HHsearch alignment for GI: 254780824 and conserved domain: pfam00158

>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=94.54  E-value=0.085  Score=31.54  Aligned_cols=41  Identities=17%  Similarity=0.282  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             89999999999984589969999878786889999999976
Q gi|254780824|r   16 EKNTICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRF   56 (162)
Q Consensus        16 ~~~t~~la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~   56 (162)
T Consensus         5 S~~m~~l~~~i~~~a~~~~pVLI~GE~GtGK~~lAr~IH~~   45 (168)
T pfam00158         5 SPAMQEVLELAKRVAPTDATVLITGESGTGKELFARAIHQL   45 (168)
T ss_pred             CHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf             99999999999999588998899899988889999999985