RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780824|ref|YP_003065237.1| hypothetical protein
CLIBASIA_03585 [Candidatus Liberibacter asiaticus str. psy62]
(162 letters)
>gnl|CDD|129254 TIGR00150, HI0065_YjeE, ATPase, YjeE family. Members of this
family have a conserved nucleotide-binding motif
GXXGXGKT and a nucleotide-binding fold. Member protein
YjeE of Haemophilus influenzae (HI0065) was shown to
have ATPase activity.
Length = 133
Score = 113 bits (284), Expect = 3e-26
Identities = 47/135 (34%), Positives = 74/135 (54%), Gaps = 4/135 (2%)
Query: 12 PIPNEKNTICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFT 71
P+EK G+ A L G + L GDLG+GK+ L + +++ L V SPTFT
Sbjct: 1 ANPDEKAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ--GNVTSPTFT 58
Query: 72 LVQLYD-ASIPVAHFDFYRLSSHQEVVELGFDEIL-NERICIIEWPEIGRSLLPKKYIDI 129
LV Y+ ++ V HFD YRL+ +E+ +G ++ + IC++EWPE G +LP + I
Sbjct: 59 LVNEYNEGNLMVYHFDLYRLADPEELELMGLEDYFEGDGICLVEWPEEGLEILPDYDLQI 118
Query: 130 HLSQGKTGRKATISA 144
+ GR+ ++A
Sbjct: 119 KIDYVGDGREIELTA 133
>gnl|CDD|182615 PRK10646, PRK10646, ADP-binding protein; Provisional.
Length = 153
Score = 106 bits (265), Expect = 4e-24
Identities = 54/137 (39%), Positives = 81/137 (59%), Gaps = 4/137 (2%)
Query: 10 VIPIPNEKNTICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPT 69
VIP+P+E+ T+ LG +A + L GDLG+GK+ +R ++ L H V SPT
Sbjct: 5 VIPLPDEQATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGHQG--NVKSPT 62
Query: 70 FTLVQLYDAS-IPVAHFDFYRLSSHQEVVELGF-DEILNERICIIEWPEIGRSLLPKKYI 127
+TLV+ Y + V HFD YRL+ +E+ +G D N+ IC++EWP+ G +LP +
Sbjct: 63 YTLVEPYTLDNLMVYHFDLYRLADPEELEFMGIRDYFANDAICLVEWPQQGAGVLPDPDV 122
Query: 128 DIHLSQGKTGRKATISA 144
+IHL GR+A +SA
Sbjct: 123 EIHLDYQAQGREARVSA 139
>gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 32.7 bits (74), Expect = 0.043
Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 1/93 (1%)
Query: 33 GDCLTLSGDLGSGKSFLARSIIRFLM-HDDALEVLSPTFTLVQLYDASIPVAHFDFYRLS 91
G+ + + G GSGK+ LAR++ R L + + L ++ D + +
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASG 61
Query: 92 SHQEVVELGFDEILNERICIIEWPEIGRSLLPK 124
S + + L + ++ EI L +
Sbjct: 62 SGELRLRLALALARKLKPDVLILDEITSLLDAE 94
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 31.4 bits (71), Expect = 0.12
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 11 IPIPNEKNTICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFL 57
I E+ I R+L+ L+ G+ L + G+ GSGKS A +++R L
Sbjct: 20 IAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLL 66
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein
PhnL. Members of this family are the PhnL protein of
C-P lyase systems for utilization of phosphonates.
These systems resemble phosphonatase-based systems in
having a three component ABC transporter, where
TIGR01097 is the permease, TIGR01098 is the
phosphonates binding protein, and TIGR02315 is the
ATP-binding cassette (ABC) protein. They differ,
however, in having, typically, ten or more additional
genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a
transporter per se.
Length = 224
Score = 30.4 bits (69), Expect = 0.22
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 30 LRLGDCLTLSGDLGSGKSFLARSIIR 55
+ G+C+ LSG G+GKS L +S+
Sbjct: 31 VNAGECVALSGPSGAGKSTLLKSLYA 56
>gnl|CDD|181455 PRK08517, PRK08517, DNA polymerase III subunit epsilon;
Provisional.
Length = 257
Score = 30.0 bits (68), Expect = 0.32
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 79 SIPVAH---FDFYRLSSHQEVVELGFDEILNERICIIEWPEIGRSLLPKKY 126
S+ VAH FD+ +S E E+G +LN ++C I+ + R++ +Y
Sbjct: 148 SVFVAHNVNFDYNFISRSLE--EIGLGPLLNRKLCTIDLAK--RTIESPRY 194
>gnl|CDD|185088 PRK15134, PRK15134, microcin C ABC transporter ATP-binding
protein YejF; Provisional.
Length = 529
Score = 29.7 bits (67), Expect = 0.37
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 33 GDCLTLSGDLGSGKSFLARSIIRFL 57
G+ L L G+ GSGKS A SI+R L
Sbjct: 35 GETLALVGESGSGKSVTALSILRLL 59
>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion.
Length = 544
Score = 29.2 bits (66), Expect = 0.46
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 5 EKHLTV----IPIPNEKNTICLGRHLASILRLGDCLTLSGDLGSGKSFLARSII 54
E HL+V I P K G L+ G+ L + G GSGKS LAR I+
Sbjct: 314 EGHLSVENVTIVPPGGKKPTLRGISFR--LQAGEALAIIGPSGSGKSTLARLIV 365
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide
dismutase. NikD and NikE are homologous.
Length = 230
Score = 28.9 bits (65), Expect = 0.61
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 25 HLASILRLGDCLTLSGDLGSGKSFLARSIIRFL 57
L L+ G+ L L G+ GSGKS +I+ L
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLL 36
>gnl|CDD|181233 PRK08116, PRK08116, hypothetical protein; Validated.
Length = 268
Score = 28.4 bits (64), Expect = 0.76
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 36 LTLSGDLGSGKSFLARSIIRFLM 58
L L G +G+GK++LA I L+
Sbjct: 117 LLLWGSVGTGKTYLAACIANELI 139
>gnl|CDD|185183 PRK15283, PRK15283, putative fimbrial subunit StfA; Provisional.
Length = 186
Score = 28.2 bits (62), Expect = 1.2
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 18 NTICLGRHLASILRLGDC----LTLSGDLGSGKSFL 49
++I +G HL S ++LGD LT++G + + K L
Sbjct: 120 SSIVIGNHLGSAIKLGDAYSENLTMNGSVAAAKQTL 155
>gnl|CDD|129213 TIGR00107, deoD, purine-nucleoside phosphorylase, family 1 (deoD).
Purine nucleoside phosphorylase (also called inosine
phosphorylase) is a purine salvage enzyme. Purine
nucleosides, such as guanosine, inosine, or xanthosine,
plus orthophosphate, can be converted to their
respective purine bases (guanine, hypoxanthine, or
xanthine) plus ribose-1-phosphate. This family of purine
nucleoside phosphorylase is restricted to the bacteria.
Length = 232
Score = 27.4 bits (61), Expect = 1.7
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 16/63 (25%)
Query: 29 ILRLGDCLTLSGDLG----------SGKSFLARSIIRFLMHDDALEVLSPTFTLVQL-YD 77
I+R+G C + D+ S S R +RF+ D A F LV+L Y
Sbjct: 82 IIRIGSCGAIRPDVKLRDVIIAMGASTDSKYNR--VRFVEVDFA---AIADFELVELAYQ 136
Query: 78 ASI 80
+
Sbjct: 137 TAK 139
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 27.4 bits (61), Expect = 2.0
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 30 LRL--GDCLTLSGDLGSGKSFLARSII 54
LRL G+ L + G+ G GKS AR+II
Sbjct: 42 LRLYEGETLGVVGESGCGKSTFARAII 68
>gnl|CDD|150151 pfam09382, RQC, RQC domain. This DNA-binding domain is found in
the RecQ helicase among others and has a
helix-turn-helix structure. The RQC domain, found only
in RecQ family enzymes, is a high affinity G4 DNA
binding domain.
Length = 92
Score = 27.1 bits (61), Expect = 2.1
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 43 GSGKSF---LARSIIRFLMHDDALEVLSPTFTLVQLYDASIPV 82
G GK R +IR L+ + LEV + +++L V
Sbjct: 49 GIGKDLSKKEWRRLIRQLIAEGYLEVDIEGYGVLKLTPKGREV 91
>gnl|CDD|129002 smart00763, AAA_PrkA, PrkA AAA domain. This is a family of PrkA
bacterial and archaeal serine kinases approximately 630
residues long. This is the N-terminal AAA domain.
Length = 361
Score = 26.9 bits (60), Expect = 2.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 36 LTLSGDLGSGKSFLARSIIRFL 57
L L G +G GKS L + R L
Sbjct: 81 LYLLGPVGGGKSSLVECLKRGL 102
>gnl|CDD|149019 pfam07728, AAA_5, AAA domain (dynein-related subfamily). This
Pfam entry includes some of the AAA proteins not
detected by the pfam00004 model.
Length = 139
Score = 26.9 bits (60), Expect = 2.7
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 38 LSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFT----LVQLYD 77
L G G+GKS LA + L + V T L +
Sbjct: 4 LVGPPGTGKSELAERLAAALSNRPVFYVQLTRDTTEEDLKGRRN 47
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization.
Members of this protein family are the ATP-binding
cassette (ABC) subunit of the known or predicted
high-affinity xylose ABC transporter for xylose import.
These genes, which closely resemble other sugar
transport ABC transporter genes, typically are encoded
near xylose utilization enzymes and regulatory
proteins. Note that this form of the transporter
contains two copies of the ABC transporter domain
(pfam00005).
Length = 500
Score = 26.7 bits (59), Expect = 2.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 30 LRLGDCLTLSGDLGSGKSFLAR 51
+R G+C+ L G+ G+GKS L +
Sbjct: 24 VRPGECVGLCGENGAGKSTLMK 45
>gnl|CDD|177362 PHA02415, PHA02415, DNA primase domain-containing protein.
Length = 930
Score = 26.5 bits (58), Expect = 3.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 22 LGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFL 57
LG HL ++L +T+ + G+GKS L + + R L
Sbjct: 573 LGGHLKALLGFWPHITIQANKGAGKSTLIKRLERSL 608
>gnl|CDD|161851 TIGR00389, glyS_dimeric, glycyl-tRNA synthetase, dimeric type.
This model describes a glycyl-tRNA synthetase distinct
from the two alpha and two beta chains of the
tetrameric E. coli glycyl-tRNA synthetase. This enzyme
is a homodimeric class II tRNA synthetase and is
recognized by pfam model tRNA-synt_2b, which recognizes
His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Length = 551
Score = 26.3 bits (58), Expect = 3.5
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 41 DLGSGKSFLARSIIR-----FLMHDDALEVLSPTFTLVQLYDASIPVAHF 85
D G + L +I F+ ++ LE+ +P T ++ AS V +F
Sbjct: 31 DYGPLGAVLKNNIKNAWRKFFIKNERVLEIDTPIITPEEVLKASGHVDNF 80
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 26.4 bits (59), Expect = 3.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 30 LRLGDCLTLSGDLGSGKSFL 49
+R G+ ++L G+ G+GKS L
Sbjct: 28 VRAGEIVSLCGENGAGKSTL 47
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes.
Length = 571
Score = 26.2 bits (58), Expect = 3.9
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 33 GDCLTLSGDLGSGKSFLARSIIRFLMHD 60
G+ + L G GSGKS L I RF D
Sbjct: 358 GETVALVGRSGSGKSTLVNLIPRFYEPD 385
>gnl|CDD|177488 PHA02774, PHA02774, E1; Provisional.
Length = 613
Score = 26.0 bits (58), Expect = 5.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 35 CLTLSGDLGSGKSFLARSIIRFL 57
CL + G +GKS S+I+FL
Sbjct: 436 CLVIYGPPDTGKSMFCMSLIKFL 458
>gnl|CDD|171876 PRK13152, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 201
Score = 25.6 bits (56), Expect = 6.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 98 ELGFDEILNERICIIEWPEIG 118
ELGF E L E++ + + P +G
Sbjct: 58 ELGFIEALKEQVLVQKKPILG 78
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide
dismutase.
Length = 265
Score = 25.5 bits (56), Expect = 6.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 30 LRLGDCLTLSGDLGSGKSFLARSII 54
+ G+ + L G G GKS LAR ++
Sbjct: 34 IEEGETVGLLGRSGCGKSTLARLLL 58
>gnl|CDD|172945 PRK14470, PRK14470, ribosomal RNA large subunit methyltransferase
N; Provisional.
Length = 336
Score = 25.3 bits (55), Expect = 7.1
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 11 IPIPNEKNTICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59
IP+ + + +CL L C T G LG +S + I+ L+
Sbjct: 90 IPLFDTHHVVCLSSQAGCALGCAFCAT--GKLGLDRSLRSWEIVAQLLA 136
>gnl|CDD|180029 PRK05342, clpX, ATP-dependent protease ATP-binding subunit ClpX;
Provisional.
Length = 412
Score = 25.1 bits (56), Expect = 7.6
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 43 GSGKSFLARSIIRFL 57
GSGK+ LA+++ R L
Sbjct: 118 GSGKTLLAQTLARIL 132
>gnl|CDD|148992 pfam07693, KAP_NTPase, KAP family P-loop domain. The KAP (after
Kidins220/ARMS and PifA) family of predicted NTPases are
sporadically distributed across a wide phylogenetic
range in bacteria and in animals. Many of the
prokaryotic KAP NTPases are encoded in plasmids and tend
to undergo disruption to form pseudogenes. A unique
feature of all eukaryotic and certain bacterial KAP
NTPases is the presence of two or four transmembrane
helices inserted into the P-loop NTPase domain. These
transmembrane helices anchor KAP NTPases in the membrane
such that the P-loop domain is located on the
intracellular side.
Length = 301
Score = 25.4 bits (56), Expect = 7.7
Identities = 16/107 (14%), Positives = 31/107 (28%), Gaps = 18/107 (16%)
Query: 35 CLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDASIPVAHFDFYRLSSHQ 94
+ L G GSGK+ + + + + +FD + S
Sbjct: 22 VIGLYGAWGSGKTSFLNLLED-ELKEF---------------PEEFHIVYFDPWLFSGQD 65
Query: 95 EVVELGFDEILNERICIIEWPEIGRSLLPKKYIDIHLSQGKTGRKAT 141
+ V + + E+ + LL K + + K G
Sbjct: 66 DAVASLLAALADA--LEEEYSALATKLLIGKKLLALVIGAKIGGNFG 110
>gnl|CDD|128538 smart00242, MYSc, Myosin. Large ATPases. ATPase; molecular motor.
Muscle contraction consists of a cyclical interaction
between myosin and actin. The core of the myosin
structure is similar in fold to that of kinesin.
Length = 677
Score = 25.2 bits (56), Expect = 9.0
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 35 CLTLSGDLGSGKSFLARSIIRFL 57
+ +SG+ G+GK+ + I+++L
Sbjct: 94 SIIISGESGAGKTENTKKIMQYL 116
>gnl|CDD|148176 pfam06414, Zeta_toxin, Zeta toxin. This family consists of
several bacterial zeta toxin proteins. Zeta toxin is
thought to be part of a postregulational killing system
in bacteria. It relies on antitoxin/toxin systems that
secure stable inheritance of low and medium copy number
plasmids during cell division and kill cells that have
lost the plasmid.
Length = 191
Score = 24.9 bits (55), Expect = 9.1
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 38 LSGDLGSGKSFLARSIIRFLMHDDALEV 65
L G G+GK+ LAR+++ L + + +
Sbjct: 17 LGGQPGAGKTELARALLEELGGGNVVRI 44
>gnl|CDD|131019 TIGR01964, chpXY, CO2 hydration protein. This small family of
proteins includes paralogs ChpX and ChpY in
Synechococcus sp. PCC7942 and other cyanobacteria,
associated with distinct NAD(P)H dehydrogenase
complexes. These proteins collectively enable
light-dependent CO2 hydration and CO2 uptake; loss of
both blocks growth at low CO2 concentrations.
Length = 367
Score = 25.2 bits (55), Expect = 9.1
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 50 ARSII-RFLMHDDALEVLSPTFTLVQLYDASIPVAHFDFYR 89
R I + + ++L + L LY+ ++P FYR
Sbjct: 195 GRPIYYHVYIDGETYDILPKSAGLTFLYETAVPYVEAVFYR 235
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption.
This family shows strong sequence similiarity to a
number of amino acid ABC transporter ATP-binding
proteins.
Length = 252
Score = 25.2 bits (55), Expect = 9.2
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 10/47 (21%)
Query: 33 GDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLV---QLY 76
G+ + L G GSGKS +I+R LM LE + V QLY
Sbjct: 26 GEKVALIGPSGSGKS----TILRILM---TLEPIDEGQIQVEGEQLY 65
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 24.9 bits (54), Expect = 9.3
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 17/82 (20%)
Query: 33 GDCLTLSGDLGSGKSFLARSIIRFLMH--DDALEVLSPTFTLVQLYDASIPVAH------ 84
GD +++ G GSGKS R I FL + ++ V T LV+ D + VA
Sbjct: 31 GDVISIIGSSGSGKSTFLRC-INFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRL 89
Query: 85 --------FDFYRLSSHQEVVE 98
F + L SH V+E
Sbjct: 90 LRTRLTMVFQHFNLWSHMTVLE 111
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.323 0.138 0.410
Gapped
Lambda K H
0.267 0.0793 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,630,016
Number of extensions: 160215
Number of successful extensions: 384
Number of sequences better than 10.0: 1
Number of HSP's gapped: 378
Number of HSP's successfully gapped: 53
Length of query: 162
Length of database: 5,994,473
Length adjustment: 86
Effective length of query: 76
Effective length of database: 4,136,185
Effective search space: 314350060
Effective search space used: 314350060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)