HHsearch alignment for GI: 254780824 and conserved domain: pfam00071
>pfam00071 Ras Ras family. Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices.
Probab=94.52 E-value=0.1 Score=31.03 Aligned_cols=84 Identities=17% Similarity=0.224 Sum_probs=47.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHH---HHHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCEE
Q ss_conf 9998787868899999999760788853024520201---1003788608999865178977753058367508--9789
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTL---VQLYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ERIC 110 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l---~~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i~ 110 (162)
T Consensus 2 i~vvG~~~vGKTsli~r~~~~~f~~~----~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~e~~~~~-~~~~~~~ad~~i 76 (162)
T pfam00071 2 LVLVGDGGVGKSSLLIRFTQNKFPEE----YIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQERFRAL-RPLYYRGAQGFL 76 (162)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHH-HHHHHCCCCCCE
T ss_conf 89999799779999999961999987----4774135567899999999999999978987204678-899862576550
Q ss_pred EE-------------ECHHHHHCCCCC
Q ss_conf 99-------------985563204995
Q gi|254780824|r 111 II-------------EWPEIGRSLLPK 124 (162)
Q Consensus 111 lI-------------EWpe~~~~~lp~ 124 (162)
T Consensus 77 ivfd~~~~~S~~~i~~~~~~i~~~~~~ 103 (162)
T pfam00071 77 LVYDITSRDSFENVKKWLEEILRHADD 103 (162)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 423489889999999999999985798