HHsearch alignment for GI: 254780824 and conserved domain: pfam06745
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=95.07 E-value=0.028 Score=34.41 Aligned_cols=34 Identities=21% Similarity=0.387 Sum_probs=27.1
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 9999998458996999987878688999999997
Q gi|254780824|r 22 LGRHLASILRLGDCLTLSGDLGSGKSFLARSIIR 55 (162)
Q Consensus 22 la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~ 55 (162)
T Consensus 8 LD~~l~GGi~~gs~~LI~G~pGsGKT~la~qfl~ 41 (231)
T pfam06745 8 LDEILKGGIPEGRVVLITGGPGTGKTIFGLQFLY 41 (231)
T ss_pred HHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 8863169982996999985897259999999999