HHsearch alignment for GI: 254780824 and conserved domain: pfam07693
>pfam07693 KAP_NTPase KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.
Probab=97.37 E-value=0.00058 Score=44.63 Aligned_cols=62 Identities=24% Similarity=0.297 Sum_probs=45.6
Q ss_pred HHHHHHHHHC-----CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCHHH
Q ss_conf 9999999845-----89969999878786889999999976078885302452020110037886089998651789777
Q gi|254780824|r 21 CLGRHLASIL-----RLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDASIPVAHFDFYRLSSHQE 95 (162)
Q Consensus 21 ~la~~la~~l-----~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~~~~i~H~DlYRL~~~~E 95 (162)
T Consensus 3 ~~a~~la~~i~~~~~~~~~vIgl~G~WGsGKTs~l~~~~~~L~~~~----------------~~~~~v~fn~W~~~~~d~ 66 (301)
T pfam07693 3 KYAENLAKLLVEPSLAPGFVIGLYGAWGSGKTSFLNLLEDELKEFP----------------EEFHIVYFDPWLFSGQDD 66 (301)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC----------------CCCEEEEEECCCCCCCCC
T ss_conf 7899999999577789997999989899999999999999986136----------------882699981230479678
Q ss_pred HHC
Q ss_conf 530
Q gi|254780824|r 96 VVE 98 (162)
Q Consensus 96 ~~~ 98 (162)
T Consensus 67 ~~~ 69 (301)
T pfam07693 67 AVA 69 (301)
T ss_pred HHH
T ss_conf 999