BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780824|ref|YP_003065237.1| hypothetical protein
CLIBASIA_03585 [Candidatus Liberibacter asiaticus str. psy62]
         (162 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780824|ref|YP_003065237.1| hypothetical protein CLIBASIA_03585 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 162

 Score =  335 bits (858), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 162/162 (100%), Positives = 162/162 (100%)

Query: 1   MNFSEKHLTVIPIPNEKNTICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60
           MNFSEKHLTVIPIPNEKNTICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD
Sbjct: 1   MNFSEKHLTVIPIPNEKNTICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60

Query: 61  DALEVLSPTFTLVQLYDASIPVAHFDFYRLSSHQEVVELGFDEILNERICIIEWPEIGRS 120
           DALEVLSPTFTLVQLYDASIPVAHFDFYRLSSHQEVVELGFDEILNERICIIEWPEIGRS
Sbjct: 61  DALEVLSPTFTLVQLYDASIPVAHFDFYRLSSHQEVVELGFDEILNERICIIEWPEIGRS 120

Query: 121 LLPKKYIDIHLSQGKTGRKATISAERWIISHINQMNRSTSQQ 162
           LLPKKYIDIHLSQGKTGRKATISAERWIISHINQMNRSTSQQ
Sbjct: 121 LLPKKYIDIHLSQGKTGRKATISAERWIISHINQMNRSTSQQ 162


>gi|254780826|ref|YP_003065239.1| phosphoenolpyruvate carboxykinase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 509

 Score = 25.4 bits (54), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 34  DCLTLSGDLGSGKSFLARSIIRFLMHDD 61
           D     G  G+GK+ L+ S+ RFL+ DD
Sbjct: 219 DVALFFGLSGTGKTTLSASVDRFLIGDD 246


>gi|254780925|ref|YP_003065338.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 833

 Score = 25.0 bits (53), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 7/115 (6%)

Query: 7   HLTVIPIPNEKNTICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVL 66
           H  +I +P E++   L + L +  ++     L  +  S K F+    +RFL   D  + L
Sbjct: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNN--SKKGFMFG--VRFLRDSDGNQYL 242

Query: 67  SPTFTLVQLYDASIPVAHFDFYRLSSHQEVVELGFDEILNERICIIEWPEIGRSL 121
                 +     +   A+FD     +H+ VV++ FDE+   R   +    IG+ L
Sbjct: 243 VEDKVEISGIHLNGATANFD---PKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294


>gi|255764514|ref|YP_003065586.2| DNA repair protein RecN [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 554

 Score = 24.6 bits (52), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 11/17 (64%), Positives = 13/17 (76%)

Query: 38 LSGDLGSGKSFLARSII 54
          LSGD GSGKS L  ++I
Sbjct: 26 LSGDTGSGKSILLDALI 42


>gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane
           subunits [Candidatus Liberibacter asiaticus str. psy62]
          Length = 528

 Score = 24.3 bits (51), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 33  GDCLTLSGDLGSGKSFLARSIIRF 56
           G+ + L GD G+GK+ +   I+RF
Sbjct: 316 GETIALVGDSGAGKTSIFSLILRF 339


>gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein
          [Candidatus Liberibacter asiaticus str. psy62]
          Length = 348

 Score = 23.9 bits (50), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 30 LRLGDCLTLSGDLGSGKSFLARSI 53
          ++ G+ L L G  G+GKS L RSI
Sbjct: 52 VKKGEILVLMGLSGAGKSTLLRSI 75


>537021.9.peg.472_1 
          Length = 369

 Score = 23.9 bits (50), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 31 RLGDCLTLSGDLGSGKSFLARSIIRFLMHDDA 62
          R+     LSG  G GK+  AR I R L +  A
Sbjct: 19 RIAQSYMLSGTRGIGKTTTARIIARSLNYKTA 50


>gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 483

 Score = 23.5 bits (49), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 24/50 (48%)

Query: 23  GRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTL 72
            R L  I R+   + +SG  GSGK+ L   + R++  D+ +     T  L
Sbjct: 240 ARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAEL 289


>gi|254780531|ref|YP_003064944.1| flagellin domain-containing protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 452

 Score = 23.1 bits (48), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 38  LSGDLGSGKSFLARSIIRFLMHDDALEV 65
           L  DLGS  + +A+S+I   + DD  +V
Sbjct: 134 LRTDLGSSTASIAKSVIGSFIRDDNGKV 161


>gi|254780831|ref|YP_003065244.1| hypothetical protein CLIBASIA_03620 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 341

 Score = 22.7 bits (47), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 8  LTVIPIPNEKNTICLGRHLASILRLGDCLTLS 39
          L V+ IP EKN I   + L+ I  + + + LS
Sbjct: 13 LKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLS 44


>gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 700

 Score = 22.7 bits (47), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 8/13 (61%), Positives = 11/13 (84%)

Query: 38  LSGDLGSGKSFLA 50
           L GD+GSGK+ +A
Sbjct: 298 LQGDVGSGKTLVA 310


>gi|254780881|ref|YP_003065294.1| Mrp protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 101

 Score = 22.3 bits (46), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 8  LTVIPIPNEKNTICLGRHLASILRLGDCLTLS 39
          L V+ IP EKN I   + L+ I  + + + LS
Sbjct: 13 LKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLS 44


>gi|254780491|ref|YP_003064904.1| Mrp protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 101

 Score = 22.3 bits (46), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 8  LTVIPIPNEKNTICLGRHLASILRLGDCLTLS 39
          L V+ IP EKN I   + L+ I  + + + LS
Sbjct: 13 LKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLS 44


>gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 424

 Score = 22.3 bits (46), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 38  LSGDLGSGKSFLARSIIRFL 57
           L G  G GK++LA+++ R +
Sbjct: 118 LVGPTGCGKTYLAQTLARII 137


>gi|254781094|ref|YP_003065507.1| glycyl-tRNA synthetase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 702

 Score = 22.3 bits (46), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 12/42 (28%), Positives = 23/42 (54%)

Query: 86  DFYRLSSHQEVVELGFDEILNERICIIEWPEIGRSLLPKKYI 127
           D +RL+S   +  +   ++L E I ++EW ++      KKY+
Sbjct: 231 DAHRLASAVGLELVEDKDLLEEIIGLVEWVQVFMGSFDKKYL 272


>gi|255764501|ref|YP_003064973.2| thiamine transporter membrane protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 535

 Score = 21.9 bits (45), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 93  HQEVVELGFDEILNERICIIEWPEIGRSLLP 123
            Q  ++LG +     R   +EWP + R +LP
Sbjct: 170 RQLALQLGMNPWYFFRF--VEWPYLRRQILP 198


>gi|254780498|ref|YP_003064911.1| putative glycerol-3-phosphate acyltransferase PlsX [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 364

 Score = 21.9 bits (45), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 42 LGSGKSFLARSIIRFLMHDDA 62
          LG+ K   A   IRFLM+ DA
Sbjct: 31 LGASKFLEAHPRIRFLMYGDA 51


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.138    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,036
Number of Sequences: 1233
Number of extensions: 4146
Number of successful extensions: 25
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 19
length of query: 162
length of database: 328,796
effective HSP length: 67
effective length of query: 95
effective length of database: 246,185
effective search space: 23387575
effective search space used: 23387575
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 35 (18.1 bits)