred EEECCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 65247568987789971789988775310
No 352
>PRK13768 GTPase; Provisional
Probab=94.39 E-value=0.047 Score=33.06 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=22.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 699998787868899999999760788
Q gi|254780824|r 34 DCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 34 ~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
-.++..|+=|+||||||+++.+.+...
T Consensus 3 ~~~~ViGpaGSGKsT~~~~l~~~l~~~ 29 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLVGALSDWLEEQ 29 (253)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 189998999998899999999999976
No 353
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=94.39 E-value=0.37 Score=27.70 Aligned_cols=84 Identities=19% Similarity=0.309 Sum_probs=52.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHC----CCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCE
Q ss_conf 99987878688999999997607888530245202011003----788608999865178977753058367508--978
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLY----DASIPVAHFDFYRLSSHQEVVELGFDEILN--ERI 109 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y----~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i 109 (162)
|.|-||-|+|||++++-++.+--... -.||-.+ +.+ .-+..-+++++|=..+.+++..+ ..-|+. +++
T Consensus 3 ivlvGd~~VGKTsLi~rf~~~~F~~~----y~~Tig~-d~~~k~i~v~~~~v~l~iwDtaGqe~f~~~-~~~y~~~a~~~ 76 (182)
T cd04128 3 IGLLGDAQIGKTSLMVKYVEGEFDED----YIQTLGV-NFMEKTISIRGTEITFSIWDLGGQREFINM-LPLVCNDAVAI 76 (182)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC----CCCCCEE-EEEEEEEEECCEEEEEEEEECCCCHHHHHH-HHHHHCCCCEE
T ss_conf 99999999898999999953999999----8887338-989999999999999999867764878999-99986478789
Q ss_pred EEE-------------ECHHHHHCCCCCC
Q ss_conf 999-------------9855632049954
Q gi|254780824|r 110 CII-------------EWPEIGRSLLPKK 125 (162)
Q Consensus 110 ~lI-------------EWpe~~~~~lp~~ 125 (162)
+++ +|=+.+...-+..
T Consensus 77 ilvfDit~~~Sf~~~~~w~~~i~~~~~~~ 105 (182)
T cd04128 77 LFMFDLTRKSTLNSIKEWYRQARGFNKTA 105 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99997899899998999999999768999
No 354
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.39 E-value=0.13 Score=30.35 Aligned_cols=37 Identities=30% Similarity=0.284 Sum_probs=29.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCC-CHH
Q ss_conf 996999987878688999999997607888530245-202
Q gi|254780824|r 32 LGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLS-PTF 70 (162)
Q Consensus 32 ~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~S-PTF 70 (162)
+-|-++|.|+=|-||||+++-+++.+|..-. ++| |..
T Consensus 50 ~ldH~Ll~GPPGlGKTTLA~iiA~E~~~~~~--~tsGP~l 87 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEMGVNIR--ITSGPAL 87 (328)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCCE--ECCCCCC
T ss_conf 9880576588998899999999998688815--6245001
No 355
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.39 E-value=0.047 Score=33.08 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 6999987878688999999997607
Q gi|254780824|r 34 DCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 34 ~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
.||+|.|+=|+||||-+--++..+-
T Consensus 1 ~Vi~lvGptGvGKTTTiaKLA~~~~ 25 (173)
T cd03115 1 TVILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9999989999988999999999999
No 356
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=94.38 E-value=0.089 Score=31.42 Aligned_cols=70 Identities=13% Similarity=0.217 Sum_probs=39.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCEEEE
Q ss_conf 99987878688999999997607888530245202011003788608999865178977753058367508--978999
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ERICII 112 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i~lI 112 (162)
|++-|+-|+|||++++.+...-- . -+.||-.. +...-...=+.+.+|=+.+.+.+..+ ...|+. +++++|
T Consensus 2 i~ilG~~~vGKTsll~~l~~~~~-~----~~~pTig~-~~~~i~~~~~~l~iwDt~G~~~~~~~-~~~y~~~a~~~i~V 73 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGEV-V----TTIPTIGF-NVETVEYKNVSFTVWDVGGQDKIRPL-WKHYYENTNGIIFV 73 (158)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC-C----CCCCEECC-CEEEEEECCEEEEEEECCCCCCCCHH-HHHHHCCCCEEEEE
T ss_conf 99999999988999999953998-8----74456074-08999848899999988997221448-99872768776899
No 357
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL; InterPro: IPR012701 Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three-component ABC transporter, where IPR005769 from INTERPRO is the permease, IPR005770 from INTERPRO is the phosphonates binding protein, and IPR012693 from INTERPRO is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lyase complex. This protein (PhnL) and the adjacent-encoded PhnK (IPR012700 from INTERPRO) resemble transporter ATP-binding proteins but are suggested, based on mutagenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se ..
Probab=94.38 E-value=0.036 Score=33.76 Aligned_cols=33 Identities=36% Similarity=0.647 Sum_probs=27.9
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 458996999987878688999999997607888
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
.++.|.+++|.|.=||||.|+-|+|=...-.+.
T Consensus 30 ~V~aGEcv~L~G~SGaGKSTlLk~lYaNYlp~~ 62 (224)
T TIGR02324 30 TVNAGECVALSGPSGAGKSTLLKSLYANYLPDS 62 (224)
T ss_pred EEECCCEEEEECCCCCCHHHHHHHHHHCCCCCC
T ss_conf 873673588536888767899997663047468
No 358
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein; InterPro: IPR011918 This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins ..
Probab=94.37 E-value=0.05 Score=32.92 Aligned_cols=33 Identities=33% Similarity=0.528 Sum_probs=28.9
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 845899699998787868899999999760788
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
=.++||..|.|-|+=||||||+-+-+.+..-.+
T Consensus 361 L~v~PGEtvAlVGPSGAGKSTlf~LLLRFYDP~ 393 (576)
T TIGR02204 361 LTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ 393 (576)
T ss_pred CEECCCCEEEEECCCCCHHHHHHHHHHHCCCCC
T ss_conf 256277658876688762799999998604888
No 359
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=94.37 E-value=0.042 Score=33.41 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=27.3
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+.+|.+++|-|+=||||||++|.+..-+..+
T Consensus 20 ~i~~Gei~~liG~nGsGKSTL~~~l~Gl~~~~ 51 (491)
T PRK10982 20 KVRPHSIHALMGENGAGKSTLLKCLFGIYQKD 51 (491)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 99899699998999981999999995698899
No 360
>PRK08903 hypothetical protein; Validated
Probab=94.35 E-value=0.15 Score=30.05 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 999999999845899699998787868899999999760788
Q gi|254780824|r 19 TICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 19 t~~la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.....+..+..-.++..++++|+-|+|||-+.+++++.....
T Consensus 28 ~~~~l~~~~~~~~~~~~l~i~G~~G~GKTHLl~a~~~~~~~~ 69 (227)
T PRK08903 28 LVTRLRELAAGPVADRFFYLWGEAGSGRSHLLQALVAAASEG 69 (227)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 999999887438878669998999998889999999999806
No 361
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.35 E-value=0.039 Score=33.56 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 999987878688999999997607
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
||.+.|-=||||||+++.|.+.++
T Consensus 1 iIgIaG~S~SGKTTla~~L~~~l~ 24 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 989968888759999999999879
No 362
>KOG1969 consensus
Probab=94.35 E-value=0.047 Score=33.09 Aligned_cols=31 Identities=29% Similarity=0.207 Sum_probs=26.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 8996999987878688999999997607888
Q gi|254780824|r 31 RLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 31 ~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
++..|++|.|.=|.||||+++-+++.-|+.-
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYsV 354 (877)
T KOG1969 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYSV 354 (877)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEE
T ss_conf 8400687536887872479999998628548
No 363
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=94.34 E-value=0.12 Score=30.54 Aligned_cols=83 Identities=12% Similarity=0.191 Sum_probs=43.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCH----HHHHHHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCE
Q ss_conf 9998787868899999999760788853024520----2011003788608999865178977753058367508--978
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPT----FTLVQLYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ERI 109 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPT----F~l~~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i 109 (162)
|++-|+-|+|||+|++-++.+--... ..|| |.. ..+.....-+.+.+|-..+.+++..+. ..++. +++
T Consensus 3 i~vvG~~~vGKTsli~r~~~~~f~~~----~~~ti~~~~~~-k~i~~~~~~~~l~iwDt~G~~~~~~~~-~~~~~~a~~~ 76 (162)
T cd04123 3 VVLLGEGRVGKTSLVLRYVENKFNEK----HESTTQASFFQ-KTVNIGGKRIDLAIWDTAGQERYHALG-PIYYRDADGA 76 (162)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCEEEEEE-EEEEECCEEEEEEEEECCCCCCCCCCC-HHHEECCCEE
T ss_conf 99999999679999999983989987----67752647999-999999999999999589973035563-1330114457
Q ss_pred EEE-------------ECHHHHHCCCCC
Q ss_conf 999-------------985563204995
Q gi|254780824|r 110 CII-------------EWPEIGRSLLPK 124 (162)
Q Consensus 110 ~lI-------------EWpe~~~~~lp~ 124 (162)
+++ +|-+.+....++
T Consensus 77 ilv~d~t~~~Sf~~i~~~~~~i~~~~~~ 104 (162)
T cd04123 77 ILVYDITDADSFQKVKKWIKELKQMRGN 104 (162)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 9996389989999999999999987699
No 364
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=94.33 E-value=0.094 Score=31.27 Aligned_cols=72 Identities=10% Similarity=0.151 Sum_probs=40.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCEEE
Q ss_conf 6999987878688999999997607888530245202011003788608999865178977753058367508--97899
Q gi|254780824|r 34 DCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ERICI 111 (162)
Q Consensus 34 ~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i~l 111 (162)
--|++-|+-||||||+++-+..+--. -+.||-.. +...-...=+.+.++-+.+.+.+..+ ...|+. +++++
T Consensus 16 ~KililG~~~sGKTsil~~l~~~~~~-----~~~pT~G~-~~~~i~~~~~~~~iwD~~G~e~~~~~-~~~y~~~a~~ii~ 88 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVV-----HTSPTIGS-NVEEIVYKNIRFLMWDIGGQESLRSS-WNTYYTNTDAVIL 88 (174)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC-----CCCCCCCC-CEEEEEECCEEEEEEECCCCCCCCCH-HHHHHCCCCEEEE
T ss_conf 99999989999889999999739927-----71672360-46999978889999989998656622-6777057753799
Q ss_pred E
Q ss_conf 9
Q gi|254780824|r 112 I 112 (162)
Q Consensus 112 I 112 (162)
|
T Consensus 89 V 89 (174)
T cd04153 89 V 89 (174)
T ss_pred E
T ss_conf 9
No 365
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.33 E-value=0.05 Score=32.91 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=23.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 999987878688999999997607888
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
+|.+.|--||||||.++.+.+.|...+
T Consensus 2 ~IviEG~dGsGKsT~~~~L~~~L~~~g 28 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARG 28 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 899989989999999999999999779
No 366
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.32 E-value=0.049 Score=32.98 Aligned_cols=34 Identities=29% Similarity=0.395 Sum_probs=27.3
Q ss_pred HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 9984589969999878786889999999976078
Q gi|254780824|r 26 LASILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 26 la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
+.-.++.|.++.|-|+=||||||+-|.|+--...
T Consensus 21 i~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p 54 (345)
T COG1118 21 ISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP 54 (345)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 3155068868999778987678899998575778
No 367
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=94.32 E-value=0.049 Score=32.96 Aligned_cols=33 Identities=30% Similarity=0.354 Sum_probs=28.1
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 458996999987878688999999997607888
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
-++|+.|++..|+-|.||||++|++++-+...-
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~t 97 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQT 97 (1077)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 589975899636998874689999999987754
No 368
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=94.28 E-value=0.045 Score=33.19 Aligned_cols=39 Identities=23% Similarity=0.396 Sum_probs=32.0
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 999999845899699998787868899999999760788
Q gi|254780824|r 22 LGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 22 la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.=+.+.=.+++|..+++.|+=|+||||++|-++.-+-..
T Consensus 480 vl~~vsl~i~~Ge~vaIvG~sGsGKSTL~kll~Gl~~p~ 518 (694)
T TIGR03375 480 ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT 518 (694)
T ss_pred HHCCHHHEECCCCEEEEEECCCCCHHHHHHHHCCCCCCC
T ss_conf 213631188799789998058987889999855675899
No 369
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.27 E-value=0.1 Score=31.07 Aligned_cols=29 Identities=34% Similarity=0.425 Sum_probs=26.0
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 58996999987878688999999997607
Q gi|254780824|r 30 LRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 30 l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
.+.|.+|.+.|+-|+||||+++.+++...
T Consensus 4 ~~~g~livisGPSG~GK~tl~~~L~~~~p 32 (208)
T PRK00300 4 MRRGLLIVLSAPSGAGKSTLVRALLERDP 32 (208)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 41883899999998899999999997299
No 370
>TIGR02142 modC_ABC molybdate ABC transporter, ATP-binding protein; InterPro: IPR011868 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulphate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulphate transporter rather than by a specific molybdate transporter.; GO: 0005524 ATP binding, 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=94.25 E-value=0.043 Score=33.34 Aligned_cols=26 Identities=38% Similarity=0.447 Sum_probs=22.2
Q ss_pred CCC-CEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 899-69999878786889999999976
Q gi|254780824|r 31 RLG-DCLTLSGDLGSGKSFLARSIIRF 56 (162)
Q Consensus 31 ~~g-~ii~L~GdLGaGKTtfvr~i~~~ 56 (162)
-|| .|.+|.|.=||||||++|.++-=
T Consensus 20 ~pg~GvtAlFG~SGsGKTtli~~iaGL 46 (361)
T TIGR02142 20 LPGQGVTALFGRSGSGKTTLIRLIAGL 46 (361)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHC
T ss_conf 287406871258997078999998731
No 371
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=94.25 E-value=0.14 Score=30.30 Aligned_cols=70 Identities=7% Similarity=0.174 Sum_probs=37.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHH--HHHHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CC
Q ss_conf 969999878786889999999976078885302452020--11003788608999865178977753058367508--97
Q gi|254780824|r 33 GDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFT--LVQLYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ER 108 (162)
Q Consensus 33 g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~--l~~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~ 108 (162)
-.-|++-|+-||||||+++.+...- .. -+.||.. +.+....+ +-+.+|=+.+.+.+..+ ...|+. ++
T Consensus 14 ~~Ki~ilG~~~sGKTsll~~l~~~~-~~----~~~pT~g~~~~~v~~~~---~~~~lwD~~G~~~~~~~-~~~y~~~a~~ 84 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASED-IS----HITPTQGFNIKTVQSDG---FKLNVWDIGGQRAIRPY-WRNYFENTDC 84 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC-CC----CCCCCCCEEEEEEEECC---EEEEEEECCCCHHHHHH-HHHHCCCCCE
T ss_conf 7589999799998899999985699-86----60681132379999899---99999855875101268-9976555637
Q ss_pred EEE
Q ss_conf 899
Q gi|254780824|r 109 ICI 111 (162)
Q Consensus 109 i~l 111 (162)
+++
T Consensus 85 iI~ 87 (173)
T cd04155 85 LIY 87 (173)
T ss_pred EEE
T ss_conf 999
No 372
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.24 E-value=0.045 Score=33.20 Aligned_cols=27 Identities=33% Similarity=0.458 Sum_probs=23.3
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 458996999987878688999999997
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIR 55 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~ 55 (162)
.+++|.++.+-|+=|+||||+.|.+..
T Consensus 27 ~i~~Ge~~~ivG~SGsGKSTllr~i~g 53 (233)
T cd03258 27 SVPKGEIFGIIGRSGAGKSTLIRCING 53 (233)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999988980589999999967
No 373
>pfam12128 DUF3584 Protein of unknown function (DUF3584). This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. There are two conserved sequence motifs: GKT and YLP.
Probab=94.23 E-value=0.082 Score=31.63 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=28.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 9998787868899999999760788853024520
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPT 69 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPT 69 (162)
+-+.|.=||||||+.|.+.=..|-++. .|.+||
T Consensus 20 t~~~GTnG~GKTTlLRlIp~FYga~p~-rlv~~~ 52 (1192)
T pfam12128 20 TNICGTNAAGKTTLQRLIPLFYGEYPS-RIVPKT 52 (1192)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCHH-HCCCCC
T ss_conf 257448888699999899975289755-328874
No 374
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=94.23 E-value=0.048 Score=33.01 Aligned_cols=77 Identities=25% Similarity=0.400 Sum_probs=42.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCC--C-CCCC--------HHHHHHHCCCC-CCEEEEEE---ECC----CCHHHH
Q ss_conf 9998787868899999999760788853--0-2452--------02011003788-60899986---517----897775
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDAL--E-VLSP--------TFTLVQLYDAS-IPVAHFDF---YRL----SSHQEV 96 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~--~-V~SP--------TF~l~~~Y~~~-~~i~H~Dl---YRL----~~~~E~ 96 (162)
|++.|+-|+||||+++-+++.|...+.. . .+.+ -|.++....+. ..+.|.|. +|. -+.+++
T Consensus 2 i~ITG~pGvGKTTli~kv~~~l~~~~~~v~GF~T~evre~g~R~GF~iv~l~~g~~~~la~~~~~~~~~vGky~v~~~~f 81 (168)
T pfam03266 2 IFITGPPGVGKTTLVKKVIELLKSEGVKVGGFYTPEVREGGRRIGFDIVDLASGERGPLARVGGVSGPRVGKYVVNLEEF 81 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCEECCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCEECHHHH
T ss_conf 89978999889999999999998679707489930212589378999999047826774440688775457716668999
Q ss_pred HCCCHHHH---CCC-CEEEE
Q ss_conf 30583675---089-78999
Q gi|254780824|r 97 VELGFDEI---LNE-RICII 112 (162)
Q Consensus 97 ~~lg~~e~---~~~-~i~lI 112 (162)
+.++++.. ..+ .+++|
T Consensus 82 e~~~~~~L~~a~~~~dlivI 101 (168)
T pfam03266 82 EEIALPALRRALEEADLIII 101 (168)
T ss_pred HHHHHHHHHHCCCCCCEEEE
T ss_conf 99999999840668989999
No 375
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.23 E-value=0.047 Score=33.10 Aligned_cols=28 Identities=32% Similarity=0.350 Sum_probs=25.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 9969999878786889999999976078
Q gi|254780824|r 32 LGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 32 ~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
.|.++.|.|+=||||+|++|.+.+..+.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l 30 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKL 30 (191)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCE
T ss_conf 8639999899888889999999863493
No 376
>PRK04182 cytidylate kinase; Provisional
Probab=94.22 E-value=0.06 Score=32.45 Aligned_cols=28 Identities=36% Similarity=0.330 Sum_probs=25.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 6999987878688999999997607888
Q gi|254780824|r 34 DCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 34 ~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
.+|.+.|+.||||+|.++.+++-||+.-
T Consensus 1 m~ItI~g~~GSGk~tIak~LA~~lg~~~ 28 (178)
T PRK04182 1 MRITISGPPGSGKTTVARLLAEKLGLKL 28 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCEE
T ss_conf 9899958998887999999999959938
No 377
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=94.22 E-value=0.075 Score=31.85 Aligned_cols=40 Identities=23% Similarity=0.319 Sum_probs=30.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 8996999987878688999999997607888530245202
Q gi|254780824|r 31 RLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTF 70 (162)
Q Consensus 31 ~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF 70 (162)
..+..|+|-|.-|||||++++.+...++..+...|.+-.|
T Consensus 10 ~~Pkai~laG~pGAGKS~~~~~~~~~~~~~~~v~In~D~~ 49 (191)
T pfam06414 10 ERPVAVLLGGQPGAGKTELARALLEELGGGNVVRIDPDEL 49 (191)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCHHH
T ss_conf 6987999957998888999999987537899389713587
No 378
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=94.21 E-value=0.032 Score=34.07 Aligned_cols=93 Identities=18% Similarity=0.178 Sum_probs=53.6
Q ss_pred HHHHHHC---CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCHHHHHCCC
Q ss_conf 9999845---8996999987878688999999997607888530245202011003788608999865178977753058
Q gi|254780824|r 24 RHLASIL---RLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDASIPVAHFDFYRLSSHQEVVELG 100 (162)
Q Consensus 24 ~~la~~l---~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~~~~i~H~DlYRL~~~~E~~~lg 100 (162)
+.+.+.+ +-+..++|.|+-|.||++|++.+++.+-..... .-| -.-++.-.--..=.|-|+|.+....+-..++
T Consensus 13 ~~l~~~~~~~rl~HA~L~~g~~G~Gk~~la~~la~~LlC~~~~--~~~-Cg~C~sC~l~~~g~HPD~~~i~pe~~~k~I~ 89 (319)
T PRK06090 13 QNWKSGLDAERIPGALLLQSDEGLGVESLVELFSHALLCQNYQ--SEA-CGFCHSCELMKSGNHPDLHVIKPEKEGKSIT 89 (319)
T ss_pred HHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC--CCC-CCCCHHHHHHHCCCCCCCEEEECCCCCCCCC
T ss_conf 9999999869963067667999857999999999998089999--998-8778779998758999823661233567687
Q ss_pred HHHH------C------C-CCEEEEECHHHHH
Q ss_conf 3675------0------8-9789999855632
Q gi|254780824|r 101 FDEI------L------N-ERICIIEWPEIGR 119 (162)
Q Consensus 101 ~~e~------~------~-~~i~lIEWpe~~~ 119 (162)
+++. . + ..|++|+=+|++.
T Consensus 90 vd~IR~l~~~~~~~~~~g~~KV~iI~~ae~m~ 121 (319)
T PRK06090 90 VEQIRQCNRLAQESSQLGGYRLFVIEPADAMN 121 (319)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCHHHCC
T ss_conf 99999999997545210693699981444349
No 379
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.20 E-value=0.067 Score=32.15 Aligned_cols=28 Identities=25% Similarity=0.463 Sum_probs=24.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 6999987878688999999997607888
Q gi|254780824|r 34 DCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 34 ~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
.+|+..|+.|+||||+..+++..+....
T Consensus 2 GliLitG~TGSGKTTtl~all~~i~~~~ 29 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNK 29 (198)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 3899989999979999999998536378
No 380
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=94.20 E-value=0.16 Score=29.91 Aligned_cols=86 Identities=14% Similarity=0.229 Sum_probs=49.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH---HHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCEE
Q ss_conf 99987878688999999997607888530245202011---003788608999865178977753058367508--9789
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLV---QLYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ERIC 110 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~---~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i~ 110 (162)
|.+-||-|+|||+|++-++..--... .+||-..- ....-+..-+.+.++=..+.+.+..+- ..++. ++++
T Consensus 10 ivllGd~~VGKTsli~r~~~~~f~~~----~~~Tig~d~~~k~i~~~~~~v~l~iwDtaG~e~~~~l~-~~~~~~a~~~i 84 (169)
T cd04114 10 IVLIGNAGVGKTCLVRRFTQGLFPPG----QGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSIT-QSYYRSANALI 84 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCH-HHHHHCCCEEE
T ss_conf 99999899799999999985989998----67741247899999999999999999899984445155-77742366459
Q ss_pred EE-------------ECHHHHHCCCCCCE
Q ss_conf 99-------------98556320499540
Q gi|254780824|r 111 II-------------EWPEIGRSLLPKKY 126 (162)
Q Consensus 111 lI-------------EWpe~~~~~lp~~~ 126 (162)
+| +|-+.+...-+...
T Consensus 85 lvydvt~~~Sf~~l~~w~~~i~~~~~~~~ 113 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQYANNKV 113 (169)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 98148988899999999999998689886
No 381
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.20 E-value=0.055 Score=32.66 Aligned_cols=30 Identities=30% Similarity=0.198 Sum_probs=23.9
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 458996999987878688999999997607
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
.+++|.++++.|+=||||||++...+...|
T Consensus 17 ~i~~Ge~~aIvG~nGsGKSTL~~~~l~~~g 46 (226)
T cd03270 17 DIPRNKLVVITGVSGSGKSSLAFDTIYAEG 46 (226)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 985998999987899609898361663323
No 382
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.18 E-value=0.062 Score=32.37 Aligned_cols=30 Identities=30% Similarity=0.461 Sum_probs=26.4
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 458996999987878688999999997607
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
.+++|..+.+-|+=||||||+.|.+.....
T Consensus 26 ~I~~GE~VaiIG~SGaGKSTLLR~lngl~d 55 (258)
T COG3638 26 EINQGEMVAIIGPSGAGKSTLLRSLNGLVD 55 (258)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 757986899987888868999999866658
No 383
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=94.18 E-value=0.041 Score=33.44 Aligned_cols=30 Identities=30% Similarity=0.376 Sum_probs=25.7
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 458996999987878688999999997607
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
.+.+|.++.|-|+=||||||++|.+...+.
T Consensus 26 ~i~~Ge~~~lvG~nGaGKSTL~~~l~G~~~ 55 (501)
T PRK11288 26 DVRAGQVHALMGENGAGKSTLLKILSGNYQ 55 (501)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 988981999989999819999999847999
No 384
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=94.17 E-value=0.066 Score=32.21 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=24.3
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 845899699998787868899999999760
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFL 57 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~l 57 (162)
-.+.+|.++.+-|+=||||||+.|-+ .+|
T Consensus 29 l~i~~Ge~v~i~G~nGsGKSTll~~l-~gl 57 (648)
T PRK10535 29 LTIYAGEMVAIVGASGSGKSTLMNIL-GCL 57 (648)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHH-HCC
T ss_conf 99989989999999996299999999-569
No 385
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.15 E-value=0.15 Score=30.08 Aligned_cols=40 Identities=23% Similarity=0.412 Sum_probs=29.8
Q ss_pred HHHHHHHC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 99999845-89969999878786889999999976078885
Q gi|254780824|r 23 GRHLASIL-RLGDCLTLSGDLGSGKSFLARSIIRFLMHDDA 62 (162)
Q Consensus 23 a~~la~~l-~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~ 62 (162)
.+.++... .+..-++|.|+.|+|||.++-+|++.+--.+.
T Consensus 172 ~~~fi~~F~~~~~nLlf~G~~G~GKTfLa~~IA~ell~~g~ 212 (330)
T PRK06835 172 CLNFIKNFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGK 212 (330)
T ss_pred HHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 99998724788886698899999889999999999998799
No 386
>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Probab=94.13 E-value=0.099 Score=31.14 Aligned_cols=24 Identities=42% Similarity=0.560 Sum_probs=21.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 999878786889999999976078
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
|.|.|+=|.|||++++.+++.+..
T Consensus 1 i~l~G~~G~GKS~~a~~la~~~~~ 24 (105)
T pfam00910 1 IWLYGPPGCGKSTLAKYLARALLD 24 (105)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 989799989889999999999999
No 387
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=94.13 E-value=0.16 Score=29.89 Aligned_cols=70 Identities=23% Similarity=0.336 Sum_probs=43.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC----CCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCE
Q ss_conf 999878786889999999976078885302452020110037----88608999865178977753058367508--978
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD----ASIPVAHFDFYRLSSHQEVVELGFDEILN--ERI 109 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~----~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i 109 (162)
|.+-||-|+|||+|++-++.+--... ..||-. ..|. -+...+.++++-..+.+++..+ ...++. +++
T Consensus 4 vvlvGd~~VGKTsli~r~~~~~F~~~----y~~Ti~--~~~~k~~~i~~~~~~l~iwDtaG~e~~~~l-~~~~~~~a~~~ 76 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQNHFVDE----YDPTIE--DSYRKQVVIDGETCLLDILDTAGQEEYSAM-RDQYMRTGEGF 76 (162)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCC--CEEEEEEEECCEEEEEEEEECCCCCCCCHH-HHHHHCCCCEE
T ss_conf 99989999889999999983928875----688555--279999999999999999979986011147-89871578779
Q ss_pred EEE
Q ss_conf 999
Q gi|254780824|r 110 CII 112 (162)
Q Consensus 110 ~lI 112 (162)
+++
T Consensus 77 ilv 79 (162)
T cd04138 77 LCV 79 (162)
T ss_pred EEE
T ss_conf 999
No 388
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=94.13 E-value=0.16 Score=29.85 Aligned_cols=60 Identities=20% Similarity=0.234 Sum_probs=33.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH---HHCCCCCCEEEEEEECCCCHHHHHCC
Q ss_conf 99987878688999999997607888530245202011---00378860899986517897775305
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLV---QLYDASIPVAHFDFYRLSSHQEVVEL 99 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~---~~Y~~~~~i~H~DlYRL~~~~E~~~l 99 (162)
|++-|+-|+|||+|++-++.+--... ..||-..- .....+..-+.+.++=..+.+++..+
T Consensus 3 ivvvG~~~vGKTsli~r~~~~~f~~~----~~~ti~~~~~~~~~~~~~~~~~l~iwDt~g~~~~~~~ 65 (161)
T cd01863 3 ILLIGDSGVGKSSLLLRFTDDTFDPD----LAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTL 65 (161)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCCCC
T ss_conf 99999799579999999963999998----4873133423899999999999999999998423534
No 389
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=94.13 E-value=0.055 Score=32.67 Aligned_cols=27 Identities=37% Similarity=0.471 Sum_probs=24.3
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 589969999878786889999999976
Q gi|254780824|r 30 LRLGDCLTLSGDLGSGKSFLARSIIRF 56 (162)
Q Consensus 30 l~~g~ii~L~GdLGaGKTtfvr~i~~~ 56 (162)
+.+|.++.|-|+=|+||||+.|.++.-
T Consensus 47 I~~GEi~~lvGpSGsGKSTLLr~i~GL 73 (382)
T TIGR03415 47 IEEGEICVLMGLSGSGKSSLLRAVNGL 73 (382)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 879989999999973499999999759
No 390
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=94.09 E-value=0.2 Score=29.33 Aligned_cols=72 Identities=13% Similarity=0.259 Sum_probs=43.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH---HHCCC-CCCEEEEEEECCCCHHHHHCCCHHHHCC--CCE
Q ss_conf 99987878688999999997607888530245202011---00378-8608999865178977753058367508--978
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLV---QLYDA-SIPVAHFDFYRLSSHQEVVELGFDEILN--ERI 109 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~---~~Y~~-~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i 109 (162)
|.|-|+=|+|||.|++-++.+--... ..||...- ..+.. +...+++++|=..+.+.+..+ ...|+. +++
T Consensus 3 vvllGd~gVGKTsLi~rf~~~~F~~~----y~~Tig~df~~k~i~~~~~~~v~l~iwDtaGqe~~~~l-~~~y~~~a~~~ 77 (201)
T cd04107 3 VLVIGDLGVGKTSIIKRYVHGIFSQH----YKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGM-TRVYYRGAVGA 77 (201)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCCEEEEEEEEEECCCEEEEEEEEECCCCCCCCCC-HHHHCCCCCEE
T ss_conf 99999999789999999982999998----88875677899899967981999999868998322200-37555577647
Q ss_pred EEE
Q ss_conf 999
Q gi|254780824|r 110 CII 112 (162)
Q Consensus 110 ~lI 112 (162)
++|
T Consensus 78 ilv 80 (201)
T cd04107 78 IIV 80 (201)
T ss_pred EEE
T ss_conf 999
No 391
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.08 E-value=0.11 Score=30.91 Aligned_cols=33 Identities=36% Similarity=0.429 Sum_probs=27.5
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 458996999987878688999999997607888
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
.+-.|.-++|.|+=|.|||+++|.+++.++.+-
T Consensus 39 a~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~ 71 (329)
T COG0714 39 ALLAGGHVLLEGPPGVGKTLLARALARALGLPF 71 (329)
T ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 998599778779898777999999999838981
No 392
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=94.08 E-value=0.15 Score=30.00 Aligned_cols=70 Identities=24% Similarity=0.362 Sum_probs=40.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC----CCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCE
Q ss_conf 999878786889999999976078885302452020110037----88608999865178977753058367508--978
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD----ASIPVAHFDFYRLSSHQEVVELGFDEILN--ERI 109 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~----~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i 109 (162)
|.+-||-|+|||+|++-++.+--... ..||-. ..|. -+...+.+.++=..+.+++..+ -..++. +++
T Consensus 3 iv~vGd~~vGKTsli~r~~~~~f~~~----y~~Ti~--~~~~k~i~~~~~~~~l~iwDt~G~e~~~~~-~~~~~~~a~~~ 75 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQGHFVDD----YDPTIE--DSYRKQIEIDGEVCLLDILDTAGQEEFSAM-RDQYMRTGEGF 75 (164)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCEE--EEEEEEEEECCEEEEEEEEECCCCCCHHHH-HHHHCCCCCEE
T ss_conf 99999999789999999972979987----788136--789999999999999999989997103567-77753798779
Q ss_pred EEE
Q ss_conf 999
Q gi|254780824|r 110 CII 112 (162)
Q Consensus 110 ~lI 112 (162)
+++
T Consensus 76 ilv 78 (164)
T smart00173 76 LLV 78 (164)
T ss_pred EEE
T ss_conf 998
No 393
>PHA02244 ATPase-like protein
Probab=94.08 E-value=0.072 Score=31.98 Aligned_cols=60 Identities=23% Similarity=0.273 Sum_probs=42.7
Q ss_pred HHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC--C----CCCEEEEEEEC
Q ss_conf 99984589969999878786889999999976078885302452020110037--8----86089998651
Q gi|254780824|r 25 HLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD--A----SIPVAHFDFYR 89 (162)
Q Consensus 25 ~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~--~----~~~i~H~DlYR 89 (162)
.+++..+..--++|.|.-|+|||+-++.++++|..+- -+|=.++++|+ | +....--+|||
T Consensus 111 ~i~~~v~~nipV~L~G~AGsGKt~~A~qIA~aLdl~F-----Yf~gAI~~ef~L~Gf~DAnG~yh~T~f~k 176 (383)
T PHA02244 111 DIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALDLDF-----YFMNAIMDEFELKGFIDANGKFHETPFYE 176 (383)
T ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCC-----EECHHHHHHHHCCCEECCCCCEECCHHHH
T ss_conf 8999873598569975888863489999999858882-----44132301343012564899672638999
No 394
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=94.07 E-value=0.061 Score=32.40 Aligned_cols=47 Identities=21% Similarity=0.367 Sum_probs=34.3
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC------CCCC-CCCHHHHHHH
Q ss_conf 458996999987878688999999997607888------5302-4520201100
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDD------ALEV-LSPTFTLVQL 75 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~------~~~V-~SPTF~l~~~ 75 (162)
.++.|.+++|-|.=||||||+.|.+........ -.+| ..|++.++..
T Consensus 25 ~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~ 78 (237)
T COG0410 25 EVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARL 78 (237)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHC
T ss_conf 876898899989998888999999858987887069989835677997899857
No 395
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.07 E-value=0.12 Score=30.61 Aligned_cols=38 Identities=24% Similarity=0.170 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 99999999984589969999878786889999999976
Q gi|254780824|r 19 TICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRF 56 (162)
Q Consensus 19 t~~la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~ 56 (162)
+.+.-....+..+...-|++.||-|+||++|+|+|-.+
T Consensus 334 ~~~~~~~a~~~a~~~~pVLI~GE~GtGKe~lAraIH~~ 371 (639)
T PRK11388 334 MRRLIHFGRQAAKSSFPILLCGEEGVGKALLAQAIHNE 371 (639)
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHC
T ss_conf 99999999999688996898898981099999999955
No 396
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=94.07 E-value=0.18 Score=29.60 Aligned_cols=60 Identities=20% Similarity=0.284 Sum_probs=35.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH---HHCCCCCCEEEEEEECCCCHHHHHCC
Q ss_conf 99987878688999999997607888530245202011---00378860899986517897775305
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLV---QLYDASIPVAHFDFYRLSSHQEVVEL 99 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~---~~Y~~~~~i~H~DlYRL~~~~E~~~l 99 (162)
|++-|+-|+|||+|++-++.+--... ..||-..- ....-+..-+++.++=..+.+.+..+
T Consensus 4 ivviGd~~vGKTsli~r~~~~~f~~~----~~~Tig~~~~~k~i~~~~~~v~l~iwDtaG~e~~~~~ 66 (163)
T cd01860 4 LVLLGDSSVGKSSLVLRFVKNEFSEN----QESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSL 66 (163)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHH
T ss_conf 99999599689999999943989998----6886667889999999999999999979997100278
No 397
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.01 E-value=0.21 Score=29.19 Aligned_cols=31 Identities=29% Similarity=0.277 Sum_probs=26.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 8996999987878688999999997607888
Q gi|254780824|r 31 RLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 31 ~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
.++..+++.|+=|+|||.+.+++++.....+
T Consensus 36 ~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~ 66 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEERG 66 (226)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 6888699989999988999999999986269
No 398
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=93.99 E-value=0.15 Score=30.01 Aligned_cols=85 Identities=15% Similarity=0.208 Sum_probs=47.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH---HHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCEE
Q ss_conf 99987878688999999997607888530245202011---003788608999865178977753058367508--9789
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLV---QLYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ERIC 110 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~---~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i~ 110 (162)
|.+-||-|+|||+|++-++.+--... ..||-..- ..+.-+...+++.++-..+.+.+..+ ...++. ++++
T Consensus 5 iv~vGd~~vGKTsli~r~~~~~f~~~----y~~Tig~~~~~~~i~~~~~~~~l~iwDtaG~e~~~~~-~~~~~~~a~~~i 79 (166)
T cd01869 5 LLLIGDSGVGKSCLLLRFADDTYTES----YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI-TSSYYRGAHGII 79 (166)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC----CCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCC-HHHHHHHCCEEE
T ss_conf 99999999789999999943999987----4785440489999999999999999989998234626-788856326779
Q ss_pred EE-------------ECHHHHHCCCCCC
Q ss_conf 99-------------9855632049954
Q gi|254780824|r 111 II-------------EWPEIGRSLLPKK 125 (162)
Q Consensus 111 lI-------------EWpe~~~~~lp~~ 125 (162)
++ +|-+.+....+++
T Consensus 80 lvfdit~~~Sf~~i~~w~~~i~~~~~~~ 107 (166)
T cd01869 80 IVYDVTDQESFNNVKQWLQEIDRYASEN 107 (166)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9711799899999999999999867877
No 399
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.98 E-value=0.062 Score=32.36 Aligned_cols=32 Identities=31% Similarity=0.392 Sum_probs=27.0
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+.+|.++.+-|+=||||||+.|.++.-+-.+
T Consensus 20 ~i~~Ge~~~ilGpSGsGKSTLl~li~Gl~~p~ 51 (211)
T cd03298 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ 51 (211)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 98899899999999955999999997699988
No 400
>KOG0733 consensus
Probab=93.96 E-value=0.15 Score=30.00 Aligned_cols=46 Identities=26% Similarity=0.243 Sum_probs=34.3
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCC
Q ss_conf 5899699998787868899999999760788853024520201100378
Q gi|254780824|r 30 LRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDA 78 (162)
Q Consensus 30 l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~ 78 (162)
+.|+-=++|+|+=|.|||.|+++|+..||+.-. .|+-| .|+.-|.|
T Consensus 220 v~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~-~isAp--eivSGvSG 265 (802)
T KOG0733 220 VRPPRGVLLHGPPGCGKTSLANAIAGELGVPFL-SISAP--EIVSGVSG 265 (802)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEE-EECCH--HHHCCCCC
T ss_conf 779975164489986478999997521288548-51414--65315575
No 401
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=93.96 E-value=0.12 Score=30.72 Aligned_cols=136 Identities=14% Similarity=0.145 Sum_probs=69.4
Q ss_pred HHHHHHHHCCCC---CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCC--HHHHHHHCC-CC-CCEEEEEEECCCCHH
Q ss_conf 999999845899---69999878786889999999976078885302452--020110037-88-608999865178977
Q gi|254780824|r 22 LGRHLASILRLG---DCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSP--TFTLVQLYD-AS-IPVAHFDFYRLSSHQ 94 (162)
Q Consensus 22 la~~la~~l~~g---~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SP--TF~l~~~Y~-~~-~~i~H~DlYRL~~~~ 94 (162)
..+.|.+.+..| ...+|.|+=|+|||+.+|.|++++.+.... -..| ....|.... ++ ..+..+|.=--.+.+
T Consensus 23 i~~~L~nal~~~ri~HAyLF~GP~GtGKts~ArifAkaLnC~~~~-~~~pC~~C~~C~~i~~g~~~DviEidaas~~gVd 101 (557)
T PRK07270 23 VATTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQV-DGEPCNNCDICRDITNGSLEDVIEIDAASNNGVD 101 (557)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCHH
T ss_conf 999999999859954044210899868999999999995799989-9998887779999875899974873477767889
Q ss_pred HHHCCCHHHHCC--C---CEEEEECHHHHHC--------C---CCCCEEEEEEEECCC-------EEE--EEEE--ECCH
Q ss_conf 753058367508--9---7899998556320--------4---995409999987398-------769--9999--5860
Q gi|254780824|r 95 EVVELGFDEILN--E---RICIIEWPEIGRS--------L---LPKKYIDIHLSQGKT-------GRK--ATIS--AERW 147 (162)
Q Consensus 95 E~~~lg~~e~~~--~---~i~lIEWpe~~~~--------~---lp~~~i~I~i~~~~~-------~R~--i~i~--~~~~ 147 (162)
++.++--.-.+. . .|.+|.=++++.. . -|...+.|-+....+ +|- +.+. ....
T Consensus 102 ~IRei~~~~~~~P~~~~yKV~IIDEah~Ls~~A~NALLKtLEEPP~~~vFIL~Ttep~kIl~TI~SRCQrf~F~~i~~~~ 181 (557)
T PRK07270 102 EIRDIRDKSTYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTKA 181 (557)
T ss_pred HHHHHHHHHCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHCCCCCEEEEEEECCHHHCCHHHHHHHHHCCCCCCCHHH
T ss_conf 99999998423877788389997144534999999899985289987699998499475928887430001088899999
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999998
Q gi|254780824|r 148 IISHINQMNRS 158 (162)
Q Consensus 148 ~~~~l~~~~~~ 158 (162)
+..+++.+.++
T Consensus 182 i~~~L~~I~~~ 192 (557)
T PRK07270 182 IREHLAWILDK 192 (557)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998
No 402
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=93.95 E-value=0.055 Score=32.67 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=26.2
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 8458996999987878688999999997607
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
-.+.+|.++.|-|+=|+||||+.|.++.-.-
T Consensus 27 l~i~~Ge~~~llGpSG~GKTTlLr~iaGl~~ 57 (351)
T PRK11432 27 LTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK 57 (351)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 4988998999999996499999999976999
No 403
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=93.94 E-value=0.2 Score=29.28 Aligned_cols=34 Identities=32% Similarity=0.231 Sum_probs=29.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 996999987878688999999997607888530245
Q gi|254780824|r 32 LGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLS 67 (162)
Q Consensus 32 ~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~S 67 (162)
.-|-++|.|+=|-||||++.-+++.+|++- +++|
T Consensus 51 ~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~--k~ts 84 (332)
T COG2255 51 ALDHVLLFGPPGLGKTTLAHIIANELGVNL--KITS 84 (332)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCE--EECC
T ss_conf 767478647998768889999999856773--7636
No 404
>PRK07952 DNA replication protein DnaC; Validated
Probab=93.93 E-value=0.13 Score=30.35 Aligned_cols=51 Identities=22% Similarity=0.258 Sum_probs=35.4
Q ss_pred ECCCHHHHHH--HHHHHHHHCCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 8299899999--999999845899-69999878786889999999976078885
Q gi|254780824|r 12 PIPNEKNTIC--LGRHLASILRLG-DCLTLSGDLGSGKSFLARSIIRFLMHDDA 62 (162)
Q Consensus 12 ~l~~~~~t~~--la~~la~~l~~g-~ii~L~GdLGaGKTtfvr~i~~~lg~~~~ 62 (162)
.+.++.+-.+ -|+..+.....| .-+++.|+-|+|||.++-+|++.|--.+.
T Consensus 72 ~~~~~~q~~al~~a~~y~enf~~~~~gLlF~G~~GTGKThLA~aIan~Li~~G~ 125 (242)
T PRK07952 72 RVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGK 125 (242)
T ss_pred ECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 158777899999999999865438871799789999789999999999998799
No 405
>KOG1532 consensus
Probab=93.93 E-value=0.047 Score=33.10 Aligned_cols=41 Identities=17% Similarity=0.322 Sum_probs=31.6
Q ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 9845899699998787868899999999760788853024520201
Q gi|254780824|r 27 ASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTL 72 (162)
Q Consensus 27 a~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l 72 (162)
+...+.+.+|..-|=-|+|||||++-+...+--+ .+|-|.+
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~-----~~ppYvi 53 (366)
T KOG1532 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAK-----KTPPYVI 53 (366)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHC-----CCCCEEE
T ss_conf 5555687079999447788413999999998623-----6998088
No 406
>PRK10436 hypothetical protein; Provisional
Probab=93.93 E-value=0.22 Score=29.00 Aligned_cols=29 Identities=24% Similarity=0.301 Sum_probs=25.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 89969999878786889999999976078
Q gi|254780824|r 31 RLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 31 ~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
.|..+|+..|+-|+||||..-++++.+.-
T Consensus 213 ~p~GliLvtGPTGSGKTTTLya~L~~l~~ 241 (461)
T PRK10436 213 QPQGLVLVTGPTGSGKTVTLYSALQTLNT 241 (461)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 89977999789999569999999974346
No 407
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=93.91 E-value=0.077 Score=31.79 Aligned_cols=50 Identities=28% Similarity=0.370 Sum_probs=35.9
Q ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 999984589969999878786889999999976078885302452020110
Q gi|254780824|r 24 RHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQ 74 (162)
Q Consensus 24 ~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~ 74 (162)
+.++=....|.|..|-|+=||||||..|-++.-|-.+.- .|+--.+.++.
T Consensus 19 rdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G-~v~idg~d~~~ 68 (245)
T COG4555 19 RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSG-KVTIDGVDTVR 68 (245)
T ss_pred HHEEEEECCCEEEEEECCCCCCCHHHHHHHHHHCCCCCC-EEEEEECCCCC
T ss_conf 652578506649998768988712379999983258886-49984002101
No 408
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=93.90 E-value=0.061 Score=32.42 Aligned_cols=30 Identities=30% Similarity=0.479 Sum_probs=25.9
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 589969999878786889999999976078
Q gi|254780824|r 30 LRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 30 l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
+.+|.++.+-|+=|+||||+.|.+..-.-.
T Consensus 51 I~~GEi~~ivG~SGsGKSTLlr~i~gL~~P 80 (400)
T PRK10070 51 IEEGEIFVIMGLSGSGKSTMVRLLNRLIEP 80 (400)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 879999999999984699999999759998
No 409
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.84 E-value=0.18 Score=29.50 Aligned_cols=39 Identities=26% Similarity=0.409 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 999999999845899-6999987878688999999997607
Q gi|254780824|r 19 TICLGRHLASILRLG-DCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 19 t~~la~~la~~l~~g-~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
..+.|-.| ..+.|+ .=+++.|+=|+||||.+|+++.-|.
T Consensus 19 ~~k~aLll-~av~p~iGgVLi~G~~GtgKStlvRala~lLP 58 (347)
T CHL00081 19 EMKLALLL-NVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 58 (347)
T ss_pred HHHHHHHH-HHCCCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999-82578878699878998749999999998578
No 410
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=93.83 E-value=0.18 Score=29.62 Aligned_cols=83 Identities=18% Similarity=0.238 Sum_probs=45.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHC----CCCCCEEEEEEECCCCHHHHHCCCHHHHCC-CCEE
Q ss_conf 99987878688999999997607888530245202011003----788608999865178977753058367508-9789
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLY----DASIPVAHFDFYRLSSHQEVVELGFDEILN-ERIC 110 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y----~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~-~~i~ 110 (162)
|.+-||-|+|||+|++-++.+-=.. -..||- ...| .-+...+.+.++=..+.+++..+--..|.+ ++++
T Consensus 1 ivllGd~~VGKTsli~r~~~~~f~~----~y~~Ti--~~~~~~~~~~~~~~~~l~i~DtaG~e~~~~l~~~~~~~a~~~i 74 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPE----DYVPTV--FENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFL 74 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCC----CCCCCE--EEEEEEEEEECCEEEEEEEEECCCCCCCCCCCHHHCCCCCEEE
T ss_conf 5998978975999999995398999----857850--5789999999999999999948987034545001104886899
Q ss_pred EE-------------E-CHHHHHCCCCC
Q ss_conf 99-------------9-85563204995
Q gi|254780824|r 111 II-------------E-WPEIGRSLLPK 124 (162)
Q Consensus 111 lI-------------E-Wpe~~~~~lp~ 124 (162)
++ + |-+.+....|.
T Consensus 75 lvydvt~~~Sf~~~~~~w~~~i~~~~~~ 102 (174)
T smart00174 75 ICFSVDSPASFENVKEKWYPEVKHFCPN 102 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9975898789999999899999986889
No 411
>TIGR00955 3a01204 Pigment precourser permease; InterPro: IPR005284 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes different parts of a membrane-spanning permease system necessary for the transport of pigment precursor into pigment cells responsible for eye color. White protein dimerises with brown protein for the transport of guanine and with scarlet protein for the transport of tryptophan.; GO: 0006810 transport.
Probab=93.83 E-value=0.035 Score=33.83 Aligned_cols=44 Identities=18% Similarity=0.242 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 98999999999998458996999987878688999999997607
Q gi|254780824|r 15 NEKNTICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 15 ~~~~t~~la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
+...++.|=+..+..+++|.++++=|-=|||||||.-.++.-..
T Consensus 40 ~~~p~K~lL~~vSG~a~~GeLlA~mGsSGAGKTTLmn~La~R~~ 83 (671)
T TIGR00955 40 ISVPRKHLLKNVSGVAKPGELLAIMGSSGAGKTTLMNALAFRSP 83 (671)
T ss_pred CCCCCHHHHHCCCEEECCCEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 65652011103520210670689847876626899999853374
No 412
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.82 E-value=0.064 Score=32.30 Aligned_cols=33 Identities=36% Similarity=0.358 Sum_probs=27.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 699998787868899999999760788853024520
Q gi|254780824|r 34 DCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPT 69 (162)
Q Consensus 34 ~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPT 69 (162)
.+|...|.-|+||||.++-+++.+|..- |+|-+
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~---vsaG~ 33 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKL---VSAGT 33 (179)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHCCCE---EECCH
T ss_conf 9799617999970279999999829715---62127
No 413
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=93.82 E-value=0.18 Score=29.64 Aligned_cols=85 Identities=15% Similarity=0.227 Sum_probs=50.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH---HHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCEE
Q ss_conf 99987878688999999997607888530245202011---003788608999865178977753058367508--9789
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLV---QLYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ERIC 110 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~---~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i~ 110 (162)
|.+-||-|+|||+|++-++.+--.. -..||-..- ..+.-+..-+++.++=..+.+.+..+ ...|+. ++++
T Consensus 3 IvllGd~~VGKTsli~r~~~~~f~~----~~~~Tig~~~~~k~v~~~~~~i~l~iwDtaGqe~~~~~-~~~y~r~a~~~i 77 (161)
T cd04117 3 LLLIGDSGVGKTCLLCRFTDNEFHS----SHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTI-TKQYYRRAQGIF 77 (161)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCC----CCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCCC-HHHHHHHHCEEE
T ss_conf 9999949985899999994299899----87887208988999999999999999979996023635-588876416889
Q ss_pred EE-------------ECHHHHHCCCCCC
Q ss_conf 99-------------9855632049954
Q gi|254780824|r 111 II-------------EWPEIGRSLLPKK 125 (162)
Q Consensus 111 lI-------------EWpe~~~~~lp~~ 125 (162)
++ +|-+.+...-|+.
T Consensus 78 lvyDvt~~~Sf~~l~~w~~~i~~~~~~~ 105 (161)
T cd04117 78 LVYDISSERSYQHIMKWVSDVDEYAPEG 105 (161)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9614898899999999999999878998
No 414
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=93.81 E-value=0.069 Score=32.09 Aligned_cols=33 Identities=33% Similarity=0.503 Sum_probs=27.5
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 845899699998787868899999999760788
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
=.+.+|.++.|-|+=|+||||+.|.++.-+..+
T Consensus 26 l~i~~GE~~~llGpSG~GKTTlLr~iaGL~~p~ 58 (362)
T TIGR03258 26 LEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA 58 (362)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 199999899999999745999999997776777
No 415
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=93.80 E-value=0.078 Score=31.75 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=30.4
Q ss_pred HHHHHCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 9998458996-9999878786889999999976078885
Q gi|254780824|r 25 HLASILRLGD-CLTLSGDLGSGKSFLARSIIRFLMHDDA 62 (162)
Q Consensus 25 ~la~~l~~g~-ii~L~GdLGaGKTtfvr~i~~~lg~~~~ 62 (162)
...+|-+-|. ||+..|+=||||.|.+|.+++.||+.-.
T Consensus 25 ~~~~~~~~~~iIIAIDGPAGSGKSTVAk~lA~~LG~~yL 63 (863)
T PRK12269 25 TVLQCRPMGTVIIALDGPAGSGKSSVCRLLASRLGAQCL 63 (863)
T ss_pred EEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEE
T ss_conf 255304679889998689867889999999998299588
No 416
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.80 E-value=0.22 Score=29.01 Aligned_cols=87 Identities=22% Similarity=0.254 Sum_probs=47.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHH-HHHHCCCCCCEEEEEEECCCCHHHHHC-CCHH------
Q ss_conf 89969999878786889999999976078885302452020-110037886089998651789777530-5836------
Q gi|254780824|r 31 RLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFT-LVQLYDASIPVAHFDFYRLSSHQEVVE-LGFD------ 102 (162)
Q Consensus 31 ~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~-l~~~Y~~~~~i~H~DlYRL~~~~E~~~-lg~~------ 102 (162)
+.+..++|.|+=|.||||++..+++.++.........+... .++... .-.|.|++.++..++-.. +..+
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~d~lel~~s~~~~~~i~~~~vr~~~ 98 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIP---AGNHPDFLELNPSDLRKIDIIVEQVRELA 98 (325)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC---CCCCCCEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 887610037999997899999999996586643345520022444320---25688659977321333300699999999
Q ss_pred HHC------C-CCEEEEECHHHHHC
Q ss_conf 750------8-97899998556320
Q gi|254780824|r 103 EIL------N-ERICIIEWPEIGRS 120 (162)
Q Consensus 103 e~~------~-~~i~lIEWpe~~~~ 120 (162)
+.. . ..+++|+=.|.+..
T Consensus 99 ~~~~~~~~~~~~kviiidead~mt~ 123 (325)
T COG0470 99 EFLSESPLEGGYKVVIIDEADKLTE 123 (325)
T ss_pred HHCCCCCCCCCCEEEEEECCCCCCH
T ss_conf 8604465667726999732032698
No 417
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=93.80 E-value=0.22 Score=29.01 Aligned_cols=84 Identities=15% Similarity=0.198 Sum_probs=49.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHH---HCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCEE
Q ss_conf 999878786889999999976078885302452020110---03788608999865178977753058367508--9789
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQ---LYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ERIC 110 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~---~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i~ 110 (162)
|.|-||-|+|||+|++-++.+--. . -..||-..-. .+..+..-+++.++-..+.+.+..+ ...|+. ++++
T Consensus 3 ivlvGd~~VGKTsli~r~~~~~f~-~---~~~~Tig~~~~~~~~~~~~~~v~l~iwDtaGqe~~~~l-~~~y~~~a~~~i 77 (166)
T cd00877 3 LVLVGDGGTGKTTFVKRHLTGEFE-K---KYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGL-RDGYYIGGQCAI 77 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC-C---CCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHH-HHHHHCCCCEEE
T ss_conf 999999998889999999839999-9---86873255679999999997999999975787156668-788740065799
Q ss_pred EE-------------ECHHHHHCCCCC
Q ss_conf 99-------------985563204995
Q gi|254780824|r 111 II-------------EWPEIGRSLLPK 124 (162)
Q Consensus 111 lI-------------EWpe~~~~~lp~ 124 (162)
++ +|-+.+....|.
T Consensus 78 lvyDvt~~~Sf~~v~~w~~~i~~~~~~ 104 (166)
T cd00877 78 IMFDVTSRVTYKNVPNWHRDLVRVCGN 104 (166)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 843789888999999999999986899
No 418
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=93.79 E-value=0.17 Score=29.72 Aligned_cols=47 Identities=17% Similarity=0.106 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHH-------HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 998999999999998-------45899699998787868899999999760788
Q gi|254780824|r 14 PNEKNTICLGRHLAS-------ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 14 ~~~~~t~~la~~la~-------~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
..+++-.....+|+. ......++.+.|+..+|||||++.+++-+.-+
T Consensus 47 e~P~d~~~~~e~i~~~~~~~~~~~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~r 100 (398)
T COG1341 47 EVPEDRSEPLEEIADTWESKSESAGKVGVVMVVGPVDSGKSTLTTYLANKLLAR 100 (398)
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 281676317899763224420120687389998986767889999999887644
No 419
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=93.78 E-value=0.2 Score=29.36 Aligned_cols=72 Identities=10% Similarity=0.120 Sum_probs=41.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHH---HCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCEE
Q ss_conf 999878786889999999976078885302452020110---03788608999865178977753058367508--9789
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQ---LYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ERIC 110 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~---~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i~ 110 (162)
|.+-|+-|+|||+|++-++.+--... ..||-..-. ....+..-++++++=..+.+++..+ ...++. ++++
T Consensus 6 iv~lGd~~vGKTsli~r~~~~~f~~~----~~~Ti~~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~l-~~~~~~~a~~~i 80 (165)
T cd01864 6 IILIGDSNVGKTCVVQRFKSGTFSER----QGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTI-TQSYYRSANGAI 80 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCC-CHHHEECCCEEE
T ss_conf 99999999589999999964999998----7997543789999999999999999989998344535-075522156669
Q ss_pred EE
Q ss_conf 99
Q gi|254780824|r 111 II 112 (162)
Q Consensus 111 lI 112 (162)
++
T Consensus 81 lv 82 (165)
T cd01864 81 IA 82 (165)
T ss_pred EE
T ss_conf 97
No 420
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=93.78 E-value=0.12 Score=30.69 Aligned_cols=31 Identities=26% Similarity=0.208 Sum_probs=25.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 9969999878786889999999976078885
Q gi|254780824|r 32 LGDCLTLSGDLGSGKSFLARSIIRFLMHDDA 62 (162)
Q Consensus 32 ~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~ 62 (162)
...|++..|.=|||||||..+|.-+|=...+
T Consensus 27 ~k~i~li~G~NG~GKTTll~Ai~~~LYG~~~ 57 (650)
T TIGR03185 27 PKPIILIGGLNGAGKTTLLDAIQLGLYGKRA 57 (650)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 9987999779999789999999999569510
No 421
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=93.77 E-value=0.12 Score=30.64 Aligned_cols=40 Identities=23% Similarity=0.386 Sum_probs=29.9
Q ss_pred HHHHHHHHCCCC---CEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 999999845899---6999987878688999999997607888
Q gi|254780824|r 22 LGRHLASILRLG---DCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 22 la~~la~~l~~g---~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
..+.|.+.+..| .-.++.|+=|+|||+++|.|++.+-...
T Consensus 12 i~~~L~~~i~~~rl~HAyLF~Gp~G~GK~~~A~~~A~~ll~~~ 54 (313)
T PRK05564 12 IKNRIDNSIIKGKFSHASLIVGEDGIGKSILAKEIANKILGKS 54 (313)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 9999999998799875043279998509999999999982899
No 422
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.77 E-value=0.073 Score=31.93 Aligned_cols=30 Identities=37% Similarity=0.498 Sum_probs=25.8
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 845899699998787868899999999760
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFL 57 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~l 57 (162)
=.+.+|.++.+.|+=|+||||+.|.++--.
T Consensus 28 ~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 28 LEIERGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 996489789998489898889999995656
No 423
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transport system, ATP-binding protein component. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=93.77 E-value=0.069 Score=32.07 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=26.3
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 4589969999878786889999999976078
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
.+.+|.+++|-|+=|+||||+.|.++.-.-.
T Consensus 26 ~v~~Ge~~~llGpSG~GKtTlLr~iaGl~~p 56 (353)
T TIGR03265 26 SVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ 56 (353)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9989999999999953599999999769999
No 424
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=93.77 E-value=0.16 Score=29.82 Aligned_cols=60 Identities=15% Similarity=0.262 Sum_probs=34.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH---HHCCCCCCEEEEEEECCCCHHHHHCC
Q ss_conf 99987878688999999997607888530245202011---00378860899986517897775305
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLV---QLYDASIPVAHFDFYRLSSHQEVVEL 99 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~---~~Y~~~~~i~H~DlYRL~~~~E~~~l 99 (162)
|.+-||-|+|||+|++-++..--... ..||-..- ..+.-+...+++.++=..+.+.+..+
T Consensus 5 ivlvGd~~VGKTsli~r~~~~~f~~~----~~~Tig~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~~ 67 (166)
T cd04122 5 YIIIGDMGVGKSCLLHQFTEKKFMAD----CPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAV 67 (166)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC----CCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCC
T ss_conf 99999999579999999912988999----9997446889999999999999999989998544425
No 425
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.76 E-value=0.075 Score=31.85 Aligned_cols=84 Identities=14% Similarity=0.175 Sum_probs=51.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH----CCCCCCCCCCCHHHHHHHCCC--CCCEEEEEEECCCCHHHHHCCCHHHH
Q ss_conf 899699998787868899999999760----788853024520201100378--86089998651789777530583675
Q gi|254780824|r 31 RLGDCLTLSGDLGSGKSFLARSIIRFL----MHDDALEVLSPTFTLVQLYDA--SIPVAHFDFYRLSSHQEVVELGFDEI 104 (162)
Q Consensus 31 ~~g~ii~L~GdLGaGKTtfvr~i~~~l----g~~~~~~V~SPTF~l~~~Y~~--~~~i~H~DlYRL~~~~E~~~lg~~e~ 104 (162)
..|.|+.|-|+-|+||||=+--++..+ |-+...=||-=||-|--.=+- =..|..+-+|=..+..|+... +.++
T Consensus 346 ~~gGv~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRiga~eQL~~y~~ilgvpv~~~~~~~~l~~~-l~~l 424 (557)
T PRK12727 346 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDL-LERL 424 (557)
T ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHH-HHHH
T ss_conf 407647874377767311799999999997399818999726640879999999999839757982899999999-9983
Q ss_pred CCCCEEEEECH
Q ss_conf 08978999985
Q gi|254780824|r 105 LNERICIIEWP 115 (162)
Q Consensus 105 ~~~~i~lIEWp 115 (162)
-+..+++|-=+
T Consensus 425 ~~~~lvliDTa 435 (557)
T PRK12727 425 RDYKLVLIDTA 435 (557)
T ss_pred CCCCEEEEECC
T ss_conf 69998999499
No 426
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=93.73 E-value=0.18 Score=29.62 Aligned_cols=58 Identities=19% Similarity=0.251 Sum_probs=34.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC----CCCCEEEEEEECCCCHHHHHCC
Q ss_conf 999878786889999999976078885302452020110037----8860899986517897775305
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD----ASIPVAHFDFYRLSSHQEVVEL 99 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~----~~~~i~H~DlYRL~~~~E~~~l 99 (162)
|.|-||-|+|||+|++-++.+--... -.||- ...|. .+...+.+.+|=..+.+++..+
T Consensus 3 i~llGd~~VGKTsli~r~~~~~f~~~----y~~Ti--~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~~ 64 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYTTGKFPTE----YVPTV--FDNYSATVTVDGKQVNLGLWDTAGQEEYDRL 64 (171)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC----CCCEE--EEEEEEEEEECCEEEEEEEEECCCCCCCCCC
T ss_conf 99999999669999999962999987----58803--4666899999999999999989987102413
No 427
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.72 E-value=0.078 Score=31.77 Aligned_cols=36 Identities=33% Similarity=0.444 Sum_probs=30.2
Q ss_pred HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 998458996999987878688999999997607888
Q gi|254780824|r 26 LASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 26 la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
+.-.+.+|.++.+-|+=|||||||.|.+.-.+..+.
T Consensus 20 vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~ 55 (259)
T COG4559 20 VSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDS 55 (259)
T ss_pred CCEECCCCCEEEEECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 315416872799988898658889998617637888
No 428
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=93.71 E-value=0.21 Score=29.11 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=40.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC----CCCCEEEEEEECCCCHHHHHCCCHHHHC-C-CC
Q ss_conf 9999878786889999999976078885302452020110037----8860899986517897775305836750-8-97
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD----ASIPVAHFDFYRLSSHQEVVELGFDEIL-N-ER 108 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~----~~~~i~H~DlYRL~~~~E~~~lg~~e~~-~-~~ 108 (162)
=|.+-||-|+|||.|++-++.+--... ..||- ...|. -+..-+.+.++=..+.+++..+- ..++ + ++
T Consensus 3 KIvlvGd~~VGKTsli~r~~~~~f~~~----y~~Ti--~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~~~-~~~~~~a~~ 75 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHFVES----YYPTI--ENTFSKIIRYKGQDYHLEIVDTAGQDEYSILP-QKYSIGIHG 75 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC----CCCCC--CCCCCEEEEECCEEEEEEEEECCCCCCCCHHH-HHHHHHCCE
T ss_conf 899999899889999999970978998----58812--44113799999999999999899870100667-999863557
Q ss_pred EEEE
Q ss_conf 8999
Q gi|254780824|r 109 ICII 112 (162)
Q Consensus 109 i~lI 112 (162)
+++|
T Consensus 76 ~ilv 79 (180)
T cd04137 76 YILV 79 (180)
T ss_pred EEEE
T ss_conf 8999
No 429
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=93.70 E-value=0.29 Score=28.34 Aligned_cols=70 Identities=14% Similarity=0.292 Sum_probs=42.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC----CCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCE
Q ss_conf 999878786889999999976078885302452020110037----88608999865178977753058367508--978
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD----ASIPVAHFDFYRLSSHQEVVELGFDEILN--ERI 109 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~----~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i 109 (162)
|.+-||-|+|||++++-++.+--... -.||.. ..|. -+..-+.+.++=..+.+++..+ ...++. +++
T Consensus 4 ivllGd~~VGKTsli~r~~~~~f~~~----y~pTi~--~~~~k~i~~~~~~~~l~iwDtaG~e~~~~~-~~~~~~~a~~~ 76 (163)
T cd04176 4 VVVLGSGGVGKSALTVQFVSGTFIEK----YDPTIE--DFYRKEIEVDSSPSVLEILDTAGTEQFASM-RDLYIKNGQGF 76 (163)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCC--CEEEEEEEECCEEEEEEEEECCCCHHHHHH-HHHHHCCCCEE
T ss_conf 99989999789999999970989975----588523--316799998889999999989885425678-89985578656
Q ss_pred EEE
Q ss_conf 999
Q gi|254780824|r 110 CII 112 (162)
Q Consensus 110 ~lI 112 (162)
+++
T Consensus 77 ilv 79 (163)
T cd04176 77 IVV 79 (163)
T ss_pred EEE
T ss_conf 897
No 430
>PRK03839 putative kinase; Provisional
Probab=93.70 E-value=0.084 Score=31.56 Aligned_cols=83 Identities=18% Similarity=0.263 Sum_probs=46.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH----HHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCCCCE
Q ss_conf 6999987878688999999997607888530245202011----003788608999865178977753058367508978
Q gi|254780824|r 34 DCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLV----QLYDASIPVAHFDFYRLSSHQEVVELGFDEILNERI 109 (162)
Q Consensus 34 ~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~----~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~~~i 109 (162)
.+|++.|-=|+||||+++-+++.+|.+-. +| -.+..- ..|+.. +-+|..++ .+. +++.+.++.
T Consensus 1 M~I~ITGTPGtGKTTva~~La~~lg~~~i-~v--~~la~~~~~~~~~d~~---~~iD~d~l------~~~-~~~~~~~~~ 67 (180)
T PRK03839 1 MIIAITGTPGVGKTTISKLLAEKLGYEYV-NL--RDFALEKGIGEEKDDE---LEIDVDEL------AYF-VEEEFKGKN 67 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCEEE-EH--HHHHHHCCCCCCCCCC---CCCCHHHH------HHH-HHHHHCCCC
T ss_conf 98999789999989999999997698798-79--9999983998676775---04659999------999-998734898
Q ss_pred EEEECHHHHHCCCCCCEEEEEEE
Q ss_conf 99998556320499540999998
Q gi|254780824|r 110 CIIEWPEIGRSLLPKKYIDIHLS 132 (162)
Q Consensus 110 ~lIEWpe~~~~~lp~~~i~I~i~ 132 (162)
++||+- +..++|.+. -|-+-
T Consensus 68 ~ivd~H--~~h~~p~D~-VIVLR 87 (180)
T PRK03839 68 VVLDGH--LSHLMPADL-VIVLR 87 (180)
T ss_pred EEEEEE--CCCCCCCCE-EEEEE
T ss_conf 899864--314636877-99997
No 431
>PRK00698 tmk thymidylate kinase; Validated
Probab=93.65 E-value=0.081 Score=31.67 Aligned_cols=31 Identities=26% Similarity=0.250 Sum_probs=26.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 9969999878786889999999976078885
Q gi|254780824|r 32 LGDCLTLSGDLGSGKSFLARSIIRFLMHDDA 62 (162)
Q Consensus 32 ~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~ 62 (162)
.|..|.+.|-=||||||.++.+.+.|...+.
T Consensus 2 kG~fIviEGiDGsGKsTq~~~L~~~L~~~g~ 32 (204)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLAERLEEQGR 32 (204)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 8319999889999899999999999996799
No 432
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=93.65 E-value=0.26 Score=28.57 Aligned_cols=120 Identities=18% Similarity=0.181 Sum_probs=65.4
Q ss_pred CCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCHHHHHHHHHHHHCCCCC----CCCCCCHHH------HHHHCCCC-C
Q ss_conf 2998999999999998458-9969999878786889999999976078885----302452020------11003788-6
Q gi|254780824|r 13 IPNEKNTICLGRHLASILR-LGDCLTLSGDLGSGKSFLARSIIRFLMHDDA----LEVLSPTFT------LVQLYDAS-I 80 (162)
Q Consensus 13 l~~~~~t~~la~~la~~l~-~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~----~~V~SPTF~------l~~~Y~~~-~ 80 (162)
-++-..-.+.+..++..-. +...++|+|+.|.|||-+.+++++...-... ..++|..|. +.+..-.. +
T Consensus 92 g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk 171 (408)
T COG0593 92 GPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFK 171 (408)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77449999999998756688689579987999978999999999998629986488504899899999998850488888
Q ss_pred CEEEEEEECCCCHH----------HHHCCCHHHHCCCC--EEEEE--CHHHHHCCCCC------CEEEEEEEE
Q ss_conf 08999865178977----------75305836750897--89999--85563204995------409999987
Q gi|254780824|r 81 PVAHFDFYRLSSHQ----------EVVELGFDEILNER--ICIIE--WPEIGRSLLPK------KYIDIHLSQ 133 (162)
Q Consensus 81 ~i~H~DlYRL~~~~----------E~~~lg~~e~~~~~--i~lIE--Wpe~~~~~lp~------~~i~I~i~~ 133 (162)
.-|++|+-=++|.+ |++.+ |....+++ |++.- ||..+....|. -.+.+.|+.
T Consensus 172 ~~y~~dlllIDDiq~l~gk~~~qeefFh~-FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~ 243 (408)
T COG0593 172 EKYSLDLLLIDDIQFLAGKERTQEEFFHT-FNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEP 243 (408)
T ss_pred HHHCCCEEEECHHHHHCCCHHHHHHHHHH-HHHHHHCCCEEEEECCCCCHHHCCCCHHHHHHHHCEEEEEECC
T ss_conf 76426735551386756771579999999-9988850887999707883221103588998986305775279
No 433
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.64 E-value=0.23 Score=28.95 Aligned_cols=30 Identities=33% Similarity=0.519 Sum_probs=24.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 899699998787868899999999760788
Q gi|254780824|r 31 RLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 31 ~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
+|-..++|.|+-|+|||.++|.+++.|-.+
T Consensus 593 rP~GsFlf~GptGvGKTELAKaLAe~Lfg~ 622 (852)
T TIGR03346 593 RPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 974589986788776899999999998558
No 434
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=93.63 E-value=0.23 Score=28.97 Aligned_cols=46 Identities=28% Similarity=0.330 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 8999999999998458996999987878688999999997607888
Q gi|254780824|r 16 EKNTICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 16 ~~~t~~la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
......-+..+...+..+.-++|.|+-|+|||.++-++++.+...+
T Consensus 88 ~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKthLa~Ai~~~l~~~g 133 (254)
T COG1484 88 DKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAG 133 (254)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 6999999999998732588289989999879999999999999839
No 435
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=93.62 E-value=0.26 Score=28.60 Aligned_cols=68 Identities=19% Similarity=0.299 Sum_probs=40.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHH--HHHHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCEEE
Q ss_conf 999878786889999999976078885302452020--11003788608999865178977753058367508--97899
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFT--LVQLYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ERICI 111 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~--l~~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i~l 111 (162)
|++-|+=|+|||++++-++..--..+ ..||-. ..+.-..+ +.+.+|-+.+.+.+..+ ...|+. +++++
T Consensus 2 I~llG~~~~GKTsll~~~~~~~f~~~----~~pTig~~~~~i~~~~---~~l~iwDt~G~e~~~~l-~~~y~~~~~~ii~ 73 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSED----TIPTVGFNMRKVTKGN---VTLKVWDLGGQPRFRSM-WERYCRGVNAIVY 73 (159)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC----CCCCCCEEEEEEEECC---EEEEEEECCCHHHHHHH-HHHHHCCCCEEEE
T ss_conf 89999999869999999975999886----1673250589999899---99999979835877999-9987468636875
No 436
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein; InterPro: IPR005666 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). These proteins are involved in the transmembrane transport of sulphate and thiosulphate.; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane.
Probab=93.62 E-value=0.069 Score=32.07 Aligned_cols=32 Identities=41% Similarity=0.427 Sum_probs=26.0
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 458996999987878688999999997607888
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
.++.|..+.|=|+=|+||||+.|-++ +|-..+
T Consensus 22 ~v~~G~lvaLLGPSGSGKsTLLR~iA-GLe~pd 53 (241)
T TIGR00968 22 EVPTGSLVALLGPSGSGKSTLLRVIA-GLEQPD 53 (241)
T ss_pred EECCCEEEEEECCCCCCHHHHHHHHH-CCCCCC
T ss_conf 74385279854689873789999983-579998
No 437
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=93.61 E-value=0.24 Score=28.84 Aligned_cols=83 Identities=18% Similarity=0.201 Sum_probs=49.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC----CCCCEEEEEEECCCCHHHHHCCCHHHHCC-CCEE
Q ss_conf 999878786889999999976078885302452020110037----88608999865178977753058367508-9789
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD----ASIPVAHFDFYRLSSHQEVVELGFDEILN-ERIC 110 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~----~~~~i~H~DlYRL~~~~E~~~lg~~e~~~-~~i~ 110 (162)
|.+-||-|+|||++++-++.+--... ..||- ...|. -+...++++++=..+.+++..+--..+.. ++++
T Consensus 3 iv~vGd~~VGKTsli~rf~~~~f~~~----y~pTi--~~~~~~~i~v~~~~~~l~i~DTaG~e~~~~~~~~~~~~a~~~i 76 (174)
T cd04135 3 CVVVGDGAVGKTCLLMSYANDAFPEE----YVPTV--FDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 76 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCEE--EEEEEEEEEECCEEEEEEEEECCCCCCCHHHHHHHHCCCCEEE
T ss_conf 99999899859999999962989988----68857--5202279999999999999979764031556599855787678
Q ss_pred EE-------------E-CHHHHHCCCCC
Q ss_conf 99-------------9-85563204995
Q gi|254780824|r 111 II-------------E-WPEIGRSLLPK 124 (162)
Q Consensus 111 lI-------------E-Wpe~~~~~lp~ 124 (162)
++ + |-..+....|.
T Consensus 77 lvydi~~~~Sf~~~~~~w~~~~~~~~~~ 104 (174)
T cd04135 77 ICFSVVNPASFQNVKEEWVPELKEYAPN 104 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9843797788999999999999986849
No 438
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=93.58 E-value=0.23 Score=28.94 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=46.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH---HHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCEE
Q ss_conf 99987878688999999997607888530245202011---003788608999865178977753058367508--9789
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLV---QLYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ERIC 110 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~---~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i~ 110 (162)
|++-|+-|+|||+|++-++.+--..+ ..||-..- ..+.-+..-+.+.++=..+.+.+..+- ..++. ++++
T Consensus 6 iv~iGd~~VGKTsli~r~~~~~f~~~----~~~Tig~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~~~-~~~~~~a~~~i 80 (165)
T cd01868 6 IVLIGDSGVGKSNLLSRFTRNEFNLD----SKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAIT-SAYYRGAVGAL 80 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHH-HHHHHHCCCEE
T ss_conf 99999999789999999972989998----89874478789999999999999999899972126789-98733205148
Q ss_pred EE-------------ECHHHHHCCCCC
Q ss_conf 99-------------985563204995
Q gi|254780824|r 111 II-------------EWPEIGRSLLPK 124 (162)
Q Consensus 111 lI-------------EWpe~~~~~lp~ 124 (162)
++ +|-+.+...-|.
T Consensus 81 lvydit~~~Sf~~i~~w~~~i~~~~~~ 107 (165)
T cd01868 81 LVYDITKKQTFENVERWLKELRDHADS 107 (165)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 986269889999999999999985557
No 439
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=93.58 E-value=0.05 Score=32.93 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=18.0
Q ss_pred ECCCCCCHHHHHHHHHHHHCC
Q ss_conf 878786889999999976078
Q gi|254780824|r 39 SGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 39 ~GdLGaGKTtfvr~i~~~lg~ 59 (162)
.|+=||||||||+++.+.+..
T Consensus 2 iGpaGSGKTT~~~~l~~~l~~ 22 (234)
T pfam03029 2 VGGAGSGKTTFVGALSEILPL 22 (234)
T ss_pred CCCCCCCHHHHHHHHHHHHHH
T ss_conf 898989889999999999997
No 440
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=93.55 E-value=0.22 Score=28.98 Aligned_cols=72 Identities=13% Similarity=0.232 Sum_probs=42.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH---HHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCEE
Q ss_conf 99987878688999999997607888530245202011---003788608999865178977753058367508--9789
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLV---QLYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ERIC 110 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~---~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i~ 110 (162)
|.|-|+-|+|||++++-++.+-=... ..||-..- ....-+..-+++.++-..+.+.+..+ ...|+. ++++
T Consensus 3 ivlvGd~~VGKTsli~r~~~~~f~~~----y~~Tig~d~~~k~~~v~~~~~~l~iwDtaGqe~f~~l-~~~y~r~a~~~i 77 (170)
T cd04108 3 VIVVGDLSVGKTCLINRFCKDVFDKN----YKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCI-ASTYYRGAQAII 77 (170)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC----CCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCC-HHHHHCCCCEEE
T ss_conf 99999899898999999963988997----2563450589999999999999999989999746644-377732787589
Q ss_pred EE
Q ss_conf 99
Q gi|254780824|r 111 II 112 (162)
Q Consensus 111 lI 112 (162)
+|
T Consensus 78 lv 79 (170)
T cd04108 78 IV 79 (170)
T ss_pred EE
T ss_conf 99
No 441
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.54 E-value=0.083 Score=31.60 Aligned_cols=82 Identities=21% Similarity=0.263 Sum_probs=47.1
Q ss_pred HHHHCCCCC--EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHC-------------CCCCCEEEEE-EEC
Q ss_conf 998458996--999987878688999999997607888530245202011003-------------7886089998-651
Q gi|254780824|r 26 LASILRLGD--CLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLY-------------DASIPVAHFD-FYR 89 (162)
Q Consensus 26 la~~l~~g~--ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y-------------~~~~~i~H~D-lYR 89 (162)
|-+.+..+. -+.|+|+=|+||||+++-|++..+..-. .-|.+.+=+..- .+..+|.-+| .-|
T Consensus 43 Lrr~i~~~~~~S~Il~GPPGtGKTTLA~iIA~~t~~~F~--~lsAv~sgvkdlr~ii~~A~~~~~~~g~~tILFIDEIHR 120 (726)
T PRK13341 43 LRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHFS--SLNAVLAGVKDLRAEVDAAKERLERHGKRTILFIDEVHR 120 (726)
T ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE--EEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHH
T ss_conf 999997699982788897999999999999887488679--985620377999999999999987459965999862542
Q ss_pred CCCHHHHHCCCHHHHCCCC-EEEE
Q ss_conf 7897775305836750897-8999
Q gi|254780824|r 90 LSSHQEVVELGFDEILNER-ICII 112 (162)
Q Consensus 90 L~~~~E~~~lg~~e~~~~~-i~lI 112 (162)
++.... +. +-.+.++| |++|
T Consensus 121 fNK~QQ--D~-LLp~vE~G~i~LI 141 (726)
T PRK13341 121 FNKAQQ--DA-LLPWVENGTVTLI 141 (726)
T ss_pred CCHHHH--HH-HHHHHCCCEEEEE
T ss_conf 588789--98-7888606838999
No 442
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=93.54 E-value=0.11 Score=30.90 Aligned_cols=46 Identities=22% Similarity=0.334 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHH---C----CCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 89999999999984---5----8996999987878688999999997607888
Q gi|254780824|r 16 EKNTICLGRHLASI---L----RLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 16 ~~~t~~la~~la~~---l----~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
.++...+++.+-.. | +|-..++|-|+-|+|||.++|.++..|..++
T Consensus 497 d~AV~~v~~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e 549 (786)
T COG0542 497 DEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE 549 (786)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 99999999999998569999998735788667886569999999999965997
No 443
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.52 E-value=0.25 Score=28.70 Aligned_cols=29 Identities=24% Similarity=0.261 Sum_probs=25.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 89969999878786889999999976078
Q gi|254780824|r 31 RLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 31 ~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
.++.+|++.|+.|+||||..-++++.+.-
T Consensus 78 ~~~GlilitGptGSGKtTtl~a~l~~~~~ 106 (264)
T cd01129 78 KPHGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 89988999789999779999999986436
No 444
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.51 E-value=0.089 Score=31.41 Aligned_cols=30 Identities=37% Similarity=0.536 Sum_probs=26.0
Q ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 984589969999878786889999999976
Q gi|254780824|r 27 ASILRLGDCLTLSGDLGSGKSFLARSIIRF 56 (162)
Q Consensus 27 a~~l~~g~ii~L~GdLGaGKTtfvr~i~~~ 56 (162)
.-.+.+|.+++|-|+=|+||||+-|.|+--
T Consensus 25 sl~i~~Gef~tlLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 25 SLDIKKGEFVTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 445448868999899888889999999677
No 445
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=93.51 E-value=0.24 Score=28.79 Aligned_cols=70 Identities=17% Similarity=0.252 Sum_probs=41.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC----CCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCE
Q ss_conf 999878786889999999976078885302452020110037----88608999865178977753058367508--978
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD----ASIPVAHFDFYRLSSHQEVVELGFDEILN--ERI 109 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~----~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i 109 (162)
|.|-||-|+|||++++-++..-=... -.||-. ..|. .+..-+.+.++=..+.+++..+- ..++. +++
T Consensus 3 vvlvGd~~VGKTsli~r~~~~~F~~~----y~pTi~--~~~~~~~~~~~~~v~l~iwDtaG~e~~~~l~-~~~~~~a~~~ 75 (164)
T cd04139 3 VIVVGAGGVGKSALTLQFMYDEFVED----YEPTKA--DSYRKKVVLDGEDVQLNILDTAGQEDYAAIR-DNYHRSGEGF 75 (164)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCC--CEEEEEEEECCEEEEEEEEECCCCHHHHHHH-HHHHHHCCEE
T ss_conf 99999999889999999971989877----488544--1689999999999999999898866248899-9988637688
Q ss_pred EEE
Q ss_conf 999
Q gi|254780824|r 110 CII 112 (162)
Q Consensus 110 ~lI 112 (162)
++|
T Consensus 76 ilv 78 (164)
T cd04139 76 LLV 78 (164)
T ss_pred EEE
T ss_conf 999
No 446
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.51 E-value=0.078 Score=31.77 Aligned_cols=32 Identities=34% Similarity=0.504 Sum_probs=27.8
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.+..|.++.|-|+=|+||||+.|.+++-....
T Consensus 35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt 66 (268)
T COG4608 35 SIKEGETLGLVGESGCGKSTLGRLILGLEEPT 66 (268)
T ss_pred EECCCCEEEEEECCCCCHHHHHHHHHCCCCCC
T ss_conf 97589878999368887787999997283888
No 447
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.50 E-value=0.098 Score=31.17 Aligned_cols=39 Identities=28% Similarity=0.288 Sum_probs=31.2
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 999999845899699998787868899999999760788
Q gi|254780824|r 22 LGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 22 la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
+-..+.-.+.+|+-|.+.|+=|+|||||.|-++..++..
T Consensus 337 l~~~~s~~i~~gdrIaiiG~NG~GKSTLlk~l~g~~~~~ 375 (530)
T COG0488 337 LLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL 375 (530)
T ss_pred EECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 663726776589889998999877899999985213567
No 448
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=93.50 E-value=0.28 Score=28.44 Aligned_cols=71 Identities=14% Similarity=0.196 Sum_probs=45.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHC----CCCCCEEEEEEECCCCHHHHHCCCHHHHCC-CCE
Q ss_conf 999987878688999999997607888530245202011003----788608999865178977753058367508-978
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLY----DASIPVAHFDFYRLSSHQEVVELGFDEILN-ERI 109 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y----~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~-~~i 109 (162)
=|.|-||-|+|||+++..++..--... -.||- ...| .-+...+++.++-..+.+++..+--.-|.+ +++
T Consensus 7 KivlvGd~~VGKTsLi~r~~~~~F~~~----y~pTi--~~~~~~~~~i~~~~v~l~iwDTaGqe~f~~l~~~~y~~~~~~ 80 (182)
T cd04172 7 KIVVVGDSQCGKTALLHVFAKDCFPEN----YVPTV--FENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCC----CCCEE--EEEEEEEEEECCEEEEEEEEECCCCHHCCCCCHHHHCCCCEE
T ss_conf 999999999899999999983999998----68735--322689999999999999996898620122125551278789
Q ss_pred EE
Q ss_conf 99
Q gi|254780824|r 110 CI 111 (162)
Q Consensus 110 ~l 111 (162)
++
T Consensus 81 il 82 (182)
T cd04172 81 LI 82 (182)
T ss_pred EE
T ss_conf 99
No 449
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=93.50 E-value=0.17 Score=29.73 Aligned_cols=41 Identities=15% Similarity=0.306 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 89999999999984589969999878786889999999976
Q gi|254780824|r 16 EKNTICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRF 56 (162)
Q Consensus 16 ~~~t~~la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~ 56 (162)
-..++++-+.+.+......=|++.|+-|+||+.++|.+-..
T Consensus 12 S~~m~~v~~~~~~~A~~~~pVLI~GE~GtGK~~~Ar~IH~~ 52 (325)
T PRK11608 12 ANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (325)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHC
T ss_conf 99999999999999688999898898983799999999965
No 450
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=93.47 E-value=0.15 Score=30.07 Aligned_cols=30 Identities=30% Similarity=0.437 Sum_probs=22.9
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 458996999987878688999999997607
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
.+.+|.|.+|-|+=||||.|++|-+.-...
T Consensus 30 ~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~ 59 (500)
T COG1129 30 TVRPGEVHALLGENGAGKSTLMKILSGVYP 59 (500)
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 783772899966888889999999728615
No 451
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=93.47 E-value=0.28 Score=28.43 Aligned_cols=38 Identities=26% Similarity=0.448 Sum_probs=30.2
Q ss_pred HHHHHHHCC----CCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 999998458----99699998787868899999999760788
Q gi|254780824|r 23 GRHLASILR----LGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 23 a~~la~~l~----~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
+-.+.+.++ .|..|+|.|+=|+|||.++-++++.||-+
T Consensus 36 agiiv~mIk~~K~aGraiLlaGppGTGKTAlA~aiakeLG~~ 77 (395)
T pfam06068 36 AGVIVEMIKEGKIAGRAVLIAGPPGTGKTALAIAISKELGED 77 (395)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 899999997277577389987799988899999999974879
No 452
>TIGR02528 EutP ethanolamine utilization protein, EutP; InterPro: IPR012381 Members of this family function in ethanolamine and propanediol degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose , . More than 10f the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect , . The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella , , . Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 biogenic amine metabolic process.
Probab=93.40 E-value=0.042 Score=33.37 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9999878786889999999976
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRF 56 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~ 56 (162)
-|.|-|..|+|||||++.+-..
T Consensus 2 r~~f~G~~gCGKTTL~q~L~g~ 23 (144)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGE 23 (144)
T ss_pred EEEEEECCCCCHHHHHHHCCCC
T ss_conf 1788715888744354311687
No 453
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.39 E-value=0.087 Score=31.48 Aligned_cols=84 Identities=19% Similarity=0.200 Sum_probs=47.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC------CCCCEEEEEEECCCCHHHHHCCCHHHHCCCC
Q ss_conf 9999878786889999999976078885302452020110037------8860899986517897775305836750897
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD------ASIPVAHFDFYRLSSHQEVVELGFDEILNER 108 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~------~~~~i~H~DlYRL~~~~E~~~lg~~e~~~~~ 108 (162)
.|+..|.=|+||||+++-+. .+|..-. |=. -++.+|. ....=+-+|.=.+. . -++..+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i----~l~-el~~e~~~~~~~de~r~s~~vD~d~~~------~-~le~~~~~~ 68 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVI----ELN-ELAKENGLYTEYDELRKSVIVDVDKLR------K-RLEELLREG 68 (180)
T ss_pred EEEEECCCCCCHHHHHHHHH-HHCCCEE----EHH-HHHHHCCCEECCCCCCCEEEEEHHHHH------H-HHHHHHCCC
T ss_conf 37993799986687999999-8298466----199-999866971143776615886679999------8-888875058
Q ss_pred EEEEECHHHHHCCCCCCEEEEEEEE
Q ss_conf 8999985563204995409999987
Q gi|254780824|r 109 ICIIEWPEIGRSLLPKKYIDIHLSQ 133 (162)
Q Consensus 109 i~lIEWpe~~~~~lp~~~i~I~i~~ 133 (162)
-.+|||- +..++|..++-|-+..
T Consensus 69 ~~Ivd~H--~~hl~~~~dlVvVLR~ 91 (180)
T COG1936 69 SGIVDSH--LSHLLPDCDLVVVLRA 91 (180)
T ss_pred CEEEECH--HHHCCCCCCEEEEECC
T ss_conf 8476126--6621787888999718
No 454
>PRK06217 hypothetical protein; Validated
Probab=93.38 E-value=0.098 Score=31.17 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=24.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 999987878688999999997607888
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
-|+..|-=|||||||.|.+++.++...
T Consensus 3 rI~i~G~sGsGkSTla~~La~~l~~~~ 29 (185)
T PRK06217 3 RIHITGASGSGTTTLGAALAEALDLPH 29 (185)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 799978998878999999999759896
No 455
>PRK13695 putative NTPase; Provisional
Probab=93.38 E-value=0.085 Score=31.52 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=45.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCC---CCCCCC--------HHHHHHHCCCC-CCEEEEEE---ECCC----CHH
Q ss_conf 69999878786889999999976078885---302452--------02011003788-60899986---5178----977
Q gi|254780824|r 34 DCLTLSGDLGSGKSFLARSIIRFLMHDDA---LEVLSP--------TFTLVQLYDAS-IPVAHFDF---YRLS----SHQ 94 (162)
Q Consensus 34 ~ii~L~GdLGaGKTtfvr~i~~~lg~~~~---~~V~SP--------TF~l~~~Y~~~-~~i~H~Dl---YRL~----~~~ 94 (162)
.-|++.|+-|+||||+++-+++.|...+. .=.+.+ -|-++....+. ..+.|.|. ||+. +.+
T Consensus 4 ~kI~iTG~PGvGKTTli~Kv~~~L~~~g~~v~GF~T~Evre~G~R~GF~vv~l~~g~~~~lA~~~~~~~~~VgkY~V~~~ 83 (174)
T PRK13695 4 LRIGITGMPGVGKTTLVLKIAELLAREGYKVGGFITEEVREGGKRIGFKIIDLDTGEEGILARVGAVSRPRVGKYVVNLE 83 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCEEEEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEHH
T ss_conf 29998789998899999999999863696174699525603882850599990588568767537889855456687168
Q ss_pred HHHCCCHHHH---CCCC-EEEE
Q ss_conf 7530583675---0897-8999
Q gi|254780824|r 95 EVVELGFDEI---LNER-ICII 112 (162)
Q Consensus 95 E~~~lg~~e~---~~~~-i~lI 112 (162)
+++.++.+.. +.++ +++|
T Consensus 84 ~~e~~~~~~l~~a~~~~dlivI 105 (174)
T PRK13695 84 DLERIAIPAISRALREADLIII 105 (174)
T ss_pred HHHHHHHHHHHHCCCCCCEEEE
T ss_conf 9789989999835357879999
No 456
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=93.37 E-value=0.079 Score=31.72 Aligned_cols=34 Identities=32% Similarity=0.290 Sum_probs=30.0
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 4589969999878786889999999976078885
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDA 62 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~ 62 (162)
.=+.|.||.|.|-=||||||.+-++-+.|--.+.
T Consensus 15 ~~h~g~vlWlTGLSGsGKsTiA~Al~~~L~~~G~ 48 (187)
T TIGR00455 15 NKHRGVVLWLTGLSGSGKSTIANALEKKLEKKGY 48 (187)
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 2797389851168856357999999999996697
No 457
>PRK08084 DNA replication initiation factor; Provisional
Probab=93.37 E-value=0.26 Score=28.58 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=26.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 8996999987878688999999997607888
Q gi|254780824|r 31 RLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 31 ~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
.++..++|+|+-|+|||-+.+++++...-.+
T Consensus 43 ~~~~~l~l~G~~G~GKTHLLqA~~~~~~~~~ 73 (235)
T PRK08084 43 EHSGYIYLWGREGAGRSHLLHAACAELSQRG 73 (235)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 8987699989999888999999999997079
No 458
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=93.36 E-value=0.26 Score=28.57 Aligned_cols=72 Identities=15% Similarity=0.172 Sum_probs=41.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH---HHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCEE
Q ss_conf 99987878688999999997607888530245202011---003788608999865178977753058367508--9789
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLV---QLYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ERIC 110 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~---~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i~ 110 (162)
|.+-||-|+|||+|++-++..--... ..||-..- ..+.-+..-+++.+|-..+.+++..+ ...++. ++++
T Consensus 8 ivvlGd~~VGKTsli~r~~~~~f~~~----~~~Tig~~~~~k~i~~~~~~v~l~iwDtaG~e~~~~l-~~~~~~~a~~~i 82 (170)
T cd04116 8 VILLGDGGVGKSSLMNRYVTNKFDTQ----LFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSL-RTPFYRGSDCCL 82 (170)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCCC-HHHHEECCCEEE
T ss_conf 99999999789999999973989998----8887607989999999999999999989997243524-176600477339
Q ss_pred EE
Q ss_conf 99
Q gi|254780824|r 111 II 112 (162)
Q Consensus 111 lI 112 (162)
++
T Consensus 83 lv 84 (170)
T cd04116 83 LT 84 (170)
T ss_pred EE
T ss_conf 99
No 459
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=93.36 E-value=0.14 Score=30.20 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=31.8
Q ss_pred HHHHHHHHHC----CCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9999999845----899699998787868899999999760788
Q gi|254780824|r 21 CLGRHLASIL----RLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 21 ~la~~la~~l----~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
+.++.|.+.. +.|.+|+|.|==||||||+++++...|--.
T Consensus 376 eV~~eLrr~~PPr~~~G~tiwlTGLsgsGKsTiA~al~~~L~~~ 419 (568)
T PRK05537 376 EVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMAKLMEM 419 (568)
T ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 89999998568744586499984578887769999999999971
No 460
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.36 E-value=0.073 Score=31.94 Aligned_cols=27 Identities=15% Similarity=0.460 Sum_probs=24.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 999987878688999999997607888
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
||...|+=|||||||.|+|.+-++-..
T Consensus 1 IIaVtGsSGAGtsTv~r~f~~IF~re~ 27 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREG 27 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 989933888847879999999872058
No 461
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=93.36 E-value=0.11 Score=30.84 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=27.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 996999987878688999999997607888
Q gi|254780824|r 32 LGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 32 ~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
.|-||+..|+=||||+|.+|.+++.||+.-
T Consensus 3 ~~iiIAIDGPagsGKSTvak~lA~~Lg~~y 32 (714)
T PRK09518 3 GMIIVAIDGPAGVGKSSVSRALAQYFGYAY 32 (714)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCEE
T ss_conf 988999778986589999999999949918
No 462
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=93.34 E-value=0.28 Score=28.39 Aligned_cols=70 Identities=14% Similarity=0.257 Sum_probs=43.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC----CCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCE
Q ss_conf 999878786889999999976078885302452020110037----88608999865178977753058367508--978
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD----ASIPVAHFDFYRLSSHQEVVELGFDEILN--ERI 109 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~----~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i 109 (162)
|++-||-|+|||++++-++.+-=... ..||-. ..|. .+...+.+.++=..+.+++..+- ..++. +++
T Consensus 4 ivllGd~~VGKTsli~r~~~~~F~~~----y~~Ti~--~~~~~~i~~~~~~~~l~iwDtaG~e~~~~l~-~~~~~~a~~~ 76 (165)
T cd04140 4 VVVFGAGGVGKSSLVLRFVKGTFRES----YIPTIE--DTYRQVISCSKNICTLQITDTTGSHQFPAMQ-RLSISKGHAF 76 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCC--CEEEEEEEECCEEEEEEEEECCCCCCCCCCH-HHHHCCCCEE
T ss_conf 99989999769999999964969998----688454--2055899999999999999899984654232-4450688579
Q ss_pred EEE
Q ss_conf 999
Q gi|254780824|r 110 CII 112 (162)
Q Consensus 110 ~lI 112 (162)
++|
T Consensus 77 ilv 79 (165)
T cd04140 77 ILV 79 (165)
T ss_pred EEE
T ss_conf 998
No 463
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=93.33 E-value=0.26 Score=28.57 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=19.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 8996999987878688999999997607
Q gi|254780824|r 31 RLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 31 ~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
+|-..++|-|+-|+|||.++|.+++.|+
T Consensus 486 rPigsFlf~GPTGVGKTElak~LA~~L~ 513 (758)
T PRK11034 486 KPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9705899978998777999999999986
No 464
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.30 E-value=0.088 Score=31.45 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=24.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 999987878688999999997607888
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
+|.+.|--|+||||.++.+++.+|..-
T Consensus 1 liiv~GvsGsGKSTia~~La~~lg~~~ 27 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPF 27 (150)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 989991899999999999999719956
No 465
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=93.30 E-value=0.33 Score=27.97 Aligned_cols=70 Identities=23% Similarity=0.324 Sum_probs=42.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCC----CCCEEEEEEECCCCHHHHHCCCHHHHCC--CCE
Q ss_conf 9998787868899999999760788853024520201100378----8608999865178977753058367508--978
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDA----SIPVAHFDFYRLSSHQEVVELGFDEILN--ERI 109 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~----~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i 109 (162)
|.+-||-|+|||++++-++..--.. -..||.. ..|.. +..-++++++=..+.+++..+ ...++. +++
T Consensus 5 iv~lGd~~VGKTsli~r~~~~~f~~----~~~pTi~--~~~~~~i~i~~~~~~l~iwDtaGqe~~~~l-~~~~~r~a~~~ 77 (172)
T cd04141 5 IVMLGAGGVGKSAVTMQFISHSFPD----YHDPTIE--DAYKQQARIDNEPALLDILDTAGQAEFTAM-RDQYMRCGEGF 77 (172)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCC----CCCCCCC--CCEEEEEEECCEEEEEEEEECCCCCCCCCC-HHHHHCCCCEE
T ss_conf 9999999977999999997098998----7588422--203699999999999999978885135745-15564278656
Q ss_pred EEE
Q ss_conf 999
Q gi|254780824|r 110 CII 112 (162)
Q Consensus 110 ~lI 112 (162)
++|
T Consensus 78 ilv 80 (172)
T cd04141 78 IIC 80 (172)
T ss_pred EEE
T ss_conf 887
No 466
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.29 E-value=0.19 Score=29.39 Aligned_cols=85 Identities=9% Similarity=0.068 Sum_probs=41.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCC------CCCCHHHHHHHCCCC--CCEEEEEEECCCCHHHHHCCCHHH
Q ss_conf 996999987878688999999997607888530------245202011003788--608999865178977753058367
Q gi|254780824|r 32 LGDCLTLSGDLGSGKSFLARSIIRFLMHDDALE------VLSPTFTLVQLYDAS--IPVAHFDFYRLSSHQEVVELGFDE 103 (162)
Q Consensus 32 ~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~------V~SPTF~l~~~Y~~~--~~i~H~DlYRL~~~~E~~~lg~~e 103 (162)
.+.|++|.|+-|+||||=+--++..+......+ |+--||-+--.-+-. ..+..+.++-..++.|+... +.+
T Consensus 173 k~~vi~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~il~vp~~v~~~~~dl~~~-l~~ 251 (388)
T PRK12723 173 KKRIFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEE-ITQ 251 (388)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHH-HHH
T ss_conf 7628999899887578799999999998626767737999807875889999999999978806985788999999-997
Q ss_pred HCCCCEEEEECHHH
Q ss_conf 50897899998556
Q gi|254780824|r 104 ILNERICIIEWPEI 117 (162)
Q Consensus 104 ~~~~~i~lIEWpe~ 117 (162)
+-+-.+++|-=+-|
T Consensus 252 ~~~~D~IlIDTAGr 265 (388)
T PRK12723 252 SKDFDLVLIDTIGK 265 (388)
T ss_pred HCCCCEEEEECCCC
T ss_conf 24999999958998
No 467
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=93.29 E-value=0.3 Score=28.26 Aligned_cols=60 Identities=20% Similarity=0.195 Sum_probs=34.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHC-CCCCCEEEEEEECCCCHHHHHCC
Q ss_conf 99987878688999999997607888530245202011003-78860899986517897775305
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLY-DASIPVAHFDFYRLSSHQEVVEL 99 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y-~~~~~i~H~DlYRL~~~~E~~~l 99 (162)
|.+-||-|+|||++++-++.+--.+. ..||+.-.... +.+..-+-+.++=..+.++...+
T Consensus 3 iv~vGd~~VGKTsli~r~~~~~F~~~----~~~t~~~~~~~~~~~~~~v~l~i~DtaG~e~~~~~ 63 (166)
T cd01893 3 IVLIGDEGVGKSSLIMSLVSEEFPEN----VPRVLPEITIPADVTPERVPTTIVDTSSRPQDRAN 63 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCCCEEEEEEECCEEEEEEEEECCCCCCCCHH
T ss_conf 99999999899999999984978887----77634568999998890999999989987230245
No 468
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.27 E-value=0.15 Score=30.03 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=32.7
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9999999845899699998787868899999999760788
Q gi|254780824|r 21 CLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 21 ~la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
.|=+.|+.-+.+|.++.+.|+=|+|||||+=-++......
T Consensus 7 ~lD~vLgGGi~~G~it~i~G~pG~GKStl~lq~a~~~~~~ 46 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ 46 (218)
T ss_pred HHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 8999856998788799998999984999999999998636
No 469
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=93.23 E-value=0.26 Score=28.60 Aligned_cols=59 Identities=10% Similarity=0.176 Sum_probs=34.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHH--HHHC-CCCCCEEEEEEECCCCHHHHHC
Q ss_conf 9998787868899999999760788853024520201--1003-7886089998651789777530
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTL--VQLY-DASIPVAHFDFYRLSSHQEVVE 98 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l--~~~Y-~~~~~i~H~DlYRL~~~~E~~~ 98 (162)
|++-|+-|+|||+|+..++..=-.+. .+||-.. .... ..+..-+++.++-..+.+.+..
T Consensus 3 i~vvG~~~vGKTsli~r~~~~~f~~~----~~~tig~d~~~k~v~~~~~~~~l~i~D~~g~e~~~~ 64 (161)
T cd01861 3 LVFLGDQSVGKTSIITRFMYDTFDNQ----YQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRS 64 (161)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHH
T ss_conf 99999799789999999931999998----489756788999999999999999997998531578
No 470
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.22 E-value=0.073 Score=31.92 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=25.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 8996999987878688999999997607888
Q gi|254780824|r 31 RLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 31 ~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
.++.||++.|==||||||-+--+++.+-..+
T Consensus 95 ~kP~Vim~vGlqGsGKTTT~aKLA~~~kk~g 125 (433)
T PRK00771 95 LKPQTILLVGLQGSGKTTTAAKLARYFQKKG 125 (433)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 8985899973788978999999999999779
No 471
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=93.21 E-value=0.088 Score=31.45 Aligned_cols=52 Identities=27% Similarity=0.382 Sum_probs=37.6
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECC
Q ss_conf 99999845899699998787868899999999760788853024520201100378860899986517
Q gi|254780824|r 23 GRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDASIPVAHFDFYRL 90 (162)
Q Consensus 23 a~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~~~~i~H~DlYRL 90 (162)
=+.+.=.+++|.++..-|+=||||+|++|.++-.+-... |+..+-=+|++|-
T Consensus 346 l~gi~F~~~aGe~laIIGPSgSGKStLaR~~vG~W~~~~----------------G~VRLDGadl~qW 397 (556)
T TIGR01842 346 LRGISFAIQAGEALAIIGPSGSGKSTLARILVGIWPPAS----------------GSVRLDGADLKQW 397 (556)
T ss_pred HCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCC----------------CCEEEEHHHHHCC
T ss_conf 278621563774588874786525889878872101356----------------5336403344023
No 472
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.20 E-value=0.13 Score=30.40 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=32.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCHHHHHC
Q ss_conf 969999878786889999999976078885302452020110037886089998651789777530
Q gi|254780824|r 33 GDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDASIPVAHFDFYRLSSHQEVVE 98 (162)
Q Consensus 33 g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~~~~i~H~DlYRL~~~~E~~~ 98 (162)
-..|+|-|+-|+||||=+--++..+-... .+..+.-.|-||+...+++..
T Consensus 241 ~q~IALVGPTGVGKTTTIAKLAArf~~~~----------------KkVALITtDTYRIGAVEQLKT 290 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKK----------------KTVGFITTDHSRIGTVQQLQD 290 (436)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCC----------------CEEEEEECCCCHHHHHHHHHH
T ss_conf 71799989999888999999999986169----------------808999806634769999999
No 473
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=93.20 E-value=0.11 Score=30.78 Aligned_cols=106 Identities=16% Similarity=0.191 Sum_probs=57.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCC---CCCCHHHHHHHC-CC-C-------CCEEEEEEECC--------
Q ss_conf 8996999987878688999999997607888530---245202011003-78-8-------60899986517--------
Q gi|254780824|r 31 RLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALE---VLSPTFTLVQLY-DA-S-------IPVAHFDFYRL-------- 90 (162)
Q Consensus 31 ~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~---V~SPTF~l~~~Y-~~-~-------~~i~H~DlYRL-------- 90 (162)
+-+-||+..|+=||||+|.+|.+++.||+.-..- -.+=||...+.- +. + ..=.++++...
T Consensus 282 ~~~~IIAIDGPAgSGKSTvAK~lA~~L~~~yLDTGamYRAva~~~l~~~i~~~d~~~l~~~l~~~~i~~~~~~~~~~~i~ 361 (512)
T PRK13477 282 KRRPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEALAELLSDLKLELKPSSGSPQRVW 361 (512)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEEEECCCCCCEEEE
T ss_conf 78877998678757878999999998199686244999999999997596976899999998729879831888762899
Q ss_pred -CC---------H------------HHHHC--CCHHHHC-CCCEEEEECHHHHHCCCCCCEEEEEEEECCC
Q ss_conf -89---------7------------77530--5836750-8978999985563204995409999987398
Q gi|254780824|r 91 -SS---------H------------QEVVE--LGFDEIL-NERICIIEWPEIGRSLLPKKYIDIHLSQGKT 136 (162)
Q Consensus 91 -~~---------~------------~E~~~--lg~~e~~-~~~i~lIEWpe~~~~~lp~~~i~I~i~~~~~ 136 (162)
++ + .++.+ ..+...+ .++-+++|=-|...-.+|+..+++.++.+.+
T Consensus 362 lng~dvt~~IRs~eVs~~vS~vA~~p~VR~~l~~~QR~~a~~~g~V~eGRDIGTVVfPdA~lK~fLtAs~e 432 (512)
T PRK13477 362 INGEDVTEAIRSPEVTSSVSAIAAQPCVRQALVKQQQRIGEKGGLVAEGRDIGTHVFPDAELKIFLTASVE 432 (512)
T ss_pred ECCEEHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCEECCCCCEEEEEECCHH
T ss_conf 88857066554478899999983979899999999999846599999799876667789996699989999
No 474
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=93.20 E-value=0.29 Score=28.28 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=27.2
Q ss_pred HHHHHHHHHHCCCCC---EEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 999999998458996---9999878786889999999976078
Q gi|254780824|r 20 ICLGRHLASILRLGD---CLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 20 ~~la~~la~~l~~g~---ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
..+++.+++ .+|. .++++|+=|+|||.+.+++++....
T Consensus 20 ~~~~~~i~~--~~~~~~npl~i~G~~G~GKTHLLqA~~~~~~~ 60 (219)
T pfam00308 20 HAAALAVAE--APGKAYNPLFIYGGVGLGKTHLLHAIGNYALR 60 (219)
T ss_pred HHHHHHHHH--CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 999999996--75876782699889999888999999999998
No 475
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.19 E-value=0.2 Score=29.35 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=22.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9699998787868899999999760
Q gi|254780824|r 33 GDCLTLSGDLGSGKSFLARSIIRFL 57 (162)
Q Consensus 33 g~ii~L~GdLGaGKTtfvr~i~~~l 57 (162)
|.+|.|.|+=|+||||+++.+++..
T Consensus 1 G~livl~GpsG~GK~tl~~~l~~~~ 25 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 9399998999889999999999768
No 476
>pfam05673 DUF815 Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function.
Probab=93.17 E-value=0.29 Score=28.32 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=26.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 89969999878786889999999976078885
Q gi|254780824|r 31 RLGDCLTLSGDLGSGKSFLARSIIRFLMHDDA 62 (162)
Q Consensus 31 ~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~ 62 (162)
.|..-++|+|+=|+||+++||+++..+..++.
T Consensus 51 ~pAnnvLLwG~RGtGKSSlVKall~~~~~~gL 82 (248)
T pfam05673 51 LPANNVLLWGARGTGKSSLVKALLNEYADQGL 82 (248)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 98613676768989888999999998631495
No 477
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.14 E-value=0.18 Score=29.57 Aligned_cols=37 Identities=30% Similarity=0.412 Sum_probs=28.2
Q ss_pred HHHHHHHCCCC---CEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 99999845899---69999878786889999999976078
Q gi|254780824|r 23 GRHLASILRLG---DCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 23 a~~la~~l~~g---~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
-+.|.+.+..| ...+|.|+-|.|||||++.|++.+-.
T Consensus 32 ~~~L~~a~~~gRl~HA~Lf~GP~GiGKaTlA~~~A~~Ll~ 71 (352)
T PRK09112 32 RAFLAQAYREGRLHHALLFEGPEGIGKATLAFHLANHILS 71 (352)
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 9999999984996524653589980899999999999866
No 478
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=93.11 E-value=0.28 Score=28.43 Aligned_cols=84 Identities=18% Similarity=0.269 Sum_probs=47.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHC----CCCCCEEEEEEECCCCHHHHHCCCHHHHCC-CCE
Q ss_conf 999987878688999999997607888530245202011003----788608999865178977753058367508-978
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLY----DASIPVAHFDFYRLSSHQEVVELGFDEILN-ERI 109 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y----~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~-~~i 109 (162)
=|++-||-|+|||++++-++.+--.. -..||- ...| .-+..-+.+.+|=..+.+++..+--..+.. +++
T Consensus 3 Ki~liGd~~VGKTsli~r~~~~~F~~----~y~pTi--~~~~~~~i~~~~~~v~l~iwDtaG~e~~~~~~~~~~~~a~~~ 76 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFSKDQFPE----VYVPTV--FENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 76 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC----CCCCCE--EEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHHHHCCCCEE
T ss_conf 99999989966999999997098999----847843--689999999999999999997776613232404431488789
Q ss_pred EEE-------------E-CHHHHHCCCCC
Q ss_conf 999-------------9-85563204995
Q gi|254780824|r 110 CII-------------E-WPEIGRSLLPK 124 (162)
Q Consensus 110 ~lI-------------E-Wpe~~~~~lp~ 124 (162)
+++ + |-+.+....|.
T Consensus 77 ilvydi~~~~Sf~~~~~~w~~~i~~~~~~ 105 (175)
T cd01870 77 LMCFSIDSPDSLENIPEKWTPEVKHFCPN 105 (175)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99986598799999999999999972989
No 479
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.10 E-value=0.1 Score=31.07 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=28.1
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 84589969999878786889999999976078
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
.-+.+|.++.+.|.-|+|||+|+..++..+..
T Consensus 8 gG~~~G~L~vi~a~~g~GKS~~~~~la~~~a~ 39 (242)
T cd00984 8 GGLQPGDLIIIAARPSMGKTAFALNIAENIAK 39 (242)
T ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 69999818999968999999999999999999
No 480
>PRK12377 putative replication protein; Provisional
Probab=93.09 E-value=0.34 Score=27.86 Aligned_cols=51 Identities=24% Similarity=0.341 Sum_probs=38.2
Q ss_pred ECCCHHHHHHH--HHHHHHH-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 82998999999--9999984-589969999878786889999999976078885
Q gi|254780824|r 12 PIPNEKNTICL--GRHLASI-LRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDA 62 (162)
Q Consensus 12 ~l~~~~~t~~l--a~~la~~-l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~ 62 (162)
...++..-.++ |+.++.. +..+.-+.|.|+-|+|||.++-+++..+.-.+.
T Consensus 77 ~~~~~~~~~a~~~a~~~~~~F~~~~~NlIf~G~pGtGKTHLA~AIg~~a~~~G~ 130 (248)
T PRK12377 77 QVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGR 130 (248)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 457878999999999999987318860899899998788999999999998799
No 481
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=93.07 E-value=0.3 Score=28.23 Aligned_cols=60 Identities=15% Similarity=0.184 Sum_probs=33.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH---HHCCCCCCEEEEEEECCCCHHHHHCC
Q ss_conf 99987878688999999997607888530245202011---00378860899986517897775305
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLV---QLYDASIPVAHFDFYRLSSHQEVVEL 99 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~---~~Y~~~~~i~H~DlYRL~~~~E~~~l 99 (162)
|.|-||-|+|||+|++-++.+--... ..||-..- ..+.-+..-+.+.++=..+.+.+..+
T Consensus 9 IvlvGd~~VGKTSli~r~~~~~F~~~----~~~Tig~d~~~k~v~i~~~~v~l~iwDtaGqe~~~~l 71 (199)
T cd04110 9 LLIIGDSGVGKSSLLLRFADNTFSGS----YITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTI 71 (199)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC----CCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCC
T ss_conf 99999799888999999950999998----6897555878999999999999999989998123535
No 482
>PRK05642 DNA replication initiation factor; Validated
Probab=93.07 E-value=0.32 Score=28.04 Aligned_cols=44 Identities=16% Similarity=0.118 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHCC--CCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 999999999998458--99699998787868899999999760788
Q gi|254780824|r 17 KNTICLGRHLASILR--LGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 17 ~~t~~la~~la~~l~--~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
++....++.++..-. +...++++|+-|+|||-+.++++....-.
T Consensus 27 ~~a~~~~~~l~~~~~~~~~~~l~i~G~~G~GKTHLL~A~~~~~~~~ 72 (234)
T PRK05642 27 AAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQR 72 (234)
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 9999999998760678778838998899998899999999999807
No 483
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.06 E-value=0.14 Score=30.19 Aligned_cols=30 Identities=37% Similarity=0.447 Sum_probs=27.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 899699998787868899999999760788
Q gi|254780824|r 31 RLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 31 ~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
..|.-|++.|+-|+|||.++=|+++.||-+
T Consensus 63 ~aGrgiLi~GppgTGKTAlA~gIa~eLG~d 92 (450)
T COG1224 63 MAGRGILIVGPPGTGKTALAMGIARELGED 92 (450)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 666179997899976889999999985899
No 484
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=93.06 E-value=0.12 Score=30.74 Aligned_cols=32 Identities=31% Similarity=0.316 Sum_probs=26.7
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 84589969999878786889999999976078
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
-.+..|.++.|-|+=|+||||+-|-|+--...
T Consensus 24 l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~p 55 (338)
T COG3839 24 LDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP 55 (338)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 89747979999899988889999999688778
No 485
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.05 E-value=0.12 Score=30.67 Aligned_cols=37 Identities=35% Similarity=0.405 Sum_probs=28.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 69999878786889999999976078885302452020
Q gi|254780824|r 34 DCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFT 71 (162)
Q Consensus 34 ~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~ 71 (162)
.-|+|-|+-|+|||-++|-+++-|++.-. -+---|||
T Consensus 110 sNILliGPTG~GKTlla~tLAk~l~vPF~-iaDAT~lT 146 (411)
T PRK05342 110 SNILLIGPTGSGKTLLAQTLARILNVPFA-IADATTLT 146 (411)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEE-EEEECEEC
T ss_conf 53899899997788999999998699989-98612001
No 486
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=93.04 E-value=0.096 Score=31.21 Aligned_cols=27 Identities=37% Similarity=0.507 Sum_probs=23.5
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 589969999878786889999999976
Q gi|254780824|r 30 LRLGDCLTLSGDLGSGKSFLARSIIRF 56 (162)
Q Consensus 30 l~~g~ii~L~GdLGaGKTtfvr~i~~~ 56 (162)
++.|+++++.|.=|+|||||++-+..-
T Consensus 346 ikrGelvFliG~NGsGKST~~~LLtGL 372 (546)
T COG4615 346 IKRGELVFLIGGNGSGKSTLAMLLTGL 372 (546)
T ss_pred EECCCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 733738999888996388999999706
No 487
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=93.04 E-value=0.29 Score=28.31 Aligned_cols=70 Identities=16% Similarity=0.300 Sum_probs=41.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC----CCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCE
Q ss_conf 999878786889999999976078885302452020110037----88608999865178977753058367508--978
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD----ASIPVAHFDFYRLSSHQEVVELGFDEILN--ERI 109 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~----~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i 109 (162)
|++-||-|+|||++++-++.+--... -.||-. ..|. -+..-+++.++=..+.+++..+ ...++. +++
T Consensus 4 IvllGd~~VGKTsli~r~~~~~f~~~----y~pTi~--~~~~k~i~~~~~~~~l~iwDtaG~e~~~~l-~~~y~~~a~~~ 76 (164)
T cd04175 4 LVVLGSGGVGKSALTVQFVQGIFVEK----YDPTIE--DSYRKQVEVDGQQCMLEILDTAGTEQFTAM-RDLYMKNGQGF 76 (164)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCEE--EEEEEEEEECCEEEEEEECCCCCCHHHHHH-HHHHHCCCCEE
T ss_conf 99989999759999999970928865----688404--689999999999999985147754324567-88873578689
Q ss_pred EEE
Q ss_conf 999
Q gi|254780824|r 110 CII 112 (162)
Q Consensus 110 ~lI 112 (162)
+++
T Consensus 77 ilv 79 (164)
T cd04175 77 VLV 79 (164)
T ss_pred EEE
T ss_conf 999
No 488
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=93.03 E-value=0.14 Score=30.22 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=26.9
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 5899699998787868899999999760788
Q gi|254780824|r 30 LRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 30 l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
|....+++..|+-||||||.-=+|+-+|=..
T Consensus 27 l~~~gLFlI~G~TGAGKSTIlDAItfALYG~ 57 (1047)
T PRK10246 27 FASNGLFAITGPTGAGKTTLLDAICLALYHE 57 (1047)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 5668878888999998899999999995899
No 489
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=93.02 E-value=0.11 Score=30.85 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=28.5
Q ss_pred HHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 99984589969999878786889999999976078
Q gi|254780824|r 25 HLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 25 ~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
.+.-.+++|..+.+.|.=|+||||+.|-+..-+-.
T Consensus 491 ~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 491 DLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 50277679988999879999889999998367888
No 490
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=93.02 E-value=0.36 Score=27.77 Aligned_cols=58 Identities=19% Similarity=0.295 Sum_probs=37.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC-----CCCCEEEEEEECCCCHHHHHCC
Q ss_conf 999878786889999999976078885302452020110037-----8860899986517897775305
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD-----ASIPVAHFDFYRLSSHQEVVEL 99 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~-----~~~~i~H~DlYRL~~~~E~~~l 99 (162)
|.|-||=|+|||++++-++.+--... ..||- ...|. .+...+++.++=..+.+++..+
T Consensus 3 ivlvGd~~VGKTsli~r~~~~~F~~~----~~pTi--~~~~~~~~~~~~~~~v~l~iwDtaG~e~~~~l 65 (187)
T cd04132 3 IVVVGDGGCGKTCLLIVYSQGKFPEE----YVPTV--FENYVTNIQGPNGKIIELALWDTAGQEEYDRL 65 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCE--EEEEEEEEEEECCEEEEEEEEECCCCCCCCCC
T ss_conf 99999499769999999963989997----58966--47999999954998999999969997110534
No 491
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=93.01 E-value=0.16 Score=29.81 Aligned_cols=37 Identities=22% Similarity=0.234 Sum_probs=30.3
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9999999845899699998787868899999999760
Q gi|254780824|r 21 CLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFL 57 (162)
Q Consensus 21 ~la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~l 57 (162)
.|=+.|+.-+.+|.++.+.|+=|+|||+|+=-++.+.
T Consensus 11 ~lD~~LgGGi~~G~itei~G~pG~GKTtl~lq~a~~~ 47 (224)
T PRK09361 11 SLDELLGGGIERGTITQIYGPPGSGKTNICIQLAVEA 47 (224)
T ss_pred HHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998626998888799998999985999999999999
No 492
>TIGR01188 drrA daunorubicin resistance ABC transporter, ATP-binding protein; InterPro: IPR005894 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains the daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. In other words it functions as an ATP dependent antiporter. .
Probab=93.00 E-value=0.069 Score=32.09 Aligned_cols=63 Identities=21% Similarity=0.300 Sum_probs=44.7
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC------C-CCCC-----------HHHHHHHCC--CC-CC-EEEEEE
Q ss_conf 5899699998787868899999999760788853------0-2452-----------020110037--88-60-899986
Q gi|254780824|r 30 LRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDAL------E-VLSP-----------TFTLVQLYD--AS-IP-VAHFDF 87 (162)
Q Consensus 30 l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~------~-V~SP-----------TF~l~~~Y~--~~-~~-i~H~Dl 87 (162)
.+.|.|+.+=|+=||||||.+|-+..=|-.+.-+ + |+-| ||.-...|+ +. -+ ..|-+|
T Consensus 18 V~~G~vfGfLGPNGAGKTTti~mLtTll~P~sG~A~V~GYDvvreP~kl~VRr~IG~v~Q~~s~D~~LTg~ENl~m~g~L 97 (343)
T TIGR01188 18 VREGEVFGFLGPNGAGKTTTIRMLTTLLKPTSGTARVAGYDVVREPRKLKVRRRIGIVPQYASVDEDLTGRENLVMMGRL 97 (343)
T ss_pred ECCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEEEEEECCCCHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 30624899768799851335634102557998768998321023630403211320446855556457747544453333
Q ss_pred ECCCC
Q ss_conf 51789
Q gi|254780824|r 88 YRLSS 92 (162)
Q Consensus 88 YRL~~ 92 (162)
|=+..
T Consensus 98 yGlp~ 102 (343)
T TIGR01188 98 YGLPK 102 (343)
T ss_pred CCCCH
T ss_conf 48968
No 493
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=93.00 E-value=0.3 Score=28.24 Aligned_cols=83 Identities=14% Similarity=0.175 Sum_probs=43.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH---HHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCEE
Q ss_conf 99987878688999999997607888530245202011---003788608999865178977753058367508--9789
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLV---QLYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ERIC 110 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~---~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i~ 110 (162)
|++-|+-|+|||++++-++..--... ..||-..- ....-+..-+.+.++=..+.+.+..+ ...++. ++++
T Consensus 6 ivlvGd~~vGKTsli~r~~~~~f~~~----~~~Tig~~~~~k~v~~~~~~i~l~iwDt~G~e~~~~~-~~~y~~~a~~~i 80 (167)
T cd01867 6 LLLIGDSGVGKSCLLLRFSEDSFNPS----FISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTI-TTAYYRGAMGII 80 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCHHHH-HHHHHHHCCEEE
T ss_conf 99999999788999999960999998----6898646889999999999999999989997001166-799856505889
Q ss_pred EE-------------ECHHHHHCCCC
Q ss_conf 99-------------98556320499
Q gi|254780824|r 111 II-------------EWPEIGRSLLP 123 (162)
Q Consensus 111 lI-------------EWpe~~~~~lp 123 (162)
+| +|-+.+....+
T Consensus 81 lvfdit~~~Sf~~~~~w~~~i~~~~~ 106 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHAS 106 (167)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 95568987999999999999998669
No 494
>PTZ00132 GTP-binding nuclear protein; Provisional
Probab=92.99 E-value=0.34 Score=27.94 Aligned_cols=74 Identities=16% Similarity=0.175 Sum_probs=42.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH-H--HCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CC
Q ss_conf 6999987878688999999997607888530245202011-0--03788608999865178977753058367508--97
Q gi|254780824|r 34 DCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLV-Q--LYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ER 108 (162)
Q Consensus 34 ~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~-~--~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~ 108 (162)
--|.+-||-|+|||+|++-++.+--... -.||-..- + .+..+..-+.+.+|-..+.+.+..+- ..|+. ++
T Consensus 7 ~KIvllGd~~VGKTsLi~r~~~~~F~~~----y~pTig~d~~~~~~~~~~~~i~l~IwDTaGqe~f~sl~-~~yyr~a~~ 81 (209)
T PTZ00132 7 FKLILVGDGGVGKTTFVKRHLTGEFEKK----YIATLGVEVHPLKFYTNRGKICFNVWDTAGQEKFGGLR-DGYYIKGQC 81 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCC-CHHHCCCCE
T ss_conf 8999999999678999999971996998----77760279899999999999999999899974455665-144248988
Q ss_pred EEEE
Q ss_conf 8999
Q gi|254780824|r 109 ICII 112 (162)
Q Consensus 109 i~lI 112 (162)
+++|
T Consensus 82 ~ilV 85 (209)
T PTZ00132 82 AIIM 85 (209)
T ss_pred EEEE
T ss_conf 9998
No 495
>pfam01202 SKI Shikimate kinase.
Probab=92.99 E-value=0.074 Score=31.91 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=18.6
Q ss_pred CCCCHHHHHHHHHHHHCCCC
Q ss_conf 78688999999997607888
Q gi|254780824|r 42 LGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 42 LGaGKTtfvr~i~~~lg~~~ 61 (162)
|||||||+.|.+++.||..-
T Consensus 1 mGsGKstigk~LA~~L~~~f 20 (158)
T pfam01202 1 MGAGKTTIGRLLAKALGLPF 20 (158)
T ss_pred CCCCHHHHHHHHHHHHCCCE
T ss_conf 98977999999999969997
No 496
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=92.99 E-value=0.29 Score=28.29 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=26.5
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 58996999987878688999999997607888
Q gi|254780824|r 30 LRLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 30 l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
-....+|.+.|.=||||.||+-.+++.+--.+
T Consensus 46 ~g~a~~iGiTG~pG~GKStli~~l~~~~~~~g 77 (325)
T PRK09435 46 TGNALRIGITGVPGVGKSTFIEALGMHLIEQG 77 (325)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 79825997427999868899999999999679
No 497
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=92.97 E-value=0.16 Score=29.87 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=26.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 996999987878688999999997607888
Q gi|254780824|r 32 LGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 32 ~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
|-..++|.|+=|+|||.++|.+++.+....
T Consensus 2 p~~~~l~~GPsGvGKT~lAk~la~~l~~~~ 31 (168)
T pfam07724 2 PIGSFLFLGPTGVGKTELAKALAELLFGDE 31 (168)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 837999889899899999999999967985
No 498
>CHL00176 ftsH cell division protein; Validated
Probab=92.96 E-value=0.074 Score=31.90 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=30.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 89969999878786889999999976078885302452020
Q gi|254780824|r 31 RLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFT 71 (162)
Q Consensus 31 ~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~ 71 (162)
+.+.=++|.|+=|+|||-++|+++..-|+.-. -++-+.|.
T Consensus 208 k~PkGvLL~GpPGTGKTlLAkAvAgEa~vpF~-~~sgs~F~ 247 (631)
T CHL00176 208 KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFF-SISGSEFV 247 (631)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCEE-EEEHHHHH
T ss_conf 68965898898998788999998565588469-98837855
No 499
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=92.95 E-value=0.27 Score=28.47 Aligned_cols=72 Identities=22% Similarity=0.305 Sum_probs=41.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC----CCCCEEEEEEECCCCHHHHHCCCHHHHCC--C
Q ss_conf 69999878786889999999976078885302452020110037----88608999865178977753058367508--9
Q gi|254780824|r 34 DCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD----ASIPVAHFDFYRLSSHQEVVELGFDEILN--E 107 (162)
Q Consensus 34 ~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~----~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~ 107 (162)
-=|.+-||-|+|||++++-++.+--..+ ..||-. ..|. -+...+.+.++-..+.+++..+ ...++. +
T Consensus 3 ~Kiv~lGd~~VGKTsli~r~~~~~f~~~----y~~Ti~--~~~~k~~~~~~~~~~l~iwDtaG~e~~~~~-~~~~~~~a~ 75 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTD----YDPTIE--DSYTKQCEIDGQWAILDILDTAGQEEFSAM-REQYMRTGE 75 (164)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCC----CCCCEE--EEEEEEEEECCEEEEEEEEECCCCCCCCHH-HHHHHCCCC
T ss_conf 7999999999788999999980989875----678413--589999999999999999989886031256-798734678
Q ss_pred CEEEE
Q ss_conf 78999
Q gi|254780824|r 108 RICII 112 (162)
Q Consensus 108 ~i~lI 112 (162)
+++++
T Consensus 76 ~~ilv 80 (164)
T cd04145 76 GFLLV 80 (164)
T ss_pred CCEEE
T ss_conf 74689
No 500
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670 This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=92.94 E-value=0.11 Score=30.96 Aligned_cols=28 Identities=36% Similarity=0.419 Sum_probs=24.1
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 4589969999878786889999999976
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRF 56 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~ 56 (162)
-++.+.|.+|-|+=|.||+||.|+|=+=
T Consensus 23 ~I~~n~vTAlIGPSGCGKSTlLR~lNRM 50 (248)
T TIGR00972 23 DIPKNQVTALIGPSGCGKSTLLRSLNRM 50 (248)
T ss_pred EECCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 0037705898778898678999998877
Done!