HHsearch alignment for GI: 254780824 and conserved domain: pfam00158
>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=94.54 E-value=0.085 Score=31.54 Aligned_cols=41 Identities=17% Similarity=0.282 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 89999999999984589969999878786889999999976
Q gi|254780824|r 16 EKNTICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRF 56 (162)
Q Consensus 16 ~~~t~~la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~ 56 (162)
T Consensus 5 S~~m~~l~~~i~~~a~~~~pVLI~GE~GtGK~~lAr~IH~~ 45 (168)
T pfam00158 5 SPAMQEVLELAKRVAPTDATVLITGESGTGKELFARAIHQL 45 (168)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 99999999999999588998899899988889999999985