Query gi|254780826|ref|YP_003065239.1| phosphoenolpyruvate carboxykinase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 509
No_of_seqs 210 out of 968
Neff 5.3
Searched_HMMs 33803
Date Wed Jun 1 13:36:05 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780826.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1j3b_A ATP-dependent phosphoe 100.0 0 0 778.7 27.3 286 1-330 4-295 (295)
2 >1ytm_A Phosphoenolpyruvate ca 100.0 0 0 764.0 22.3 258 185-507 1-258 (270)
3 >1ii2_A Phosphoenolpyruvate ca 100.0 0 0 757.0 23.8 277 10-330 2-283 (283)
4 >2olr_A Phosphoenolpyruvate ca 100.0 0 0 724.4 24.4 262 1-321 12-286 (286)
5 >2olr_A Phosphoenolpyruvate ca 100.0 0 0 700.7 20.4 240 202-507 1-240 (254)
6 >1ii2_A Phosphoenolpyruvate ca 100.0 0 0 658.8 20.8 221 203-509 1-224 (241)
7 >1ytm_A Phosphoenolpyruvate ca 100.0 0 0 620.9 21.7 238 8-321 1-249 (249)
8 >1j3b_A ATP-dependent phosphoe 100.0 0 0 338.8 3.1 124 209-475 1-124 (124)
9 >1j3b_A ATP-dependent phosphoe 100.0 2.8E-37 8.4E-42 266.5 9.3 93 351-509 6-98 (110)
10 >2qmh_A HPR kinase/phosphoryla 98.4 7E-08 2.1E-12 71.8 1.6 118 191-311 8-139 (177)
11 >1ko7_A HPR kinase/phosphatase 96.7 0.001 3E-08 44.2 2.9 48 203-252 2-52 (158)
12 >1knx_A Probable HPR(Ser) kina 96.2 0.0021 6.1E-08 42.2 2.0 44 204-249 2-48 (158)
13 >3dtb_A Phosphoenolpyruvate ca 96.0 0.13 3.7E-06 30.3 15.9 260 6-340 39-325 (333)
14 >2zci_A Phosphoenolpyruvate ca 96.0 0.13 3.8E-06 30.3 21.0 226 6-306 30-274 (316)
15 >3dtb_A Phosphoenolpyruvate ca 95.8 0.15 4.5E-06 29.8 16.1 241 188-501 4-268 (291)
16 >2faf_A Phosphoenolpyruvate ca 94.4 0.39 1.1E-05 27.1 20.3 225 6-303 22-270 (317)
17 >1ukz_A Uridylate kinase; tran 92.5 0.054 1.6E-06 32.8 1.6 32 206-237 3-34 (203)
18 >2pez_A Bifunctional 3'-phosph 91.9 0.057 1.7E-06 32.6 1.1 22 216-237 3-24 (179)
19 >2r2a_A Uncharacterized protei 91.4 0.25 7.4E-06 28.4 4.0 17 219-235 6-22 (199)
20 >1rkb_A Protein AD-004, protei 91.4 0.054 1.6E-06 32.8 0.6 19 219-237 5-23 (173)
21 >1yj5_A 5' polynucleotide kina 91.4 0.091 2.7E-06 31.3 1.7 21 217-237 20-40 (162)
22 >2p65_A Hypothetical protein P 91.2 0.063 1.9E-06 32.3 0.8 19 219-237 44-62 (187)
23 >3hws_A ATP-dependent CLP prot 91.0 0.067 2E-06 32.2 0.7 48 186-236 22-69 (255)
24 >2axn_A 6-phosphofructo-2-kina 90.9 0.064 1.9E-06 32.3 0.5 21 217-237 8-28 (218)
25 >1ofh_A ATP-dependent HSL prot 90.7 0.075 2.2E-06 31.8 0.7 20 218-237 50-69 (201)
26 >1zp6_A Hypothetical protein A 90.6 0.11 3.2E-06 30.8 1.5 21 217-237 8-28 (191)
27 >1y63_A LMAJ004144AAA protein; 90.6 0.1 3.1E-06 30.9 1.4 21 217-237 9-29 (184)
28 >1knq_A Gluconate kinase; ALFA 90.4 0.11 3.1E-06 30.8 1.3 20 218-237 8-27 (175)
29 >2gks_A Bifunctional SAT/APS k 90.3 0.1 3E-06 31.0 1.1 20 218-237 4-23 (178)
30 >3a4m_A L-seryl-tRNA(SEC) kina 90.2 0.11 3.2E-06 30.7 1.2 19 218-236 4-22 (182)
31 >2yvu_A Probable adenylyl-sulf 90.1 0.13 3.8E-06 30.3 1.5 22 216-237 11-32 (186)
32 >1fnn_A CDC6P, cell division c 90.0 0.12 3.6E-06 30.5 1.3 20 218-237 44-63 (192)
33 >1e6c_A Shikimate kinase; phos 89.7 0.09 2.6E-06 31.3 0.5 19 219-237 3-21 (173)
34 >2qby_B CDC6 homolog 3, cell d 89.6 0.12 3.5E-06 30.5 1.1 19 219-237 46-64 (196)
35 >3cm0_A Adenylate kinase; ATP- 89.6 0.1 3.1E-06 30.9 0.7 19 219-237 5-23 (186)
36 >1kag_A SKI, shikimate kinase 89.5 0.1 3E-06 31.0 0.6 33 219-251 5-41 (173)
37 >3h0k_A UPF0200 protein SSO104 89.4 0.11 3.3E-06 30.7 0.7 18 220-237 2-19 (178)
38 >2rhm_A Putative kinase; ZP_00 89.3 0.17 5E-06 29.5 1.6 21 217-237 4-24 (193)
39 >2vli_A Antibiotic resistance 89.3 0.12 3.5E-06 30.5 0.8 20 218-237 5-24 (183)
40 >2qy9_A Cell division protein 89.0 0.19 5.6E-06 29.2 1.7 33 217-249 6-47 (198)
41 >2c95_A Adenylate kinase 1; AP 89.0 0.13 3.9E-06 30.2 0.9 20 218-237 9-28 (196)
42 >1xp8_A RECA protein, recombin 89.0 0.14 4.1E-06 30.1 1.0 20 218-237 4-23 (215)
43 >3dm5_A SRP54, signal recognit 88.9 0.18 5.3E-06 29.3 1.5 22 216-237 5-26 (192)
44 >1m8p_A Sulfate adenylyltransf 88.8 0.17 4.9E-06 29.6 1.3 20 218-237 5-24 (182)
45 >2bdt_A BH3686; alpha-beta pro 88.8 0.13 3.7E-06 30.3 0.7 19 219-237 3-21 (189)
46 >2p5t_B PEZT; postsegregationa 88.8 0.21 6.2E-06 28.9 1.8 20 218-237 32-51 (253)
47 >2pi1_A D-lactate dehydrogenas 88.7 0.45 1.3E-05 26.7 3.5 137 354-507 153-319 (334)
48 >1gvn_B Zeta; postsegregationa 88.7 0.23 6.9E-06 28.6 2.0 20 218-237 33-52 (287)
49 >2rgx_A Adenylate kinase; tran 88.5 0.14 4.1E-06 30.1 0.7 32 220-251 2-37 (148)
50 >1g41_A Heat shock protein HSL 88.4 0.2 5.9E-06 29.0 1.5 31 425-455 267-297 (335)
51 >1qf9_A UMP/CMP kinase, protei 88.3 0.22 6.5E-06 28.7 1.7 21 217-237 5-25 (194)
52 >2cdn_A Adenylate kinase; phos 88.3 0.19 5.7E-06 29.1 1.3 23 215-237 17-39 (201)
53 >1zuh_A Shikimate kinase; alph 88.1 0.15 4.3E-06 29.9 0.6 36 219-254 8-47 (168)
54 >1bif_A 6-phosphofructo-2-kina 88.0 0.17 4.9E-06 29.5 0.9 29 209-237 30-58 (231)
55 >2qt1_A Nicotinamide riboside 88.0 1.9 5.6E-05 22.5 7.0 20 218-237 21-40 (207)
56 >2j37_W Signal recognition par 88.0 0.2 5.9E-06 29.0 1.3 21 217-237 5-25 (190)
57 >1x6v_B Bifunctional 3'-phosph 87.9 0.16 4.7E-06 29.7 0.7 20 218-237 52-71 (233)
58 >1ly1_A Polynucleotide kinase; 87.9 0.16 4.7E-06 29.7 0.7 19 219-237 3-21 (114)
59 >2bwj_A Adenylate kinase 5; ph 87.9 0.17 5.2E-06 29.4 0.9 19 219-237 13-31 (199)
60 >2px0_A Flagellar biosynthesis 87.8 0.2 5.9E-06 29.0 1.2 21 217-237 6-26 (187)
61 >2zan_A Vacuolar protein sorti 87.7 0.18 5.2E-06 29.4 0.9 51 178-237 136-186 (300)
62 >3c8u_A Fructokinase; YP_61236 87.7 0.25 7.4E-06 28.4 1.6 21 217-237 21-41 (146)
63 >2ccj_A DTMP kinase, thymidyla 87.7 0.17 5E-06 29.5 0.7 19 219-237 3-21 (205)
64 >3hdt_A Putative kinase; struc 87.6 0.23 6.7E-06 28.6 1.4 22 216-237 12-33 (223)
65 >1hqc_A RUVB; extended AAA-ATP 87.5 0.16 4.6E-06 29.7 0.5 19 219-237 39-57 (167)
66 >1qhx_A CPT, protein (chloramp 87.5 0.2 6E-06 29.0 1.1 19 219-237 4-22 (178)
67 >2z4s_A Chromosomal replicatio 87.5 0.22 6.5E-06 28.8 1.2 20 218-237 130-149 (262)
68 >1znw_A Guanylate kinase, GMP 87.5 0.21 6.2E-06 28.9 1.1 20 217-236 19-38 (155)
69 >1zd8_A GTP:AMP phosphotransfe 87.4 0.18 5.3E-06 29.3 0.7 31 219-249 8-42 (227)
70 >2v3c_C SRP54, signal recognit 87.4 0.3 8.7E-06 27.9 1.8 21 217-237 7-27 (188)
71 >1g8f_A Sulfate adenylyltransf 87.3 0.14 4.1E-06 30.1 0.1 25 218-242 4-28 (120)
72 >3bos_A Putative DNA replicati 87.3 0.24 7.1E-06 28.5 1.3 21 217-237 51-71 (175)
73 >1kht_A Adenylate kinase; phos 87.1 0.19 5.6E-06 29.2 0.7 19 219-237 4-22 (192)
74 >3cr8_A Sulfate adenylyltranfe 87.1 0.17 5.2E-06 29.4 0.5 19 219-237 6-24 (188)
75 >2pt5_A Shikimate kinase, SK; 86.9 0.18 5.2E-06 29.4 0.5 17 221-237 3-19 (168)
76 >3fdi_A Uncharacterized protei 86.9 0.24 7E-06 28.5 1.1 19 219-237 7-25 (201)
77 >2c9o_A RUVB-like 1; hexameric 86.8 0.22 6.4E-06 28.8 0.9 18 219-236 64-81 (365)
78 >1lw7_A Transcriptional regula 86.7 0.19 5.6E-06 29.2 0.6 19 219-237 10-28 (204)
79 >2qi9_C Vitamin B12 import ATP 86.7 0.22 6.7E-06 28.7 1.0 20 218-237 26-45 (249)
80 >3ec2_A DNA replication protei 86.7 0.2 5.9E-06 29.0 0.6 19 219-237 39-57 (180)
81 >1mv5_A LMRA, multidrug resist 86.5 0.15 4.6E-06 29.8 0.0 71 217-293 27-98 (243)
82 >3tmk_A Thymidylate kinase; ph 86.3 0.24 7.1E-06 28.5 0.9 19 219-237 6-24 (216)
83 >2qz4_A Paraplegin; AAA+, SPG7 86.3 0.74 2.2E-05 25.2 3.4 47 185-237 12-58 (177)
84 >1nn5_A Similar to deoxythymid 86.2 0.29 8.5E-06 28.0 1.3 20 218-237 9-28 (215)
85 >1jbk_A CLPB protein; beta bar 86.2 0.24 7.2E-06 28.5 0.9 19 219-237 44-62 (195)
86 >1r6b_X CLPA protein; AAA+, N- 86.0 0.23 6.9E-06 28.6 0.7 19 219-237 52-70 (192)
87 >2v1u_A Cell division control 86.0 0.3 8.9E-06 27.8 1.3 19 219-237 45-63 (200)
88 >2iyv_A Shikimate kinase, SK; 86.0 0.21 6.3E-06 28.8 0.5 19 219-237 3-21 (169)
89 >1nks_A Adenylate kinase; ther 85.9 0.26 7.7E-06 28.2 0.9 18 220-237 3-20 (194)
90 >1tev_A UMP-CMP kinase; ploop, 85.9 0.27 7.9E-06 28.2 1.0 20 218-237 3-22 (196)
91 >2ce7_A Cell division protein 85.7 0.26 7.8E-06 28.2 0.9 47 185-237 22-68 (185)
92 >1m7g_A Adenylylsulfate kinase 85.6 0.33 9.8E-06 27.6 1.3 21 217-237 24-44 (211)
93 >1via_A Shikimate kinase; stru 85.6 0.23 6.9E-06 28.6 0.6 19 219-237 5-23 (175)
94 >1w5s_A ORC2; CDC6, DNA replic 85.6 0.14 4.1E-06 30.1 -0.6 19 219-237 53-71 (214)
95 >1sxj_A Activator 1 95 kDa sub 85.4 0.24 7E-06 28.5 0.5 53 184-237 44-96 (208)
96 >2ff7_A Alpha-hemolysin transl 85.3 0.1 3.1E-06 30.9 -1.4 21 217-237 34-54 (247)
97 >2jaq_A Deoxyguanosine kinase; 85.3 0.27 7.9E-06 28.2 0.7 18 220-237 2-19 (205)
98 >1a7j_A Phosphoribulokinase; t 85.1 0.28 8.3E-06 28.0 0.8 19 219-237 6-24 (290)
99 >1in4_A RUVB, holliday junctio 85.0 0.27 7.9E-06 28.2 0.6 19 219-237 52-70 (179)
100 >1l8q_A Chromosomal replicatio 85.0 0.3 8.9E-06 27.8 0.9 21 217-237 36-56 (166)
101 >2vhj_A Ntpase P4, P4; non- hy 85.0 0.28 8.3E-06 28.0 0.7 18 220-237 61-78 (267)
102 >3cmw_A Protein RECA, recombin 84.9 0.39 1.2E-05 27.1 1.4 20 218-237 34-53 (289)
103 >2plr_A DTMP kinase, probable 84.9 0.28 8.4E-06 28.0 0.7 19 219-237 5-23 (213)
104 >3g5u_A MCG1178, multidrug res 84.8 0.11 3.3E-06 30.7 -1.4 70 218-293 43-113 (287)
105 >3dhw_C Methionine import ATP- 84.8 0.4 1.2E-05 27.0 1.5 58 349-418 139-199 (245)
106 >1sxj_E Activator 1 40 kDa sub 84.8 0.49 1.5E-05 26.4 1.9 19 219-237 37-55 (192)
107 >3ld9_A DTMP kinase, thymidyla 84.8 0.36 1.1E-05 27.3 1.2 33 204-237 8-40 (223)
108 >1zu4_A FTSY; GTPase, signal r 84.7 0.39 1.2E-05 27.1 1.4 22 216-237 7-28 (203)
109 >2vp4_A Deoxynucleoside kinase 84.7 0.3 8.8E-06 27.9 0.7 19 219-237 21-39 (230)
110 >2vf7_A UVRA2, excinuclease AB 84.7 0.34 1E-05 27.4 1.1 20 218-237 36-55 (204)
111 >1ak2_A Adenylate kinase isoen 84.6 0.3 8.8E-06 27.9 0.7 36 217-252 15-54 (185)
112 >1g29_1 MALK, maltose transpor 84.5 0.33 9.9E-06 27.5 1.0 58 349-418 138-198 (234)
113 >1qvr_A CLPB protein; coiled c 84.3 0.29 8.6E-06 27.9 0.6 19 219-237 47-65 (186)
114 >2v54_A DTMP kinase, thymidyla 84.2 0.32 9.4E-06 27.7 0.7 19 219-237 5-23 (204)
115 >1l2t_A Hypothetical ABC trans 84.1 0.41 1.2E-05 27.0 1.2 56 349-416 144-202 (235)
116 >1z6g_A Guanylate kinase; stru 84.1 0.36 1.1E-05 27.3 1.0 20 217-236 22-41 (169)
117 >1zak_A Adenylate kinase; ATP: 84.1 0.33 9.7E-06 27.6 0.8 19 219-237 6-24 (222)
118 >1v43_A Sugar-binding transpor 84.0 0.41 1.2E-05 26.9 1.2 21 215-236 35-55 (239)
119 >2b8t_A Thymidine kinase; deox 83.9 0.42 1.3E-05 26.8 1.2 20 218-237 12-31 (155)
120 >1rz3_A Hypothetical protein r 83.8 0.49 1.5E-05 26.4 1.6 20 218-237 22-41 (201)
121 >2i3b_A HCR-ntpase, human canc 83.7 0.33 9.8E-06 27.6 0.7 18 220-237 3-20 (189)
122 >1um8_A ATP-dependent CLP prot 83.6 0.32 9.6E-06 27.6 0.6 18 219-236 73-90 (272)
123 >1oxx_K GLCV, glucose, ABC tra 83.5 0.33 9.8E-06 27.6 0.6 58 349-418 139-199 (243)
124 >1q3t_A Cytidylate kinase; nuc 83.4 0.46 1.4E-05 26.6 1.3 21 217-237 15-35 (149)
125 >2z0h_A DTMP kinase, thymidyla 83.3 0.31 9.1E-06 27.8 0.4 38 400-448 156-193 (197)
126 >1ltq_A Polynucleotide kinase; 83.3 0.37 1.1E-05 27.3 0.7 19 219-237 3-21 (114)
127 >3a8t_A Adenylate isopentenylt 83.0 0.47 1.4E-05 26.5 1.2 21 217-237 39-59 (228)
128 >2qby_A CDC6 homolog 1, cell d 83.0 0.41 1.2E-05 26.9 0.9 19 219-237 46-64 (196)
129 >3fvq_A Fe(3+) IONS import ATP 82.8 0.53 1.6E-05 26.2 1.4 58 349-418 137-197 (241)
130 >2r6f_A Excinuclease ABC subun 82.8 0.5 1.5E-05 26.4 1.3 20 218-237 44-63 (212)
131 >2d2e_A SUFC protein; ABC-ATPa 82.5 0.45 1.3E-05 26.7 1.0 19 217-235 28-46 (250)
132 >2w58_A DNAI, primosome compon 82.5 0.49 1.4E-05 26.5 1.1 19 219-237 55-73 (202)
133 >2it1_A 362AA long hypothetica 82.5 0.52 1.5E-05 26.3 1.2 59 348-418 131-192 (231)
134 >2j41_A Guanylate kinase; GMP, 82.4 0.52 1.6E-05 26.2 1.3 19 218-236 6-24 (158)
135 >1e4v_A Adenylate kinase; tran 82.4 0.42 1.2E-05 26.9 0.8 17 221-237 3-19 (214)
136 >2onk_A Molybdate/tungstate AB 82.4 0.49 1.5E-05 26.4 1.1 58 348-417 124-184 (228)
137 >3cmw_A Protein RECA, recombin 82.3 0.58 1.7E-05 25.9 1.4 25 395-419 139-163 (279)
138 >3ch4_B Pmkase, phosphomevalon 82.3 0.68 2E-05 25.5 1.8 21 217-237 10-30 (202)
139 >2ghi_A Transport protein; mul 82.2 0.15 4.6E-06 29.8 -1.5 20 218-237 46-65 (260)
140 >3d8b_A Fidgetin-like protein 82.1 0.44 1.3E-05 26.7 0.8 47 185-237 90-136 (268)
141 >1qzx_A SRP54, signal recognit 82.1 0.67 2E-05 25.5 1.7 22 216-237 5-26 (193)
142 >1r6b_X CLPA protein; AAA+, N- 82.1 0.44 1.3E-05 26.8 0.7 19 219-237 50-68 (213)
143 >3foz_A TRNA delta(2)-isopente 82.1 0.57 1.7E-05 26.0 1.3 21 217-237 9-29 (232)
144 >1g8p_A Magnesium-chelatase 38 81.8 0.52 1.5E-05 26.3 1.0 19 219-237 46-64 (218)
145 >1d2n_A N-ethylmaleimide-sensi 81.6 0.5 1.5E-05 26.4 0.9 19 219-237 65-83 (196)
146 >1yqt_A RNAse L inhibitor; ATP 81.4 0.63 1.9E-05 25.7 1.4 47 215-262 34-88 (213)
147 >1z47_A CYSA, putative ABC-tra 81.4 0.54 1.6E-05 26.2 1.0 40 374-416 160-202 (237)
148 >1szp_A DNA repair protein RAD 81.4 0.55 1.6E-05 26.1 1.0 20 218-237 18-37 (240)
149 >3cmu_A Protein RECA, recombin 81.4 0.91 2.7E-05 24.6 2.2 20 218-237 27-46 (278)
150 >1sxj_B Activator 1 37 kDa sub 81.3 0.1 3E-06 30.9 -2.7 26 219-244 43-68 (166)
151 >1e32_A P97; membrane fusion; 81.3 0.52 1.5E-05 26.3 0.9 47 186-237 14-60 (174)
152 >1uj2_A Uridine-cytidine kinas 81.2 0.67 2E-05 25.5 1.5 61 219-279 23-103 (188)
153 >2nq2_C Hypothetical ABC trans 81.1 0.6 1.8E-05 25.9 1.1 31 204-236 19-49 (214)
154 >3cmu_A Protein RECA, recombin 81.0 0.52 1.5E-05 26.3 0.8 20 218-237 27-46 (278)
155 >2olj_A Amino acid ABC transpo 81.0 0.63 1.9E-05 25.7 1.2 56 349-416 158-215 (263)
156 >3a00_A Guanylate kinase, GMP 80.9 0.52 1.5E-05 26.2 0.8 18 219-236 2-19 (186)
157 >3eie_A Vacuolar protein sorti 80.8 0.56 1.6E-05 26.1 0.9 47 185-237 24-70 (204)
158 >3b85_A Phosphate starvation-i 80.8 0.59 1.7E-05 25.9 1.0 25 219-243 23-47 (194)
159 >3cmw_A Protein RECA, recombin 80.7 0.71 2.1E-05 25.3 1.4 20 218-237 27-46 (279)
160 >1e9r_A Conjugal transfer prot 80.6 1.7 5.1E-05 22.8 3.4 54 386-447 175-228 (274)
161 >2chg_A Replication factor C s 80.5 0.53 1.6E-05 26.2 0.7 19 219-237 39-57 (160)
162 >2cvh_A DNA repair and recombi 80.5 0.55 1.6E-05 26.1 0.8 20 218-237 20-39 (220)
163 >2yz2_A Putative ABC transport 80.3 0.69 2E-05 25.5 1.2 21 217-237 32-52 (266)
164 >1vpl_A ABC transporter, ATP-b 80.3 0.69 2E-05 25.5 1.2 20 217-236 40-59 (191)
165 >2chq_A Replication factor C s 80.3 0.53 1.6E-05 26.2 0.7 19 219-237 39-57 (160)
166 >2qp9_X Vacuolar protein sorti 80.2 0.55 1.6E-05 26.1 0.7 47 185-237 57-103 (237)
167 >3cmu_A Protein RECA, recombin 80.0 0.63 1.9E-05 25.7 1.0 20 218-237 34-53 (286)
168 >1b0u_A Histidine permease; AB 79.9 0.72 2.1E-05 25.3 1.2 55 350-416 153-209 (262)
169 >2bbs_A Cystic fibrosis transm 79.7 0.8 2.4E-05 25.0 1.4 20 218-237 64-83 (290)
170 >2pcj_A ABC transporter, lipop 79.6 0.73 2.2E-05 25.3 1.2 57 349-417 139-197 (224)
171 >1iy2_A ATP-dependent metallop 79.6 0.64 1.9E-05 25.7 0.9 47 185-237 46-92 (210)
172 >2f1r_A Molybdopterin-guanine 79.6 0.52 1.5E-05 26.3 0.4 37 329-365 74-110 (121)
173 >2iut_A DNA translocase FTSK; 79.6 0.62 1.8E-05 25.8 0.8 18 218-235 32-49 (392)
174 >1rj9_A FTSY, signal recogniti 79.6 0.68 2E-05 25.5 1.0 21 217-237 6-26 (198)
175 >3bk7_A ABC transporter ATP-bi 79.5 0.72 2.1E-05 25.3 1.1 20 216-236 35-54 (226)
176 >1jjv_A Dephospho-COA kinase; 79.5 0.6 1.8E-05 25.8 0.7 18 220-237 4-21 (206)
177 >3cmu_A Protein RECA, recombin 79.5 0.63 1.8E-05 25.7 0.8 20 218-237 27-46 (281)
178 >2yyz_A Sugar ABC transporter, 79.4 0.76 2.3E-05 25.2 1.2 58 349-418 132-192 (225)
179 >3f9v_A Minichromosome mainten 79.4 0.66 2E-05 25.6 0.9 17 221-237 3-19 (150)
180 >3eph_A TRNA isopentenyltransf 79.3 0.67 2E-05 25.5 0.9 51 394-448 203-258 (270)
181 >1odf_A YGR205W, hypothetical 79.3 0.56 1.7E-05 26.1 0.5 44 219-262 32-83 (211)
182 >2ius_A DNA translocase FTSK; 79.3 0.64 1.9E-05 25.6 0.8 24 210-235 26-49 (377)
183 >1u94_A RECA protein, recombin 79.1 0.66 1.9E-05 25.6 0.8 20 218-237 27-46 (237)
184 >3cmw_A Protein RECA, recombin 79.1 0.66 1.9E-05 25.6 0.8 20 218-237 27-46 (237)
185 >3cmu_A Protein RECA, recombin 79.1 0.66 1.9E-05 25.6 0.8 20 218-237 27-46 (237)
186 >1g6h_A High-affinity branched 79.0 0.7 2.1E-05 25.4 1.0 20 217-236 32-51 (179)
187 >1yqt_A RNAse L inhibitor; ATP 78.8 0.8 2.4E-05 25.0 1.2 96 347-458 155-269 (276)
188 >3fb4_A Adenylate kinase; psyc 78.8 0.61 1.8E-05 25.8 0.6 17 221-237 3-19 (169)
189 >3d31_A Sulfate/molybdate ABC 78.7 0.7 2.1E-05 25.4 0.9 25 210-236 20-44 (224)
190 >2ocp_A DGK, deoxyguanosine ki 78.7 0.71 2.1E-05 25.4 0.9 19 219-237 3-21 (241)
191 >2faf_A Phosphoenolpyruvate ca 78.6 4.5 0.00013 20.0 12.5 160 331-502 97-269 (291)
192 >2pjz_A Hypothetical protein S 78.5 0.8 2.4E-05 25.0 1.1 57 347-416 125-181 (263)
193 >3d3q_A TRNA delta(2)-isopente 78.5 0.79 2.3E-05 25.1 1.1 21 217-237 6-26 (182)
194 >2ihy_A ABC transporter, ATP-b 78.5 0.75 2.2E-05 25.2 1.0 52 347-410 158-211 (249)
195 >2h92_A Cytidylate kinase; ros 78.4 0.67 2E-05 25.5 0.7 19 219-237 4-22 (135)
196 >1nlf_A Regulatory protein REP 78.4 0.82 2.4E-05 25.0 1.1 20 218-237 8-27 (257)
197 >3cmw_A Protein RECA, recombin 78.3 0.71 2.1E-05 25.3 0.8 25 395-419 135-159 (274)
198 >3gfo_A Cobalt import ATP-bind 78.3 0.75 2.2E-05 25.2 0.9 59 347-417 140-201 (230)
199 >1lvg_A Guanylate kinase, GMP 78.2 0.7 2.1E-05 25.4 0.7 19 218-236 4-22 (198)
200 >2dhr_A FTSH; AAA+ protein, he 78.2 2.5 7.3E-05 21.8 3.5 47 184-236 36-82 (200)
201 >2eyu_A Twitching motility pro 78.0 0.76 2.2E-05 25.2 0.9 18 219-236 26-43 (261)
202 >1ixz_A ATP-dependent metallop 78.0 0.76 2.3E-05 25.2 0.9 46 185-236 22-67 (185)
203 >2hyd_A ABC transporter homolo 77.8 0.91 2.7E-05 24.6 1.2 20 218-237 39-58 (179)
204 >2cbz_A Multidrug resistance-a 77.7 0.93 2.7E-05 24.6 1.2 20 218-237 31-50 (237)
205 >2r44_A Uncharacterized protei 77.6 0.59 1.8E-05 25.9 0.2 19 219-237 47-65 (226)
206 >3exa_A TRNA delta(2)-isopente 77.6 0.94 2.8E-05 24.6 1.2 20 218-237 3-22 (240)
207 >2v9p_A Replication protein E1 77.6 1 3E-05 24.3 1.4 142 218-364 50-196 (229)
208 >2ffh_A Protein (FFH); SRP54, 77.5 1 3E-05 24.4 1.4 19 218-236 6-24 (190)
209 >3bgw_A DNAB-like replicative 77.4 1.1 3.2E-05 24.1 1.5 21 217-237 13-33 (261)
210 >2zu0_C Probable ATP-dependent 77.2 0.87 2.6E-05 24.8 1.0 19 218-236 46-64 (267)
211 >2r6a_A DNAB helicase, replica 77.2 1.1 3.1E-05 24.2 1.4 21 217-237 12-32 (264)
212 >1gtv_A TMK, thymidylate kinas 77.0 0.68 2E-05 25.5 0.4 18 220-237 2-19 (214)
213 >2qgz_A Helicase loader, putat 77.0 1 3E-05 24.3 1.3 20 218-237 152-171 (308)
214 >1sxj_D Activator 1 41 kDa sub 76.9 0.79 2.3E-05 25.1 0.7 20 218-237 58-77 (191)
215 >2pbr_A DTMP kinase, thymidyla 76.9 0.68 2E-05 25.5 0.4 17 221-237 3-19 (195)
216 >4tmk_A Protein (thymidylate k 76.8 0.98 2.9E-05 24.4 1.2 19 219-237 4-22 (213)
217 >2q6t_A DNAB replication FORK 76.8 0.99 2.9E-05 24.4 1.2 20 218-237 22-41 (266)
218 >3b9p_A CG5977-PA, isoform A; 76.8 0.84 2.5E-05 24.9 0.8 46 185-236 27-72 (188)
219 >1sxj_C Activator 1 40 kDa sub 76.8 0.81 2.4E-05 25.0 0.7 22 219-240 47-68 (168)
220 >1v5w_A DMC1, meiotic recombin 76.8 1.1 3.3E-05 24.1 1.4 20 218-237 19-38 (240)
221 >1ye8_A Protein THEP1, hypothe 76.8 0.8 2.4E-05 25.0 0.7 56 359-417 81-137 (178)
222 >2vf7_A UVRA2, excinuclease AB 76.7 0.9 2.7E-05 24.7 1.0 20 219-238 31-50 (201)
223 >1xwi_A SKD1 protein; VPS4B, A 76.7 1.3 3.7E-05 23.7 1.7 46 185-236 18-63 (178)
224 >3bk7_A ABC transporter ATP-bi 76.7 1 3E-05 24.4 1.2 95 347-456 225-337 (346)
225 >1pzn_A RAD51, DNA repair and 76.5 1 3E-05 24.3 1.2 20 218-237 19-38 (237)
226 >3crm_A TRNA delta(2)-isopente 76.4 1 3.1E-05 24.3 1.2 20 218-237 5-24 (239)
227 >1n0w_A DNA repair protein RAD 76.4 0.87 2.6E-05 24.8 0.8 20 218-237 24-43 (243)
228 >1q57_A DNA primase/helicase; 76.1 1.1 3.3E-05 24.1 1.3 21 217-237 11-31 (273)
229 >2qor_A Guanylate kinase; phos 76.0 1 3E-05 24.3 1.1 18 219-236 13-30 (154)
230 >3cmu_A Protein RECA, recombin 76.0 0.9 2.7E-05 24.7 0.8 20 218-237 23-42 (233)
231 >1a5t_A Delta prime, HOLB; zin 75.8 0.95 2.8E-05 24.5 0.9 19 219-237 25-43 (166)
232 >3be4_A Adenylate kinase; mala 75.6 1.1 3.1E-05 24.2 1.1 32 219-250 6-41 (153)
233 >1np6_A Molybdopterin-guanine 75.5 0.98 2.9E-05 24.4 0.9 18 219-236 7-24 (174)
234 >2ewv_A Twitching motility pro 75.5 0.99 2.9E-05 24.4 0.9 19 219-237 13-31 (248)
235 >2ixe_A Antigen peptide transp 75.5 1.2 3.4E-05 24.0 1.2 20 217-236 44-63 (271)
236 >2zr9_A Protein RECA, recombin 75.3 1.1 3.1E-05 24.2 1.0 20 218-237 27-46 (237)
237 3cf2_A P97VCP IN COMPLEX WITH 75.0 1.1 3.3E-05 24.0 1.1 18 219-236 512-529 (806)
238 >1ji0_A ABC transporter; ATP b 75.0 1.1 3.2E-05 24.2 1.0 58 349-418 138-197 (240)
239 >1xjc_A MOBB protein homolog; 74.8 0.9 2.6E-05 24.7 0.5 19 219-237 5-23 (169)
240 >1sgw_A Putative ABC transport 74.6 1.1 3.1E-05 24.2 0.8 19 218-236 35-53 (152)
241 >2oap_1 GSPE-2, type II secret 74.6 1.1 3.2E-05 24.2 0.9 18 220-237 2-19 (186)
242 >1cr0_A DNA primase/helicase; 74.4 1.5 4.5E-05 23.2 1.6 21 217-237 11-31 (273)
243 >1fzq_A ADP-ribosylation facto 74.3 0.92 2.7E-05 24.6 0.5 31 207-237 5-35 (181)
244 >1ls1_A Signal recognition par 74.2 1.5 4.3E-05 23.3 1.5 19 218-236 6-24 (185)
245 >1lv7_A FTSH; alpha/beta domai 74.2 1.1 3.3E-05 24.1 0.9 47 185-237 18-64 (181)
246 >3e70_C DPA, signal recognitio 73.8 1.5 4.5E-05 23.1 1.5 21 217-237 14-34 (200)
247 >2gno_A DNA polymerase III, ga 73.7 1.1 3.2E-05 24.1 0.7 19 219-237 19-37 (140)
248 >2fna_A Conserved hypothetical 73.6 1.3 3.7E-05 23.7 1.1 19 219-237 31-49 (208)
249 >1jr3_A DNA polymerase III sub 73.4 1.1 3.4E-05 24.0 0.8 19 219-237 39-57 (177)
250 >3co5_A Putative two-component 73.3 1.2 3.6E-05 23.8 0.9 21 220-240 3-23 (117)
251 >2get_A Pantothenate kinase; h 73.1 2.3 6.7E-05 22.0 2.2 21 215-235 87-107 (248)
252 >2jeo_A Uridine-cytidine kinas 72.8 1.2 3.5E-05 23.9 0.7 19 219-237 26-44 (181)
253 >2zpa_A Uncharacterized protei 72.8 1.8 5.2E-05 22.7 1.6 19 219-237 27-45 (153)
254 >3b60_A Lipid A export ATP-bin 72.7 1.6 4.8E-05 23.0 1.4 21 216-237 37-57 (181)
255 >3gvx_A Glycerate dehydrogenas 72.7 1.7 5E-05 22.9 1.5 78 391-481 103-180 (181)
256 >1gwn_A RHO-related GTP-bindin 72.7 1.4 4.2E-05 23.4 1.1 38 200-237 10-47 (205)
257 >2p5s_A RAS and EF-hand domain 72.6 1.4 4E-05 23.5 1.0 34 203-236 13-46 (199)
258 >2awn_A Maltose/maltodextrin i 72.5 1.5 4.5E-05 23.2 1.2 26 210-237 23-48 (236)
259 >1p5z_B DCK, deoxycytidine kin 72.5 1.2 3.6E-05 23.8 0.7 21 218-238 24-44 (263)
260 >3g5u_A MCG1178, multidrug res 72.4 1.5 4.6E-05 23.1 1.3 20 217-236 40-59 (266)
261 >1htw_A HI0065; nucleotide-bin 72.1 1.4 4.1E-05 23.5 1.0 38 217-255 32-69 (158)
262 >1vma_A Cell division protein 72.1 1.1 3.3E-05 24.0 0.5 22 216-237 102-123 (306)
263 >2qen_A Walker-type ATPase; un 71.9 1.4 4.2E-05 23.4 1.0 19 219-237 32-50 (202)
264 >2pt7_A CAG-ALFA; ATPase, prot 71.8 1.4 4.1E-05 23.5 0.9 18 219-236 34-51 (192)
265 >3cf0_A Transitional endoplasm 71.6 1.4 4.1E-05 23.4 0.9 48 185-237 21-68 (204)
266 >1cke_A CK, MSSA, protein (cyt 71.2 1.3 4E-05 23.5 0.7 18 219-236 6-23 (143)
267 >3llu_A RAS-related GTP-bindin 71.1 1.5 4.3E-05 23.3 0.9 18 219-236 21-38 (196)
268 >2z43_A DNA repair and recombi 71.0 1.6 4.8E-05 23.0 1.1 22 397-418 147-168 (236)
269 >1j8m_F SRP54, signal recognit 70.8 2 5.8E-05 22.4 1.5 21 217-237 6-26 (193)
270 >3e1s_A Exodeoxyribonuclease V 70.8 1.6 4.8E-05 23.0 1.1 19 218-236 55-73 (215)
271 >2iw3_A Elongation factor 3A; 70.7 1.6 4.7E-05 23.1 1.0 59 345-416 116-174 (227)
272 >1tf7_A KAIC; homohexamer, hex 70.1 1.8 5.2E-05 22.7 1.1 40 384-423 149-190 (254)
273 >3b5x_A Lipid A export ATP-bin 70.1 1.8 5.2E-05 22.8 1.1 19 218-236 46-64 (259)
274 >2wkq_A NPH1-1, RAS-related C3 70.0 1.6 4.7E-05 23.0 0.9 17 220-236 4-20 (179)
275 >1h65_A Chloroplast outer enve 69.9 1.7 5.1E-05 22.8 1.1 18 219-236 40-57 (270)
276 >1njg_A DNA polymerase III sub 69.6 1.6 4.8E-05 23.0 0.9 19 219-237 46-64 (185)
277 >3h4m_A Proteasome-activating 69.2 1.6 4.8E-05 23.0 0.8 47 185-236 23-69 (187)
278 >2npi_A Protein CLP1; CLP1-PCF 68.8 1.9 5.7E-05 22.5 1.1 21 217-237 20-40 (211)
279 >1tue_A Replication protein E1 68.5 2.2 6.4E-05 22.2 1.3 140 218-362 58-203 (212)
280 >1w1w_A Structural maintenance 68.5 1.9 5.5E-05 22.6 1.0 18 219-236 27-44 (232)
281 >2w0m_A SSO2452; RECA, SSPF, u 67.8 1.9 5.5E-05 22.6 0.9 20 218-237 23-42 (235)
282 >3bh0_A DNAB-like replicative 67.7 2.4 7.2E-05 21.8 1.4 21 217-237 18-38 (266)
283 >1ksh_A ARF-like protein 2; sm 67.5 2.2 6.6E-05 22.1 1.2 22 216-237 16-37 (186)
284 >1nij_A Hypothetical protein Y 67.1 4.8 0.00014 19.9 2.9 19 219-237 5-23 (204)
285 >2dr3_A UPF0273 protein PH0284 66.7 2.2 6.5E-05 22.1 1.0 20 218-237 23-42 (247)
286 >2iw3_A Elongation factor 3A; 66.6 1.5 4.3E-05 23.3 0.1 58 347-417 149-206 (237)
287 >1w36_B RECB, exodeoxyribonucl 66.6 2 5.9E-05 22.4 0.8 18 219-236 17-34 (243)
288 >2fg5_A RAB-22B, RAS-related p 66.6 2.1 6.1E-05 22.3 0.9 18 219-236 24-41 (192)
289 >2dpx_A GTP-binding protein RA 66.6 2.1 6.2E-05 22.2 0.9 21 216-236 5-25 (174)
290 >1lnz_A SPO0B-associated GTP-b 66.5 1.8 5.4E-05 22.6 0.6 17 221-237 3-19 (184)
291 >2pze_A Cystic fibrosis transm 66.4 2.1 6.3E-05 22.2 1.0 19 218-236 34-52 (229)
292 >3cnl_A YLQF, putative unchara 66.1 6.6 0.00019 19.0 3.4 20 217-236 98-117 (158)
293 >3a1s_A Iron(II) transport pro 66.0 2 5.9E-05 22.4 0.7 19 219-237 6-24 (173)
294 >2qtf_A Protein HFLX, GTP-bind 65.8 2.2 6.5E-05 22.1 0.9 19 219-237 9-27 (193)
295 >1z0j_A RAB-22, RAS-related pr 65.8 2 6E-05 22.4 0.7 18 219-236 7-24 (170)
296 >2bov_A RAla, RAS-related prot 65.5 2.5 7.4E-05 21.8 1.1 31 207-237 1-33 (206)
297 >2r62_A Cell division protease 65.3 0.92 2.7E-05 24.6 -1.1 47 185-237 17-63 (184)
298 >1svi_A GTP-binding protein YS 65.3 2.3 6.8E-05 22.0 0.9 18 219-236 24-41 (195)
299 >2qag_C Septin-7; cell cycle, 65.1 2.3 6.7E-05 22.0 0.9 18 219-236 32-49 (418)
300 >1f6b_A SAR1; gtpases, N-termi 64.7 2.3 6.7E-05 22.0 0.8 20 218-237 25-44 (198)
301 >1p9r_A General secretion path 64.0 2.5 7.3E-05 21.8 0.9 19 219-237 22-40 (272)
302 >1fx0_B ATP synthase beta chai 63.6 2.1 6.2E-05 22.3 0.5 19 219-237 70-88 (281)
303 >3con_A GTPase NRAS; structura 63.3 2.4 7.1E-05 21.9 0.7 17 220-236 23-39 (190)
304 >2dyk_A GTP-binding protein; G 63.0 2.4 7.2E-05 21.8 0.7 18 220-237 3-20 (161)
305 >2gj8_A MNME, tRNA modificatio 62.9 2.7 7.9E-05 21.6 0.9 18 219-236 5-22 (172)
306 >1qvr_A CLPB protein; coiled c 62.9 2.1 6.1E-05 22.3 0.3 20 218-237 49-68 (218)
307 >3l2o_B F-box only protein 4; 62.8 3.5 0.0001 20.8 1.5 56 177-236 9-64 (216)
308 >1tq4_A IIGP1, interferon-indu 62.7 2.7 8E-05 21.5 0.9 15 221-235 4-18 (197)
309 >2qag_B Septin-6, protein NEDD 62.6 2.9 8.5E-05 21.3 1.0 17 220-236 5-21 (388)
310 >2i1q_A DNA repair and recombi 62.6 3.2 9.6E-05 21.0 1.3 45 396-440 171-215 (258)
311 >1wf3_A GTP-binding protein; G 62.5 2.7 8.1E-05 21.5 0.9 19 219-237 8-26 (179)
312 >1ega_A Protein (GTP-binding p 62.4 2.8 8.2E-05 21.5 0.9 18 219-236 9-26 (181)
313 >2fv8_A H6, RHO-related GTP-bi 62.2 2.8 8.3E-05 21.4 0.9 18 219-236 26-43 (207)
314 >3cbq_A GTP-binding protein RE 62.0 2.6 7.7E-05 21.6 0.7 18 219-236 24-41 (195)
315 >2r6f_A Excinuclease ABC subun 62.0 1.8 5.5E-05 22.6 -0.1 19 219-237 32-50 (204)
316 >1mh1_A RAC1; GTP-binding, GTP 61.9 2.6 7.8E-05 21.6 0.7 18 219-236 6-23 (186)
317 >1tf7_A KAIC; homohexamer, hex 61.8 3.1 9.2E-05 21.1 1.1 20 218-237 27-46 (271)
318 >3dpu_A RAB family protein; ro 61.8 2.6 7.6E-05 21.7 0.7 18 219-236 6-23 (177)
319 >2ged_A SR-beta, signal recogn 61.6 3.4 0.0001 20.9 1.2 21 216-236 46-66 (193)
320 >1z08_A RAS-related protein RA 61.5 2.7 8E-05 21.5 0.7 19 219-237 7-25 (170)
321 >2wjg_A FEOB, ferrous iron tra 61.4 2.7 8E-05 21.5 0.7 19 219-237 8-26 (188)
322 >3bbp_A RAB-6, RAS-related pro 61.3 3 8.8E-05 21.3 0.9 19 219-237 17-35 (211)
323 >2wjy_A Regulator of nonsense 61.2 3.3 9.9E-05 20.9 1.2 17 219-235 51-67 (263)
324 >2hxs_A RAB-26, RAS-related pr 61.2 2.7 8.1E-05 21.5 0.7 18 219-236 7-24 (178)
325 >2gk6_A Regulator of nonsense 61.1 3.3 9.9E-05 20.9 1.1 17 219-235 51-67 (263)
326 >3iqw_A Tail-anchored protein 61.1 4.3 0.00013 20.2 1.7 35 216-250 14-56 (334)
327 >1f5n_A Interferon-induced gua 61.0 3.3 9.8E-05 20.9 1.1 18 219-236 39-56 (312)
328 >2h57_A ADP-ribosylation facto 60.9 3 9E-05 21.2 0.9 18 219-236 22-39 (190)
329 >3gj0_A GTP-binding nuclear pr 60.6 4.7 0.00014 19.9 1.8 32 206-237 2-34 (185)
330 >1z2a_A RAS-related protein RA 60.5 2.6 7.7E-05 21.6 0.5 18 219-236 6-23 (168)
331 >2afh_E Nitrogenase iron prote 60.5 3.7 0.00011 20.6 1.3 40 220-259 4-52 (289)
332 >3ice_A Transcription terminat 60.3 3.5 0.0001 20.8 1.1 19 219-237 34-52 (281)
333 >2ze6_A Isopentenyl transferas 60.3 2.9 8.7E-05 21.3 0.7 18 220-237 3-20 (125)
334 >2erx_A GTP-binding protein DI 60.3 2.9 8.6E-05 21.3 0.7 17 220-236 5-21 (172)
335 >1mky_A Probable GTP-binding p 60.3 3.1 9.3E-05 21.1 0.9 17 220-236 3-19 (173)
336 >1pui_A ENGB, probable GTP-bin 60.1 3.2 9.4E-05 21.0 0.9 20 218-237 26-45 (210)
337 >2nzj_A GTP-binding protein RE 60.0 3 8.8E-05 21.3 0.7 17 220-236 6-22 (175)
338 >1w36_D RECD, exodeoxyribonucl 60.0 3.4 0.0001 20.8 1.0 19 218-236 54-72 (263)
339 >1p6x_A Thymidine kinase; P-lo 59.6 3.1 9.1E-05 21.1 0.7 19 219-237 8-26 (334)
340 >1c1y_A RAS-related protein RA 59.5 3.1 9.1E-05 21.1 0.7 18 220-237 5-22 (167)
341 >3def_A T7I23.11 protein; chlo 59.5 3.6 0.00011 20.7 1.1 18 219-236 37-54 (262)
342 >2ck3_D ATP synthase beta chai 59.3 3 8.8E-05 21.3 0.6 19 219-237 70-88 (280)
343 >2o5v_A DNA replication and re 59.1 3.8 0.00011 20.5 1.2 28 208-236 17-44 (190)
344 >1yzq_A Small GTP binding prot 59.1 3.4 0.0001 20.8 0.9 19 219-237 7-25 (170)
345 >2atx_A Small GTP binding prot 58.7 3.5 0.0001 20.8 0.9 17 220-236 20-36 (194)
346 >2ekl_A D-3-phosphoglycerate d 58.5 4.9 0.00015 19.8 1.6 50 391-450 105-154 (186)
347 >1osn_A Thymidine kinase, VZV- 58.4 4.1 0.00012 20.3 1.2 19 219-237 13-31 (341)
348 >1f2t_A RAD50 ABC-ATPase; DNA 58.4 4.2 0.00012 20.3 1.3 18 218-235 23-40 (138)
349 >1ii8_A RAD50 ABC-ATPase; MRE1 58.4 4.2 0.00012 20.3 1.3 18 218-235 23-40 (138)
350 >3bs4_A Uncharacterized protei 58.2 4.5 0.00013 20.1 1.4 21 217-237 20-40 (260)
351 >3io3_A DEHA2D07832P; chaperon 58.2 3 8.9E-05 21.2 0.5 40 219-258 18-68 (348)
352 >1hyq_A MIND, cell division in 58.2 2.4 7.2E-05 21.8 0.0 36 220-255 4-48 (263)
353 >3ea0_A ATPase, para family; a 58.1 4.6 0.00014 20.0 1.4 33 219-251 5-47 (245)
354 >2a9k_A RAS-related protein RA 58.0 3.7 0.00011 20.6 0.9 33 205-237 3-37 (187)
355 >2gf9_A RAS-related protein RA 58.0 4.2 0.00013 20.2 1.2 22 215-236 19-40 (189)
356 >1iqp_A RFCS; clamp loader, ex 58.0 3.5 0.0001 20.8 0.8 19 219-237 47-65 (168)
357 >1j4a_A D-LDH, D-lactate dehyd 57.8 6.4 0.00019 19.1 2.1 49 391-449 105-153 (197)
358 >1u0j_A DNA replication protei 57.8 3.4 0.0001 20.8 0.7 69 218-289 41-109 (204)
359 >1cp2_A CP2, nitrogenase iron 57.7 4.4 0.00013 20.1 1.3 40 220-259 3-51 (269)
360 >1ek0_A Protein (GTP-binding p 57.7 3.4 0.0001 20.8 0.7 17 220-236 5-21 (170)
361 >1wms_A RAB-9, RAB9, RAS-relat 57.7 3.4 0.0001 20.8 0.7 18 220-237 9-26 (177)
362 >2fn4_A P23, RAS-related prote 57.6 5.1 0.00015 19.7 1.6 21 217-237 8-28 (181)
363 >3i8s_A Ferrous iron transport 57.6 4 0.00012 20.4 1.1 17 219-235 4-20 (188)
364 >3c5c_A RAS-like protein 12; G 57.5 3.5 0.0001 20.8 0.7 18 219-236 22-39 (187)
365 >1g16_A RAS-related protein SE 57.4 3.8 0.00011 20.5 0.9 17 220-236 5-21 (170)
366 >2hjg_A GTP-binding protein EN 57.3 4 0.00012 20.4 1.0 18 219-236 4-21 (167)
367 >3bwd_D RAC-like GTP-binding p 57.2 4.3 0.00013 20.2 1.1 20 218-237 8-27 (182)
368 >3euj_A Chromosome partition p 57.2 4.2 0.00013 20.2 1.1 17 219-235 30-46 (281)
369 >1m2o_B GTP binding, GTP-bindi 57.2 4.2 0.00012 20.3 1.1 19 219-237 24-42 (190)
370 >1zd9_A ADP-ribosylation facto 57.0 3.7 0.00011 20.6 0.8 18 219-236 23-40 (188)
371 >2www_A Methylmalonic aciduria 56.9 5.6 0.00017 19.4 1.7 20 217-236 73-92 (262)
372 >2e87_A Hypothetical protein P 56.6 4 0.00012 20.4 0.9 19 219-237 6-24 (195)
373 >3iby_A Ferrous iron transport 56.4 4 0.00012 20.4 0.9 17 221-237 4-20 (173)
374 >3ihw_A Centg3; RAS, centaurin 56.4 3.7 0.00011 20.6 0.7 18 220-237 22-39 (184)
375 >2o52_A RAS-related protein RA 56.3 4.2 0.00012 20.3 1.0 19 219-237 26-44 (200)
376 >1nrj_B SR-beta, signal recogn 56.1 4.8 0.00014 19.9 1.3 22 216-237 10-31 (218)
377 >2woo_A ATPase GET3; tail-anch 56.0 3.5 0.0001 20.7 0.6 43 219-261 19-70 (329)
378 >2gza_A Type IV secretion syst 55.9 4.2 0.00012 20.2 0.9 19 219-237 33-51 (218)
379 >1e2k_A Thymidine kinase; tran 55.7 3.1 9.1E-05 21.1 0.2 36 219-254 5-47 (331)
380 >2dpy_A FLII, flagellum-specif 55.5 5.1 0.00015 19.7 1.3 19 219-237 74-92 (276)
381 >3gee_A MNME, tRNA modificatio 55.5 4.2 0.00013 20.2 0.9 19 219-237 12-30 (180)
382 >1moz_A ARL1, ADP-ribosylation 55.2 3.8 0.00011 20.6 0.6 21 217-237 17-37 (183)
383 >2zci_A Phosphoenolpyruvate ca 55.2 14 0.0004 16.9 7.4 235 191-499 7-268 (294)
384 >2r9v_A ATP synthase subunit a 55.1 3.5 0.0001 20.8 0.4 19 219-237 70-88 (276)
385 >2qu8_A Putative nucleolar GTP 55.0 5.7 0.00017 19.4 1.5 21 217-237 28-48 (228)
386 >3cph_A RAS-related protein SE 54.9 4.1 0.00012 20.3 0.7 17 220-236 22-38 (213)
387 >3i4l_A A-type ATP synthase ca 54.9 4.3 0.00013 20.2 0.8 19 219-237 140-158 (352)
388 >2j6i_A Formate dehydrogenase; 54.7 4.9 0.00015 19.8 1.1 49 391-449 112-160 (196)
389 >2fu5_C RAS-related protein RA 54.4 5.3 0.00016 19.6 1.2 19 219-237 9-27 (183)
390 >2atv_A RERG, RAS-like estroge 54.3 4.2 0.00012 20.2 0.7 35 203-237 9-47 (196)
391 >2obl_A ESCN; ATPase, hydrolas 54.1 4.1 0.00012 20.3 0.6 19 219-237 72-90 (271)
392 >2bcg_Y Protein YP2, GTP-bindi 54.1 4.6 0.00014 20.0 0.9 18 219-236 9-26 (206)
393 >2p67_A LAO/AO transport syste 54.0 5 0.00015 19.7 1.1 18 218-235 56-73 (265)
394 >1zj6_A ADP-ribosylation facto 53.8 4.7 0.00014 19.9 0.9 21 217-237 15-35 (187)
395 >2j28_9 Signal recognition par 53.7 7.9 0.00023 18.4 2.0 18 218-235 8-25 (239)
396 >1xzp_A Probable tRNA modifica 53.7 3.2 9.6E-05 21.0 0.0 17 220-236 3-19 (169)
397 >3dz8_A RAS-related protein RA 53.6 4.8 0.00014 19.9 0.9 19 219-237 24-42 (191)
398 >2w2k_A D-mandelate dehydrogen 53.5 9.2 0.00027 18.0 2.3 49 391-449 117-165 (195)
399 >1z06_A RAS-related protein RA 53.4 4.4 0.00013 20.1 0.7 16 220-235 22-37 (189)
400 >3iev_A GTP-binding protein ER 53.4 4.8 0.00014 19.9 0.9 17 220-236 12-28 (204)
401 >2wji_A Ferrous iron transport 53.1 4.9 0.00014 19.8 0.9 18 219-236 4-21 (165)
402 >2hjg_A GTP-binding protein EN 53.0 4.6 0.00013 20.0 0.7 18 219-236 9-26 (186)
403 >2j0v_A RAC-like GTP-binding p 52.8 7.3 0.00022 18.7 1.7 24 213-236 4-27 (212)
404 >2g3y_A GTP-binding protein GE 52.6 4.7 0.00014 20.0 0.7 17 220-236 39-55 (211)
405 >1u8z_A RAS-related protein RA 52.6 4.2 0.00013 20.2 0.5 17 220-236 6-22 (168)
406 >1xtq_A GTP-binding protein RH 52.6 5.1 0.00015 19.7 0.9 19 219-237 7-25 (177)
407 >1xdw_A NAD+-dependent (R)-2-h 52.2 5.8 0.00017 19.3 1.2 49 391-449 105-153 (198)
408 >2iwr_A Centaurin gamma 1; ANK 52.1 4.8 0.00014 19.9 0.7 19 219-237 8-26 (178)
409 >2fh5_B SR-beta, signal recogn 52.0 4.8 0.00014 19.8 0.7 19 218-236 7-25 (214)
410 >2h17_A ADP-ribosylation facto 51.9 5 0.00015 19.7 0.8 19 219-237 22-40 (181)
411 >3igf_A ALL4481 protein; two-d 51.9 4.4 0.00013 20.1 0.5 30 220-249 4-42 (297)
412 >1r8s_A ADP-ribosylation facto 51.9 4.9 0.00014 19.8 0.7 16 221-236 3-18 (164)
413 >1mky_A Probable GTP-binding p 51.7 4.9 0.00015 19.8 0.7 18 219-236 8-25 (186)
414 >2is6_A DNA helicase II; hydro 51.4 5.3 0.00016 19.6 0.8 19 219-237 23-41 (201)
415 >2hf9_A Probable hydrogenase n 51.2 5.9 0.00017 19.3 1.1 19 218-236 38-56 (226)
416 >2woj_A ATPase GET3; tail-anch 51.2 6.2 0.00018 19.1 1.2 33 219-251 18-61 (354)
417 >3dl0_A Adenylate kinase; phos 51.0 4.8 0.00014 19.9 0.6 46 326-371 102-153 (171)
418 >1sky_E F1-ATPase, F1-ATP synt 51.0 4.6 0.00014 20.0 0.5 20 219-238 66-85 (270)
419 >3geh_A MNME, tRNA modificatio 50.7 5.7 0.00017 19.4 0.9 19 219-237 12-30 (177)
420 >1m7b_A RND3/RHOE small GTP-bi 50.7 5.7 0.00017 19.4 0.9 19 219-237 8-26 (184)
421 >2ce2_X GTPase HRAS; signaling 50.5 5.7 0.00017 19.4 0.9 17 220-236 5-21 (166)
422 >2cxx_A Probable GTP-binding p 50.5 6.3 0.00019 19.1 1.1 18 220-237 3-20 (190)
423 >2c1l_A Restriction endonuclea 50.4 8.3 0.00025 18.3 1.7 33 321-353 30-62 (174)
424 >1kao_A RAP2A; GTP-binding pro 50.1 5.4 0.00016 19.5 0.7 19 219-237 4-22 (167)
425 >1r2q_A RAS-related protein RA 50.1 5.4 0.00016 19.5 0.7 18 220-237 8-25 (170)
426 >3end_A Light-independent prot 49.9 7.7 0.00023 18.5 1.5 36 212-247 35-78 (307)
427 >1vr0_A Probable 2-phosphosulf 49.8 16 0.00049 16.3 5.3 41 397-444 51-94 (122)
428 >1wcv_1 SOJ, segregation prote 49.2 5.6 0.00016 19.4 0.7 31 219-249 7-46 (257)
429 >2efe_B Small GTP-binding prot 48.8 5.8 0.00017 19.3 0.7 19 219-237 13-31 (181)
430 >2il1_A RAB12; G-protein, GDP, 48.8 6.4 0.00019 19.0 0.9 25 212-236 20-44 (192)
431 >2bbw_A Adenylate kinase 4, AK 48.6 5.5 0.00016 19.5 0.6 19 219-237 28-46 (182)
432 >2j1l_A RHO-related GTP-bindin 48.6 7.4 0.00022 18.6 1.2 22 216-237 32-53 (214)
433 >2qe7_A ATP synthase subunit a 48.3 6.5 0.00019 19.0 0.9 20 219-238 70-89 (275)
434 >2a5j_A RAS-related protein RA 48.3 7.4 0.00022 18.6 1.2 18 219-236 22-39 (191)
435 >1ihu_A Arsenical pump-driving 48.3 9.5 0.00028 17.9 1.7 29 219-247 8-45 (303)
436 >2ck3_A ATP synthase alpha cha 48.1 4.7 0.00014 19.9 0.2 19 219-237 71-89 (288)
437 >1upt_A ARL1, ADP-ribosylation 47.7 8.8 0.00026 18.1 1.5 21 217-237 6-26 (171)
438 >2gcg_A Glyoxylate reductase/h 47.6 7.9 0.00023 18.4 1.2 50 391-450 111-160 (190)
439 >3clv_A RAB5 protein, putative 47.6 5.6 0.00017 19.4 0.5 19 219-237 8-26 (208)
440 >1dxy_A D-2-hydroxyisocaproate 47.6 12 0.00034 17.3 2.1 87 353-449 56-153 (197)
441 >1gdh_A D-glycerate dehydrogen 47.5 7.7 0.00023 18.5 1.2 49 391-449 112-160 (190)
442 >1mx3_A CTBP1, C-terminal bind 47.4 6.5 0.00019 19.0 0.8 51 391-451 115-165 (195)
443 >2rex_B RHO-related GTP-bindin 47.3 7.6 0.00023 18.5 1.1 22 215-236 7-28 (197)
444 >2gco_A H9, RHO-related GTP-bi 47.0 5.4 0.00016 19.6 0.3 17 220-236 27-43 (201)
445 >1g3q_A MIND ATPase, cell divi 46.9 7.6 0.00022 18.5 1.1 32 220-251 4-44 (237)
446 >2og2_A Putative signal recogn 46.9 8.9 0.00026 18.1 1.4 19 218-236 8-26 (200)
447 >3b9q_A Chloroplast SRP recept 46.7 8.9 0.00026 18.1 1.4 19 218-236 8-26 (200)
448 >1ky3_A GTP-binding protein YP 46.3 6.7 0.0002 18.9 0.7 18 219-236 9-26 (182)
449 >1fx0_A ATP synthase alpha cha 45.8 4.4 0.00013 20.1 -0.3 20 219-238 70-89 (277)
450 >1xew_X SMC protein; structura 45.5 9.7 0.00029 17.8 1.4 20 218-237 26-45 (139)
451 >2b6h_A ADP-ribosylation facto 45.4 13 0.00037 17.1 2.0 41 196-236 6-47 (192)
452 >3ba1_A HPPR, hydroxyphenylpyr 45.4 10 0.0003 17.7 1.5 49 391-449 105-153 (183)
453 >2qmo_A Dethiobiotin synthetas 45.2 10 0.00031 17.7 1.5 29 219-247 2-39 (220)
454 >1vg8_A RAS-related protein RA 45.1 7.2 0.00021 18.7 0.7 18 219-236 9-26 (207)
455 >1uaa_A REP helicase, protein 45.0 6.8 0.0002 18.9 0.6 18 219-236 16-33 (195)
456 >2g6b_A RAS-related protein RA 44.9 7.3 0.00022 18.7 0.7 18 219-236 11-28 (180)
457 >1sc6_A PGDH, D-3-phosphoglyce 44.7 12 0.00035 17.3 1.8 50 391-450 105-154 (188)
458 >3cwq_A Para family chromosome 44.6 4.8 0.00014 19.9 -0.3 16 222-237 5-20 (209)
459 >3gg9_A D-3-phosphoglycerate d 44.4 4.8 0.00014 19.9 -0.3 49 391-449 116-164 (195)
460 >1udx_A The GTP-binding protei 43.7 7.8 0.00023 18.5 0.7 16 221-236 3-18 (177)
461 >2q3h_A RAS homolog gene famil 43.6 9.4 0.00028 17.9 1.1 22 216-237 18-39 (201)
462 >2hje_A Autoinducer 2 sensor k 43.4 13 0.00038 17.0 1.8 33 50-86 1-37 (84)
463 >1yrb_A ATP(GTP)binding protei 43.0 8.8 0.00026 18.1 0.9 19 219-237 15-33 (262)
464 >2nac_A NAD-dependent formate 42.1 12 0.00035 17.3 1.4 50 391-450 111-160 (190)
465 >1z6t_A APAF-1, apoptotic prot 42.1 9.2 0.00027 18.0 0.9 19 219-237 50-68 (187)
466 >3kbo_A Glyoxylate/hydroxypyru 42.0 14 0.00043 16.7 1.9 49 391-449 106-154 (185)
467 >2cuk_A Glycerate dehydrogenas 42.0 7.7 0.00023 18.5 0.5 49 391-449 105-153 (183)
468 >1vp8_A Hypothetical protein A 41.7 9.2 0.00027 18.0 0.8 14 223-236 161-174 (201)
469 >1zbd_A Rabphilin-3A; G protei 41.7 8.7 0.00026 18.1 0.7 18 220-237 10-27 (203)
470 >3cio_A ETK, tyrosine-protein 41.5 15 0.00044 16.6 1.9 30 218-247 104-142 (299)
471 >2gf0_A GTP-binding protein DI 41.3 9.7 0.00029 17.8 0.9 19 219-237 9-27 (199)
472 >2c61_A A-type ATP synthase no 41.3 5.4 0.00016 19.5 -0.4 19 219-237 68-86 (280)
473 >3dzd_A Transcriptional regula 41.0 9.1 0.00027 18.0 0.7 18 219-236 25-42 (174)
474 >1fx0_B ATP synthase beta chai 41.0 17 0.00052 16.2 2.2 49 404-455 48-96 (121)
475 >2ga8_A Hypothetical 39.9 kDa 40.5 10 0.0003 17.7 0.9 16 220-235 26-41 (359)
476 >2dbq_A Glyoxylate reductase; 40.3 12 0.00034 17.3 1.2 49 391-449 114-162 (192)
477 >1z0f_A RAB14, member RAS onco 40.3 12 0.00035 17.3 1.2 31 206-236 2-33 (179)
478 >2zej_A Dardarin, leucine-rich 40.2 9.2 0.00027 18.0 0.6 18 220-237 4-21 (72)
479 >3fkq_A NTRC-like two-domain p 39.4 15 0.00044 16.6 1.6 33 219-251 6-47 (235)
480 >2h5e_A Peptide chain release 39.4 12 0.00034 17.3 1.1 17 219-235 14-30 (207)
481 >1ygy_A PGDH, D-3-phosphoglyce 39.2 12 0.00035 17.3 1.1 49 391-449 107-155 (185)
482 >3k5p_A D-3-phosphoglycerate d 39.1 24 0.00071 15.2 2.8 49 391-449 105-153 (188)
483 >3ec1_A YQEH GTPase; atnos1, a 39.1 10 0.0003 17.7 0.7 18 219-236 163-180 (234)
484 >2qm8_A GTPase/ATPase; G prote 38.8 11 0.00033 17.5 0.9 19 219-237 56-74 (337)
485 >1x1r_A RAS-related protein M- 38.5 11 0.00031 17.6 0.7 18 219-236 14-31 (178)
486 >1pjr_A PCRA; DNA repair, DNA 38.4 12 0.00036 17.2 1.0 20 219-238 25-44 (200)
487 >3l0i_B RAS-related protein RA 38.3 18 0.00053 16.1 1.9 26 212-237 27-52 (199)
488 >1byi_A Dethiobiotin synthase; 38.1 20 0.00061 15.7 2.1 32 220-251 3-43 (224)
489 >1ghp_A Beta-lactamase, penici 38.1 25 0.00073 15.1 2.9 16 71-86 33-48 (145)
490 >3ez9_A Para; DNA binding, win 37.9 11 0.00033 17.4 0.8 40 468-507 253-295 (298)
491 >2bme_A RAB4A, RAS-related pro 37.6 12 0.00035 17.2 0.9 18 220-237 12-29 (186)
492 >3bfv_A CAPA1, CAPB2, membrane 37.6 16 0.00048 16.3 1.6 41 218-258 82-132 (271)
493 >3gqb_B V-type ATP synthase be 37.6 6.4 0.00019 19.0 -0.5 21 219-239 69-89 (288)
494 >2o4c_A Erythronate-4-phosphat 37.5 25 0.00075 15.1 3.2 49 401-462 99-147 (167)
495 >2j9r_A Thymidine kinase; TK1, 37.3 16 0.00047 16.4 1.5 18 219-236 29-46 (167)
496 >1aky_A Adenylate kinase; ATP: 37.0 11 0.00032 17.6 0.6 18 220-237 6-23 (158)
497 >2cjw_A GTP-binding protein GE 36.8 12 0.00034 17.3 0.7 19 219-237 7-25 (192)
498 >3evt_A Phosphoglycerate dehyd 36.8 18 0.00052 16.1 1.6 87 354-450 58-157 (190)
499 >2g76_A 3-PGDH, D-3-phosphogly 36.7 13 0.00037 17.1 0.9 49 391-449 107-155 (185)
500 >1puj_A YLQF, conserved hypoth 36.6 18 0.00053 16.1 1.6 18 218-235 120-137 (177)
No 1
>>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus HB8} (A:1-209,A:253-338)
Probab=100.00 E-value=0 Score=778.68 Aligned_cols=286 Identities=41% Similarity=0.703 Sum_probs=279.7
Q ss_pred CCCCCCCCCCCEEECCCHHHHHHHHHHHCCCEECCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCCC-CCCCCHHHH
Q ss_conf 9323786822046279889999999972883882685489856876568713223616886544345767-875888999
Q gi|254780826|r 1 MEKFDLEGSSRVYRNLSTSRLYEESIRREKTILTCDGALRALTGQHTGRSAFDKFIVRDSHTENDVFWEN-NKYISPADF 79 (509)
Q Consensus 1 L~~~Gi~~~~~v~~Nls~~eL~e~ai~~~eG~lt~~GAL~v~TG~~TGRSPkDKfIV~d~~t~d~I~Wg~-N~~i~~e~F 79 (509)
|+.+||+++++||||||+++|+|+|++|+||++++.|||+|+||++|||||+|||||+++.|+++||||+ ||||++++|
T Consensus 4 L~~~Gi~~~~~v~~Nls~~eL~e~ai~r~eG~~t~~GaL~v~TG~~TGRSPkDKfIV~~~~t~d~I~Wg~vN~pis~e~f 83 (295)
T 1j3b_A 4 LEALGIHPKKRVFWNTVSPVLVEHTLLRGEGLLAHHGPLVVDTTPYTGRSPKDKFVVREPEVEGEIWWGEVNQPFAPEAF 83 (295)
T ss_dssp CGGGTCCCSSCEEESCCHHHHHHHHHHTTSCEECTTSCEEECCTTCCSCCGGGEEEECCTTTTTTSCBTTTBEEECHHHH
T ss_pred HHHCCCCCCCEEEECCCHHHHHHHHHHCCCEEECCCCCEEEECCCCCCCCCCCCEECCCCCCCCCEEECCCCCCCCHHHH
T ss_conf 67649998874897979899999999729918806987898559966889865478079984213200777766899999
Q ss_pred HHHHHHHHHHHCCCCEEEEEEEEECCHHHCCEEEEECCCCHHHHHHHHHCCCC----CCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 99999999986279469974255178323640287228710778999751254----21113444566127645887637
Q gi|254780826|r 80 DTLKADMLDYIKDKDLFLQDLVACPHTKNAISVCVVTQYAWHSLFIRNLLKHK----EDLGAVPNMMSLQVVVLPDFSAD 155 (509)
Q Consensus 80 ~~L~~~v~~yl~~k~lyv~D~~~Gad~~~rl~vRvite~AwhaLF~~nmFirp----~~~e~~~~~pd~tI~~aP~~~~~ 155 (509)
+.|+++|++|+++|++||+|+||||||+||++||||||.||||||++|||||| +++++..|+|||||+++|+|++|
T Consensus 84 ~~L~~~~~~~l~~kdlyv~D~~vGaDp~~rl~vRvItE~Aw~~LF~~nLfirP~~~~~~eel~~~~PdftIi~~P~~~ad 163 (295)
T 1j3b_A 84 EALYQRVVQYLSERDLYVQDLYAGADRRYRLAVRVVTESPWHALFARNMFILPRRFGNDDEVEAFVPGFTVVHAPYFQAV 163 (295)
T ss_dssp HHHHHHHHHHHHTSCEEEEEEEECSSTTTCEEEEEEESCHHHHHHHHHHSBCGGGGC------CCCCSEEEEEETTCCCC
T ss_pred HHHHHHHHHHHHCCCEEEEEEEEECCHHHCEEEEEEEHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCEEEEECCCCCCC
T ss_conf 99999999998369769986578617301212899732677999998516787545532345324887189855667578
Q ss_pred CCCCCCCCCCEEEEEHHCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 42245666616997722193566413678887789999998624107879931245347778702799833543111222
Q gi|254780826|r 156 PNRHGCCSETIIAVDLTAGLILIGGTSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 156 p~~~g~~Se~~i~in~~~k~~lI~GT~YaGEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS 235 (509)
|+.+|++|++||+|||++|++||+||+|||||||||||||||+||+
T Consensus 164 p~~dGl~Setfiiin~~~k~~lI~GT~YaGEiKKsiFTvmnyllPr---------------------------------- 209 (295)
T 1j3b_A 164 PERDGTRSEVFVGISFQRRLVLIVGTKYAGEIKKSIFTVMNYLMPK---------------------------------- 209 (295)
T ss_dssp HHHHCCSSSCEEEEETTTTEEEEESCCCTHHHHHHHHHHHHHHGGG----------------------------------
T ss_pred CCCCCCCCCCEEEECHHCCEEEEECCHHHHHHHHHHHHHHHHHHHH----------------------------------
T ss_conf 4545766641799712018799956378999889999999866665----------------------------------
Q ss_pred CCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCEECCCC-CEECCCCCCCCCEEEEE
Q ss_conf 47886133031102156741234555321101358333513588753011031240057898-11114788676705898
Q gi|254780826|r 236 ASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECG-IPNFKDSSVTENTRAAY 314 (509)
Q Consensus 236 ~d~~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailENV~~d~~~-~~df~d~s~TeNtR~~y 314 (509)
|||+|+|+||||+|||||||||+||+++||+||+|+.+++||||||++|+++ .|||+|.|+|+||||+|
T Consensus 210 ----------~e~~~~~~~v~~~egg~y~k~~~l~~~~ep~i~~a~~~~~a~lenv~~~~~~~~~~~~d~s~t~n~r~~~ 279 (295)
T 1j3b_A 210 ----------DEHGWSEDGVFNFEGGCYAKVIRLSPEHEPLIYKASNQFEAILENVVVNPESRRVQWDDDSKTENTRSSY 279 (295)
T ss_dssp ----------SEEEECSSCEEESCSEEEEECTTCCTTTCHHHHHHHSSTTCEEESCEECTTTCCEETTCCSSCSCCEEEE
T ss_pred ----------CCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEE
T ss_conf ----------5226267867985135887304688555721799997607655665987898734677876677664545
Q ss_pred ECCCCCCCCCCCCCCC
Q ss_conf 6000431000256788
Q gi|254780826|r 315 PLNFIHNHAPQSIGKH 330 (509)
Q Consensus 315 p~~~i~n~~~~~~~~~ 330 (509)
||++|||++.+++++|
T Consensus 280 ~~~~i~~~~~~~~~~~ 295 (295)
T 1j3b_A 280 PIAHLENVVESGVAGH 295 (295)
T ss_dssp EGGGCSSBCTTSEECC
T ss_pred EHHHHCCCCCCCCCCC
T ss_conf 6144005546555788
No 2
>>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A (A:202-276,A:338-532)
Probab=100.00 E-value=0 Score=764.00 Aligned_cols=258 Identities=48% Similarity=0.852 Sum_probs=249.8
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCC
Q ss_conf 88778999999862410787993124534777870279983354311122247886133031102156741234555321
Q gi|254780826|r 185 GEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYA 264 (509)
Q Consensus 185 GEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d~~r~LigDDehgW~d~gvfn~EgGcYa 264 (509)
||||||+|++|||+||.+|+|+||||||+|++++||+||||||||||||||+||+|.|||||||||+|+||||||-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~d~~~~~g~~~tgk~~l~~~~~~~lig~d~~~~~~~~~~~~~~---- 76 (270)
T 1ytm_A 1 GEMKKGMFSMMNFYLPLQGIAAMHCSANTDLEGKNTAIFFGLSGTGKTTLSTDPKRLLIGDDEHGWDDDGVFNFEI---- 76 (270)
T ss_dssp THHHHHHHHHHHHHTGGGTCEEEEEEEEEETTSCSEEEEECCTTSSHHHHHCCTTEEEEESSEEEECSSCEEESCB----
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCEEEECCCCEEEECC----
T ss_conf 9888999999986665358699985415478897159996446553223420677665676136875776065025----
Q ss_pred CCCCCCCCCCHHHHHHHHHCCHHHCCCEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 10135833351358875301103124005789811114788676705898600043100025678872699960267788
Q gi|254780826|r 265 KSINLSKETEPEIFSASCRFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAADAFGV 344 (509)
Q Consensus 265 K~i~Ls~~~EP~I~~aa~~~~ailENV~~d~~~~~df~d~s~TeNtR~~yp~~~i~n~~~~~~~~~p~~iifl~~d~~gv 344 (509)
+||+++|+ ||++|||||||+|||
T Consensus 77 ------------------------------------------------aypi~~I~---------~P~~IifLt~Da~GV 99 (270)
T 1ytm_A 77 ------------------------------------------------VKPVSKAP---------AAKRVIFLSADAFGV 99 (270)
T ss_dssp ------------------------------------------------CCSSSEES---------CEEEEEEEECCTTSC
T ss_pred ------------------------------------------------CCCCCCCC---------CCCCEEEEEECCCCC
T ss_conf ------------------------------------------------35665688---------987313898347666
Q ss_pred CCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCC
Q ss_conf 76044418588999997423245666200012565312100105001568315389999999881980999816746887
Q gi|254780826|r 345 LPPVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGS 424 (509)
Q Consensus 345 lPpvsklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~ 424 (509)
||||||||++|||||||||||+|++|||+|++||++|||+|||+||||+||++||++|+++|++|+++||||||||.|+
T Consensus 100 LPPVsKLt~eQAmy~FLsGytsk~agte~Gv~ep~atfs~cFg~PF~~~~p~~ya~~l~~~i~~~~v~~yLvNTGw~G~- 178 (270)
T 1ytm_A 100 LPPVSILSKEQTKYYFLSGFTAKLAGTERGITEPTPTFSSCFGAAFLTLPPTKYAEVLVKRMEASGAKAYLVNTGWNGT- 178 (270)
T ss_dssp SCSEEECCHHHHHHHHHHCEEEECTTSBTTCCSCEEEECGGGCGGGCCSCHHHHHHHHHHHHHHHTCEEEEEECSBCTT-
T ss_pred CCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC-
T ss_conf 6711011667899998752431036754466678652310345575554817899999988876398299991787878-
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68873207889999999998496024660667887742562079899656497662599899999999999999999987
Q gi|254780826|r 425 YGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPLEVKGVDRKLLNPRDSWNDVEAYDQKMRELLLMFENNAEK 504 (509)
Q Consensus 425 ~g~G~Ri~l~~Tr~ii~ai~~g~l~~~~~~~~~~f~l~iP~~~~gv~~~~l~P~~~w~d~~~Y~~~a~~L~~~F~~Nf~~ 504 (509)
|+||++++||+||+||++|+|++++|+.+|+|||+||++|||||+++|||+++|.|+++|++++++|+++|++||+|
T Consensus 179 ---GkRI~l~~TraiI~aIl~G~l~~~~~~~~~~Fgl~iP~~ipgvp~eildP~~~w~d~~~y~~~~~~La~~F~enf~k 255 (270)
T 1ytm_A 179 ---GKRISIKDTRGIIDAILDGSIDTANTATIPYFNFTVPTELKGVDTKILDPRNTYADASEWEVKAKDLAERFQKNFKK 255 (270)
T ss_dssp ---SSBCCHHHHHHHHHHHHTSGGGGSCEEEETTTTEEEESCCTTSCTGGGSGGGGSSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred ---CCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCEECCCCCCCCCHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---84518899999999996496346632576877854225589988476798575389899999999999999999986
Q ss_pred HHC
Q ss_conf 512
Q gi|254780826|r 505 KQI 507 (509)
Q Consensus 505 ~~~ 507 (509)
|+.
T Consensus 256 f~~ 258 (270)
T 1ytm_A 256 FES 258 (270)
T ss_dssp C--
T ss_pred CCC
T ss_conf 027
No 3
>>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} (A:1-198,A:241-325)
Probab=100.00 E-value=0 Score=757.01 Aligned_cols=277 Identities=34% Similarity=0.569 Sum_probs=270.3
Q ss_pred CCEEECCCHHHHHHHHHH-HCCCEECCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCCC-CCCCCHHHHHHHHHHHH
Q ss_conf 204627988999999997-2883882685489856876568713223616886544345767-87588899999999999
Q gi|254780826|r 10 SRVYRNLSTSRLYEESIR-REKTILTCDGALRALTGQHTGRSAFDKFIVRDSHTENDVFWEN-NKYISPADFDTLKADML 87 (509)
Q Consensus 10 ~~v~~Nls~~eL~e~ai~-~~eG~lt~~GAL~v~TG~~TGRSPkDKfIV~d~~t~d~I~Wg~-N~~i~~e~F~~L~~~v~ 87 (509)
++|||||++++|||+|++ ++||+++++|||+|+||++|||||||||||+|+.++++||||+ ||||+++.|+.|+++|+
T Consensus 2 ~~v~~Nls~~~L~E~al~~~~eG~~t~~GaL~v~TG~~TGRSPkDKfIV~d~~t~d~I~Wg~vN~pis~e~f~~L~~~v~ 81 (283)
T 1ii2_A 2 PTIHRNLLSPELVQWALKIEKDSRLTARGALAVMSYAKTGRSPLDKRIVDTDDVRENVDWGKVNMKLSEESFARVRKIAK 81 (283)
T ss_dssp CEEEESCCHHHHHHHHHHHCTTCEECTTSCEEECCTTCSSBCGGGEEEECCHHHHTTSCBTTTBCEECHHHHHHHHHHHH
T ss_pred CEEECCCCHHHHHHHHHHHCCCEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 84588899899999998627981882786589843887688988747838998402412277667679999999999999
Q ss_pred HHHCCCC-EEEEEEEEECCHHHCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCC-CCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 9862794-6997425517832364028722871077899975125421113444-5661276458876374224566661
Q gi|254780826|r 88 DYIKDKD-LFLQDLVACPHTKNAISVCVVTQYAWHSLFIRNLLKHKEDLGAVPN-MMSLQVVVLPDFSADPNRHGCCSET 165 (509)
Q Consensus 88 ~yl~~k~-lyv~D~~~Gad~~~rl~vRvite~AwhaLF~~nmFirp~~~e~~~~-~pd~tI~~aP~~~~~p~~~g~~Se~ 165 (509)
+||++++ +||+|+||||||+||++||||||.||||||++||||||+++|++.| +|||||+++|+|++||+.+|++|++
T Consensus 82 ~yl~~~d~lyV~D~~vGaD~~~rlkvRvite~Aw~aLF~~nlfirP~~eel~~f~ePdftI~~aP~~~adp~~~Gl~Se~ 161 (283)
T 1ii2_A 82 EFLDTREHLFVVDCFAGHDERYRLKVRVFTTRPYHALFMRDMLIVPTPEELATFGEPDYVIYNAGECKADPSIPGLTSTT 161 (283)
T ss_dssp HHHHTSSEEEEEEEEECSSTTTCEEEEEEESSHHHHHHHHHHSBCCCHHHHHTCCSCSEEEEEETTSCCCTTSTTCCSSC
T ss_pred HHHHCCCCEEEEEEEEECCHHHCEEEEEEECHHHHHHHHHHHCCCCCHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCC
T ss_conf 99841786899987764683123017999714548899873348998578523579876995376634510005788873
Q ss_pred EEEEEHHCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEC
Q ss_conf 69977221935664136788877899999986241078799312453477787027998335431112224788613303
Q gi|254780826|r 166 IIAVDLTAGLILIGGTSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGD 245 (509)
Q Consensus 166 ~i~in~~~k~~lI~GT~YaGEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d~~r~LigD 245 (509)
||++||++|++||+||+|+|||||||||||||+||.+
T Consensus 162 fiiin~~~~~~lI~Gt~YaGEiKKgiFTvmNylLP~r------------------------------------------- 198 (283)
T 1ii2_A 162 CVALNFKTREQVILGTEYAGEMKKGILTVMFELMPQM------------------------------------------- 198 (283)
T ss_dssp EEEEETTTTEEEEESCCCTHHHHHHHHHHHHHHHHHT-------------------------------------------
T ss_pred EEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHC-------------------------------------------
T ss_conf 7999802598999675467788999999974441435-------------------------------------------
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCEEC-CCCCEECCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 1102156741234555321101358333513588753011031240057-898111147886767058986000431000
Q gi|254780826|r 246 DEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVD-ECGIPNFKDSSVTENTRAAYPLNFIHNHAP 324 (509)
Q Consensus 246 DehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailENV~~d-~~~~~df~d~s~TeNtR~~yp~~~i~n~~~ 324 (509)
|||+|+|+||||+|||||||||+||+++||+||+| ++++||||||++| ++|.|||+|.|+|+||||+|||++|||++.
T Consensus 199 ~e~~~~d~~v~~~egg~y~kt~~l~~~~ep~i~~a-~~~~a~lenv~~d~~~~~~~f~~~s~t~n~r~~~~~~~i~~~~~ 277 (283)
T 1ii2_A 199 DEHVWTDRGVFNIEGGCYAKAIGLNPKTEKDIYDA-VRFGAVAENCVLDKRTGEIDFYDESICKNTRVAYPLSHIEGALS 277 (283)
T ss_dssp SCEEECSSCEEESCSEEEEECTTCCTTTCHHHHHT-CSTTCEEESCCBCTTTCSBCTTCCSSCSCCEEEEEGGGSTTCCS
T ss_pred CCCEECCCCEEEECCCEEEECCCCCCCCCCCHHHH-HHHHHHHCCEEEECCCCCCCCCCCCCCCCCCEEEEHHHCCCCCC
T ss_conf 66136588668532634500013585568427999-86633204228957888766667756787527847676546455
Q ss_pred CCCCCC
Q ss_conf 256788
Q gi|254780826|r 325 QSIGKH 330 (509)
Q Consensus 325 ~~~~~~ 330 (509)
+++++|
T Consensus 278 ~~~~~~ 283 (283)
T 1ii2_A 278 KAIAGH 283 (283)
T ss_dssp SCEECC
T ss_pred CCCCCC
T ss_conf 343799
No 4
>>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} (A:1-225,A:283-343)
Probab=100.00 E-value=0 Score=724.38 Aligned_cols=262 Identities=38% Similarity=0.599 Sum_probs=256.0
Q ss_pred CCCCCCCCCCCEEECCCHHHHHHHHHH-----HCCCEECCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCCC-----
Q ss_conf 932378682204627988999999997-----2883882685489856876568713223616886544345767-----
Q gi|254780826|r 1 MEKFDLEGSSRVYRNLSTSRLYEESIR-----REKTILTCDGALRALTGQHTGRSAFDKFIVRDSHTENDVFWEN----- 70 (509)
Q Consensus 1 L~~~Gi~~~~~v~~Nls~~eL~e~ai~-----~~eG~lt~~GAL~v~TG~~TGRSPkDKfIV~d~~t~d~I~Wg~----- 70 (509)
|+.+||+++++|||||++++|+|+|++ |+||+++++|||+|.||+||||||||||||+|+.|+++||||+
T Consensus 12 L~~~Gi~~~~~v~~Nls~~~L~E~Ai~~~~~~r~EG~lt~~GAl~v~TG~~TGRSPkDKfIV~d~~t~~~IwWG~v~~~~ 91 (286)
T 2olr_A 12 LEAYGISDVHDIVYNPSYDLLYQEELDPSLTGYERGVLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDTFWWADKGKGK 91 (286)
T ss_dssp HHHTTCCCCCCEEESCCHHHHHHHHHCTTCCGGGCEEECTTSCEEECCCSCSSCCGGGEEEECSTTTTTTSCCTTSSSSC
T ss_pred HHHCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCCCEEECCCCCCC
T ss_conf 88729998874886899899999998725244564388478877985589778898764782799842334305556666
Q ss_pred --CCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCHHHCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEE
Q ss_conf --875888999999999999862794699742551783236402872287107789997512542111344456612764
Q gi|254780826|r 71 --NKYISPADFDTLKADMLDYIKDKDLFLQDLVACPHTKNAISVCVVTQYAWHSLFIRNLLKHKEDLGAVPNMMSLQVVV 148 (509)
Q Consensus 71 --N~~i~~e~F~~L~~~v~~yl~~k~lyv~D~~~Gad~~~rl~vRvite~AwhaLF~~nmFirp~~~e~~~~~pd~tI~~ 148 (509)
||||+++.|+.|+++|++||++|++||+|+||||||+||++||||||+||||||++||||||+++|++.|+|||||++
T Consensus 92 ~~N~pis~e~F~~L~~~v~~yL~~k~lfV~D~~aGadp~~rl~VRvite~AwhaLF~~nMfIrP~~eEl~~f~PdftIi~ 171 (286)
T 2olr_A 92 NDNKPLSPETWQHLKGLVTRQLSGKRLFVVDAFCGANPDTRLSVRFITEVAWQAHFVKNMFIRPSDEELAGFKPDFIVMN 171 (286)
T ss_dssp CSCEEECHHHHHHHHHHHHHHHTTSCEEEEEEEESSSTTTCEEEEEEESCHHHHHHHHHHSBCCCHHHHHTCCCSEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEEEHHHHHHHHHHHCCCCCCHHHHCCCCCCEEEEC
T ss_conf 67767899999999999999970794799840505681320468996389999999997368877467515598708982
Q ss_pred CCCCC-CCCCCCCCCCCCEEEEEHHCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECC
Q ss_conf 58876-37422456666169977221935664136788877899999986241078799312453477787027998335
Q gi|254780826|r 149 LPDFS-ADPNRHGCCSETIIAVDLTAGLILIGGTSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLS 227 (509)
Q Consensus 149 aP~~~-~~p~~~g~~Se~~i~in~~~k~~lI~GT~YaGEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLS 227 (509)
+|+|+ ++|++||++||+||++||++|+++|+||+|+|||||||||||||+||.
T Consensus 172 aP~f~~adp~~dG~~SetfI~inf~k~i~~I~gt~y~GEiKKsiFsvmnylLP~-------------------------- 225 (286)
T 2olr_A 172 GAKCTNPQWKEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPL-------------------------- 225 (286)
T ss_dssp ETTCCCTTTTTTTCSSSCEEEEETTTTEEEEESCCCTHHHHHHHHHHHHHHTGG--------------------------
T ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHH--------------------------
T ss_conf 663458873347745663688711027899965178999989999999987675--------------------------
Q ss_pred CCCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCEECCCCCEECCCCCCC
Q ss_conf 43111222478861330311021567412345553211013583335135887530110312400578981111478867
Q gi|254780826|r 228 GTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGIPNFKDSSVT 307 (509)
Q Consensus 228 GTGKTTLS~d~~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailENV~~d~~~~~df~d~s~T 307 (509)
||||||||+||++.||+||+| ++++||||||++|++|.|||+|.|+|
T Consensus 226 --------------------------------gg~y~kt~~l~~~~~p~~~~a-~~~~a~lenv~~~~~~~~~f~~~~~t 272 (286)
T 2olr_A 226 --------------------------------GGCYAKTIKLSKEAEPEIYNA-IRRDALLENVTVREDGTIDFDDGSKT 272 (286)
T ss_dssp --------------------------------SEEEEECTTCCTTTSHHHHHT-CSTTCEEESCEECTTSCEETTCCSSC
T ss_pred --------------------------------CCEEEEECCCCCCCCHHHHHH-HHHCCCCCCCEECCCCCEEECCCCCC
T ss_conf --------------------------------531443304575576789988-76241335618906984643477666
Q ss_pred CCEEEEEECCCCCC
Q ss_conf 67058986000431
Q gi|254780826|r 308 ENTRAAYPLNFIHN 321 (509)
Q Consensus 308 eNtR~~yp~~~i~n 321 (509)
+||||+|||++|||
T Consensus 273 ~n~r~~~~~~~i~n 286 (286)
T 2olr_A 273 ENTRVSYPIYHIDN 286 (286)
T ss_dssp SCCEEEEEGGGSSS
T ss_pred CCCCCCCCCCCCCC
T ss_conf 66764556001544
No 5
>>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} (A:226-282,A:344-540)
Probab=100.00 E-value=0 Score=700.69 Aligned_cols=240 Identities=47% Similarity=0.824 Sum_probs=232.9
Q ss_pred CCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 78799312453477787027998335431112224788613303110215674123455532110135833351358875
Q gi|254780826|r 202 RGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSAS 281 (509)
Q Consensus 202 ~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d~~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa 281 (509)
||+||||||||+|+++ |+++|||||||||||||+||+|.|||||||||+|+||||||
T Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 57 (254)
T 2olr_A 1 KGIASMHCSANVGEKG-DVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNFE---------------------- 57 (254)
T ss_dssp GTCEEECEEEEECTTS-CEEEEECSTTSSHHHHHCCTTSEEEESSCEEEETTEEEESC----------------------
T ss_pred CCEEEEEEEECCCCCC-CEEEEEECCCCCCEEEECCCCCCCCCCCEEEECCCCEEEEE----------------------
T ss_conf 1967787640337888-61588720566624786157765113643797489668730----------------------
Q ss_pred HHCCHHHCCCEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHCCHHHHHHHHH
Q ss_conf 30110312400578981111478867670589860004310002567887269996026778876044418588999997
Q gi|254780826|r 282 CRFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYYFL 361 (509)
Q Consensus 282 ~~~~ailENV~~d~~~~~df~d~s~TeNtR~~yp~~~i~n~~~~~~~~~p~~iifl~~d~~gvlPpvsklt~~qa~~~F~ 361 (509)
|++.++.++||++||||+||++|+||||+|||++||||||+
T Consensus 58 ---------------------------------------na~~~~~~~~p~aIv~l~~D~~GvlPPIskLt~~QA~y~Fl 98 (254)
T 2olr_A 58 ---------------------------------------IVKPVSKAGHATKVIFLTADAFGVLPPVSRLTADQTQYHFL 98 (254)
T ss_dssp ---------------------------------------BCCSSSEESCEEEEEEEECCTTSCSCSEEECCHHHHHHHHH
T ss_pred ---------------------------------------CCCCCCCCCCCCEEEEECCCCCCCCCHHHCCCHHHHHHHHH
T ss_conf ---------------------------------------34774447897657862257556546121017789999997
Q ss_pred HHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 42324566620001256531210010500156831538999999988198099981674688768873207889999999
Q gi|254780826|r 362 SGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLK 441 (509)
Q Consensus 362 sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ 441 (509)
||||+|++|||+|++||++|||+|||+||||+||++||++|++||++|+++||||||||.|+ |+||+|++||+||+
T Consensus 99 sGyTaK~aGTE~gv~eP~atFs~cFg~PFl~~~p~~ya~~L~eki~~~~v~vyLvNTGw~G~----GkRI~l~~TraiI~ 174 (254)
T 2olr_A 99 SGFTAKLAGTERGITEPTPTFSACFGAAFLSLHPTQYAEVLVKRMQAAGAQAYLVNTGWNGT----GKRISIKDTRAIID 174 (254)
T ss_dssp HCEEEEETTGGGTCCCEEEEECGGGCGGGCSSCHHHHHHHHHHHHHHHTCEEEEEECSBCTT----SSBCCHHHHHHHHH
T ss_pred HCCHHCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC----CCEECHHHHHHHHH
T ss_conf 36000026777566677652631234441046826799999999987498199993787878----81636699999999
Q ss_pred HHHCCCCCCCCEEECCCCCCCCCCCCCCCCHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 998496024660667887742562079899656497662599899999999999999999987512
Q gi|254780826|r 442 AIFDNSIKSVPYRVDENFGFSVPLEVKGVDRKLLNPRDSWNDVEAYDQKMRELLLMFENNAEKKQI 507 (509)
Q Consensus 442 ai~~g~l~~~~~~~~~~f~l~iP~~~~gv~~~~l~P~~~w~d~~~Y~~~a~~L~~~F~~Nf~~~~~ 507 (509)
||++|+|++++|+.+|+|||+||++|||||+++|||+++|.|+++|++++++|+++|++||+||++
T Consensus 175 aIl~G~L~~~~~~~~~~Fg~~iP~~v~GVp~~iLdP~~~w~d~~~Y~~~~~~La~~F~enf~kf~~ 240 (254)
T 2olr_A 175 AILNGSLDNAETFTLPMFNLAIPTELPGVDTKILDPRNTYASPEQWQEKAETLAKLFIDNFDKYTD 240 (254)
T ss_dssp HHHHTHHHHSCEEEETTTTEEEESCCTTSCGGGGSGGGGSSSHHHHHHHHHHHHHHHHHHHGGGTT
T ss_pred HHHHCCCCCCCEEECCCCCEECCCCCCCCCHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 997097656751577866851346379988576598573699999999999999999999986177
No 6
>>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} (A:199-240,A:326-524)
Probab=100.00 E-value=0 Score=658.82 Aligned_cols=221 Identities=44% Similarity=0.787 Sum_probs=214.0
Q ss_pred CEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 87993124534777870279983354311122247886133031102156741234555321101358333513588753
Q gi|254780826|r 203 GIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASC 282 (509)
Q Consensus 203 g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d~~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~ 282 (509)
+|||||||||+|+++ ||+||||||||||||||+||+|.||||
T Consensus 1 ~v~~mh~s~n~g~~~-~~~~ffglsgtgkttls~d~~r~ligd------------------------------------- 42 (241)
T 1ii2_A 1 NHLCMHASANVGKQG-DVTVFFGLSGTGKTTLSADPHRNLIGD------------------------------------- 42 (241)
T ss_dssp TCEEESEEEEECTTC-CEEEEECCTTSSHHHHHCCTTSEEEES-------------------------------------
T ss_pred CEEEEEEEEEECCCC-CEEEEECCCCCCCCCCCCCCCCCEECC-------------------------------------
T ss_conf 868874002546898-558995246678863322699876778-------------------------------------
Q ss_pred HCCHHHCCCEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHCCHHHHHHHHHH
Q ss_conf 01103124005789811114788676705898600043100025678872699960267788760444185889999974
Q gi|254780826|r 283 RFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYYFLS 362 (509)
Q Consensus 283 ~~~ailENV~~d~~~~~df~d~s~TeNtR~~yp~~~i~n~~~~~~~~~p~~iifl~~d~~gvlPpvsklt~~qa~~~F~s 362 (509)
|++|||||||+|||||||||||++||||||||
T Consensus 43 ------------------------------------------------P~~IifLt~Da~GVLPPVsKLt~~qa~y~Fls 74 (241)
T 1ii2_A 43 ------------------------------------------------PKNVIFLTNDAFGVMPPVARLTSAQAMFWFVM 74 (241)
T ss_dssp ------------------------------------------------EEEEEEEECCTTSCSCSEEEECHHHHHHHHHH
T ss_pred ------------------------------------------------CCEEEEEEECCCCCCCCHHHCCHHHHHHHHHH
T ss_conf ------------------------------------------------86799996046578772320899999999986
Q ss_pred HCCCCCCCCCCCCC-CCCCEEEHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCC-CCCCCHHHHHHHH
Q ss_conf 23245666200012-565312100105001568315389999999881980999816746887688-7320788999999
Q gi|254780826|r 363 GYTAKVAGTEKGVL-KPEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGE-GYRMPLSVTRALL 440 (509)
Q Consensus 363 GyT~k~agte~g~~-ep~~tfs~cFg~PF~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~-G~Ri~l~~Tr~ii 440 (509)
|||+|++|||+|++ ||++|||+|||+|||++||++||++|++||++|+++||||||||+||+||+ |+||+|++||+||
T Consensus 75 GyT~k~agTeag~~~ep~~tfs~cfg~PF~~~~p~~ya~~l~~~i~~~~v~~yLvNTGw~gg~~~~~GkRi~l~~Tr~ii 154 (241)
T 1ii2_A 75 GYTANVPGVEAGGTRTARPIFSSCFGGPFLVRHATFYGEQLAEKMQKHNSRVWLLNTGYAGGRADRGAKRMPLRVTRAII 154 (241)
T ss_dssp CEEEECSSSBTTCCSSCEEEECGGGCGGGCCSCHHHHHHHHHHHHHHHTCEEEEEECSEESSCGGGTCEECCHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEECCHHHHHHHH
T ss_conf 55541456556777787501335657543577868999999999985498489996787577788886031789999999
Q ss_pred HHHHCCCCCCCCEEECCCCCCCCCCCCCCCCHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHH-HCCC
Q ss_conf 99984960246606678877425620798996564976625998999999999999999999875-1279
Q gi|254780826|r 441 KAIFDNSIKSVPYRVDENFGFSVPLEVKGVDRKLLNPRDSWNDVEAYDQKMRELLLMFENNAEKK-QIKI 509 (509)
Q Consensus 441 ~ai~~g~l~~~~~~~~~~f~l~iP~~~~gv~~~~l~P~~~w~d~~~Y~~~a~~L~~~F~~Nf~~~-~~~v 509 (509)
+||++|+|++++|+.+|+|||+||++|||||.++|||+++|+|+++|++++++|+++|++||+|| ++++
T Consensus 155 ~aI~~G~l~~~~~~~~~~fg~~iP~~vpGvp~~iLdP~~~w~d~~~y~~~~~~La~~F~~nF~k~~~~~~ 224 (241)
T 1ii2_A 155 DAIHDGTLDRTEYEEYPGWGLHIPKYVAKVPEHLLNPRKAWKDVRQFNETSKELVAMFQESFSARFAAKA 224 (241)
T ss_dssp HHHHSSSGGGSCEEEETTTTEEEESCCTTSCHHHHSHHHHCSCHHHHHHHHHHHHHHHHHHHHHHTGGGC
T ss_pred HHHHHCCCCCCCEEECCCCCEECCCCCCCCCHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9997097657752776877711557689998477697552588899999999999999999999764059
No 7
>>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A (A:14-201,A:277-337)
Probab=100.00 E-value=0 Score=620.90 Aligned_cols=238 Identities=33% Similarity=0.493 Sum_probs=231.5
Q ss_pred CCCCEEECCCHHHHHHHHHHHC-----CCEECCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCC----CC-CCCCCHH
Q ss_conf 8220462798899999999728-----838826854898568765687132236168865443457----67-8758889
Q gi|254780826|r 8 GSSRVYRNLSTSRLYEESIRRE-----KTILTCDGALRALTGQHTGRSAFDKFIVRDSHTENDVFW----EN-NKYISPA 77 (509)
Q Consensus 8 ~~~~v~~Nls~~eL~e~ai~~~-----eG~lt~~GAL~v~TG~~TGRSPkDKfIV~d~~t~d~I~W----g~-N~~i~~e 77 (509)
+.++|||||++++|||+|++++ ||+++++|||+|.||++|||||||||||+|+.|+++||| |+ ||||+++
T Consensus 1 G~~~i~~Nls~~~L~E~Al~~~~~~~~EG~it~~GAl~v~TG~~TGRSPkDKfIV~d~~t~~~iWW~~~wG~vN~pis~e 80 (249)
T 1ytm_A 1 GATNIVHNPSHEELFAAETQASLEGFEKGTVTEMGAVNVMTGVYTGRSPKDKFIVKNEASKEIWWTSDEFKNDNKPVTEE 80 (249)
T ss_dssp CCSEEEESCCHHHHHHHHTCTTCCGGGCEEECTTSSEEECCTTCCSBCGGGEEEECSGGGTTSCCCCSSSCCSCEEECHH
T ss_pred CCCEEEECCCHHHHHHHHHHCCCCCCCCEEECCCCCEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 98748869898999999986265666634886899879856996688977643637997110036786556567638999
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEEEECCHHHCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 99999999999862794699742551783236402872287107789997512542111344456612764588763742
Q gi|254780826|r 78 DFDTLKADMLDYIKDKDLFLQDLVACPHTKNAISVCVVTQYAWHSLFIRNLLKHKEDLGAVPNMMSLQVVVLPDFSADPN 157 (509)
Q Consensus 78 ~F~~L~~~v~~yl~~k~lyv~D~~~Gad~~~rl~vRvite~AwhaLF~~nmFirp~~~e~~~~~pd~tI~~aP~~~~~p~ 157 (509)
+|+.|+++|++||++|++||+|+||||||+||++||||||+||||||++||||||+.+++..|.|||+|+|+|.|++++.
T Consensus 81 ~F~~l~~~~~~yL~~kdlyV~D~~aGaDp~~rl~VRvIte~AwhaLF~~nMfiRPt~eel~~f~pdfvI~n~~~f~a~~~ 160 (249)
T 1ytm_A 81 AWAQLKALAGKELSNKPLYVVDLFCGANENTRLKIRFVMEVAWQAHFVTNMFIRPTEEELKGFEPDFVVLNASKAKVENF 160 (249)
T ss_dssp HHHHHHHHHHHHHSSSEEEEEEEEESSCTTTCEEEEEEESCHHHHHHHHHHSBCCCHHHHTTCCCSEEEEEETTCCCTTT
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEEEEEEHHHHHHHHHHHCCCCCHHHHHCCCCCEEEEECCCCCCCCC
T ss_conf 99999999999853798799864771784533337998601038899987356873455402356258983575567983
Q ss_pred C-CCCCCCCEEEEEHHCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 2-456666169977221935664136788877899999986241078799312453477787027998335431112224
Q gi|254780826|r 158 R-HGCCSETIIAVDLTAGLILIGGTSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 158 ~-~g~~Se~~i~in~~~k~~lI~GT~YaGEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
. .|++|+++|++||++++++|+||+||
T Consensus 161 ~~iG~tS~t~V~in~~~~~~vIlGT~Ya---------------------------------------------------- 188 (249)
T 1ytm_A 161 KELGLNSETAVVFNLAEKMQIILNTWYG---------------------------------------------------- 188 (249)
T ss_dssp TTTTCSSSCEEEEETTTTEEEEESCCCT----------------------------------------------------
T ss_pred CCCCCCCCCEEEECHHHCCEEECCCHHH----------------------------------------------------
T ss_conf 3466676636897244275254186889----------------------------------------------------
Q ss_pred CCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCEECCCCCEECCCCCCCCCEEEEEEC
Q ss_conf 78861330311021567412345553211013583335135887530110312400578981111478867670589860
Q gi|254780826|r 237 SVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGIPNFKDSSVTENTRAAYPL 316 (509)
Q Consensus 237 d~~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailENV~~d~~~~~df~d~s~TeNtR~~yp~ 316 (509)
||||||||+||++.||+||+| ++||||||||++|++++|||+|.|+|+||||+|||
T Consensus 189 -----------------------ggcy~k~~~l~~~~ep~i~~a-~~~~avlenv~~d~~~~vd~~d~~~t~ntr~~yp~ 244 (249)
T 1ytm_A 189 -----------------------GGCYAKVINLSKENEPDIWGA-IKRNALLENVTVDANGKVDFADKSVTENTRVSYPI 244 (249)
T ss_dssp -----------------------SEEEEECTTCCTTTCHHHHHH-CSTTCEEESCEECTTCCEETTCCSSCSCCEEEEEG
T ss_pred -----------------------CCEEEEEECCCCCCCHHHHHH-HHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEE
T ss_conf -----------------------856666513785567558999-87285436337857888667787566664320131
Q ss_pred CCCCC
Q ss_conf 00431
Q gi|254780826|r 317 NFIHN 321 (509)
Q Consensus 317 ~~i~n 321 (509)
++|||
T Consensus 245 ~~i~n 249 (249)
T 1ytm_A 245 FHIKN 249 (249)
T ss_dssp GGSSS
T ss_pred CCCCC
T ss_conf 01356
No 8
>>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus HB8} (A:217-252,A:339-360,A:418-483)
Probab=100.00 E-value=0 Score=338.84 Aligned_cols=124 Identities=54% Similarity=0.821 Sum_probs=117.3
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHH
Q ss_conf 24534777870279983354311122247886133031102156741234555321101358333513588753011031
Q gi|254780826|r 209 CSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVL 288 (509)
Q Consensus 209 csan~~~~~~d~alfFGLSGTGKTTLS~d~~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ail 288 (509)
||||+|+++ |+|||||||||||||||+||+|.||||-
T Consensus 1 csanvg~~g-d~alFFGLSGTGKTTLSaDp~R~LIGD~------------------------------------------ 37 (124)
T 1j3b_A 1 ASANVGKEG-DVAVFFGLSGTGKTTLSTDPERPLIGDP------------------------------------------ 37 (124)
T ss_dssp CEEEECTTC-CEEEEEECTTSCHHHHTCBTTBCEEESE------------------------------------------
T ss_pred EEEEECCCC-CEEEEEECCCCCCCEECCCCCCCCCCCC------------------------------------------
T ss_conf 553226889-7479972278876152337999735787------------------------------------------
Q ss_pred CCCEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCC
Q ss_conf 24005789811114788676705898600043100025678872699960267788760444185889999974232456
Q gi|254780826|r 289 ENVVVDECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYYFLSGYTAKV 368 (509)
Q Consensus 289 ENV~~d~~~~~df~d~s~TeNtR~~yp~~~i~n~~~~~~~~~p~~iifl~~d~~gvlPpvsklt~~qa~~~F~sGyT~k~ 368 (509)
|+
T Consensus 38 ----------------------~~-------------------------------------------------------- 39 (124)
T 1j3b_A 38 ----------------------RA-------------------------------------------------------- 39 (124)
T ss_dssp ----------------------EE--------------------------------------------------------
T ss_pred ----------------------CE--------------------------------------------------------
T ss_conf ----------------------41--------------------------------------------------------
Q ss_pred CCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 66200012565312100105001568315389999999881980999816746887688732078899999999984960
Q gi|254780826|r 369 AGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSI 448 (509)
Q Consensus 369 agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l 448 (509)
+|+||.+||++|++||++++++||||||||+||+||+|+||+|++||+||+||++|+|
T Consensus 40 ----------------------~p~~p~~ya~lL~~~~~~~~~~vwLVNTGW~GG~YGvG~Ri~l~~TRaiI~Ail~G~L 97 (124)
T 1j3b_A 40 ----------------------IFFLSADAYGVLPPIARLSAPRVYLVNTGWTGGPYGVGYRFPLPVTRALLKAALSGAL 97 (124)
T ss_dssp ----------------------EEEEECCTTSCSCSEEEECCCEEEEEECSEESSSTTTSEECCHHHHHHHHHHHHHTGG
T ss_pred ----------------------EEEEECCCCCCCCCHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf ----------------------7999646667767222089987899835776788888874578899999999961975
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCHHHC
Q ss_conf 246606678877425620798996564
Q gi|254780826|r 449 KSVPYRVDENFGFSVPLEVKGVDRKLL 475 (509)
Q Consensus 449 ~~~~~~~~~~f~l~iP~~~~gv~~~~l 475 (509)
++++|+.||+|||+||++|||||+++|
T Consensus 98 ~~~~~~~dpiFgl~VP~~~pGVp~~iL 124 (124)
T 1j3b_A 98 ENVPYRRDPVFGFEVPLEAPGVPQELL 124 (124)
T ss_dssp GGSCEEECTTTCCEEESCBTTBCGGGG
T ss_pred CCCCEEECCCCCEECCCCCCCCCHHHC
T ss_conf 577706768778536764899884667
No 9
>>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus HB8} (A:210-216,A:361-417,A:484-529)
Probab=100.00 E-value=2.8e-37 Score=266.48 Aligned_cols=93 Identities=56% Similarity=1.006 Sum_probs=89.2
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCC
Q ss_conf 18588999997423245666200012565312100105001568315389999999881980999816746887688732
Q gi|254780826|r 351 LNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYR 430 (509)
Q Consensus 351 lt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~R 430 (509)
+.++|||||||||||+|+||||+||+||++|||+|||+|||||||++||+||.+||++|
T Consensus 6 ~~~~qa~y~FlsGyTakvagtE~Gv~ep~~tFS~Cfg~pFl~l~p~~Ya~~L~~k~~~h--------------------- 64 (110)
T 1j3b_A 6 MHPEEAMYYFLSGYTARVAGTERGVTEPRATFSACFGAPFLPMHPGVYARMLGEKIRKH--------------------- 64 (110)
T ss_dssp EEHHHHHHHHHHCEEEEC---------CEEEECGGGCGGGCSSCHHHHHHHHHHHHHHH---------------------
T ss_pred EEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHC---------------------
T ss_conf 77999999997303330356556777888766414677656777789999999999866---------------------
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 0788999999999849602466066788774256207989965649766259989999999999999999998751279
Q gi|254780826|r 431 MPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPLEVKGVDRKLLNPRDSWNDVEAYDQKMRELLLMFENNAEKKQIKI 509 (509)
Q Consensus 431 i~l~~Tr~ii~ai~~g~l~~~~~~~~~~f~l~iP~~~~gv~~~~l~P~~~w~d~~~Y~~~a~~L~~~F~~Nf~~~~~~v 509 (509)
|||+||.|+++||++|++||.||++||+||+++|
T Consensus 65 ---------------------------------------------NPrnTW~Dk~aYd~~A~kLA~mF~eNFkKfe~~v 98 (110)
T 1j3b_A 65 ---------------------------------------------NPRETWADKEAYDQQARKLARLFQENFQKYASGV 98 (110)
T ss_dssp ---------------------------------------------CGGGGSSCHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ---------------------------------------------CHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf ---------------------------------------------9856058989999999999999999998635258
No 10
>>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* (A:1-177)
Probab=98.41 E-value=7e-08 Score=71.78 Aligned_cols=118 Identities=18% Similarity=0.073 Sum_probs=74.5
Q ss_pred HHHHHHHHCC-CCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCC---CCCEEEECCCEEECCCCCCCCCCCCCCCC
Q ss_conf 9999986241-0787993124534777870279983354311122247---88613303110215674123455532110
Q gi|254780826|r 191 VFTYLNHIFP-ERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSAS---VDRFLIGDDEHGWSKEGVFNFEGGCYAKS 266 (509)
Q Consensus 191 iFtvmny~lp-~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d---~~r~LigDDehgW~d~gvfn~EgGcYaK~ 266 (509)
+..+++|++. .++.+.+|||+-.- + +...+|.|-||+||||++.. ..-.+|.||...+...+-..+.++|+...
T Consensus 8 ~~~~~~~l~~~~~~~~~lHas~v~~-~-g~~vl~~G~sG~GKST~a~~l~~~g~~~i~DD~~~i~~~~~~~~~~~~p~~~ 85 (177)
T 2qmh_A 8 HHHGSMYLDSQLAERRSMHGVLVDI-Y-GLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPIL 85 (177)
T ss_dssp -------------CCCCEESEEEEE-T-TEEEEEECCCTTTTHHHHHHHHTTTCEEEESSEEEEEECSTTCEEEECCSSS
T ss_pred CCHHHHHHHHHHCCCEEEEEEEEEE-C-CEEEEEECCCCCCHHHHHHHHHHCCCEEECCEEEEEEEHHCCCCEEECCCCC
T ss_conf 1047778878739833688889999-9-9899998389986788999998189799988479987211255313225224
Q ss_pred CCCCCCCCHH-HHH-------HHHHCCHHHCCCE-ECC-CCCEECCCCCCCCCEE
Q ss_conf 1358333513-588-------7530110312400-578-9811114788676705
Q gi|254780826|r 267 INLSKETEPE-IFS-------ASCRFGTVLENVV-VDE-CGIPNFKDSSVTENTR 311 (509)
Q Consensus 267 i~Ls~~~EP~-I~~-------aa~~~~ailENV~-~d~-~~~~df~d~s~TeNtR 311 (509)
-+..+ ..|. |.+ .+.+..+.++.|+ +.+ +..+.+.....+.+++
T Consensus 86 ~~~~e-~~~~g~i~~~~~~~~~~~~~~~~i~~i~~L~~~~~~~~~~~~~~~~~~~ 139 (177)
T 2qmh_A 86 SHLLE-IRGLGIIDVMNLFGAGAVREDTTISLIVHLENWTPDKTFDRLGSGEQTQ 139 (177)
T ss_dssp TTEEE-ETTTEEEEHHHHHCTTSBCSCCBCCEEEEEC-------------CEEEE
T ss_pred CCHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHCCHHHHHH
T ss_conf 52176-5400232365505759999887503766401102001100079024435
No 11
>>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} (A:130-287)
Probab=96.74 E-value=0.001 Score=44.24 Aligned_cols=48 Identities=21% Similarity=0.156 Sum_probs=37.7
Q ss_pred CEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCC---CCCEEEECCCEEECC
Q ss_conf 87993124534777870279983354311122247---886133031102156
Q gi|254780826|r 203 GIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSAS---VDRFLIGDDEHGWSK 252 (509)
Q Consensus 203 g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d---~~r~LigDDehgW~d 252 (509)
+.+.+|||+=.- ++ ...+|-|-||+|||||+.. ..-.|+.||-.....
T Consensus 2 ~~~~lHa~~v~~-~g-~~vl~~G~sG~GKSTla~~l~~~g~~li~DD~~~i~~ 52 (158)
T 1ko7_A 2 RTTSLHGVLVDV-YG-VGVLITGDSGIGKSETALELIKRGHRLVADDNVEIRE 52 (158)
T ss_dssp EEEEEESEEEEE-TT-EEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEE
T ss_pred CCEEEEEEEEEE-CC-EEEEEECCCCCCHHHHHHHHHHHCCCEEECCEEEEEE
T ss_conf 616887699998-68-7999984899987999999998099197158389999
No 12
>>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} (A:134-291)
Probab=96.23 E-value=0.0021 Score=42.17 Aligned_cols=44 Identities=23% Similarity=0.299 Sum_probs=33.5
Q ss_pred EEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCC---CCCEEEECCCEE
Q ss_conf 7993124534777870279983354311122247---886133031102
Q gi|254780826|r 204 IMPMHCSINMDKEKEDVALFFGLSGTGKTTLSAS---VDRFLIGDDEHG 249 (509)
Q Consensus 204 ~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d---~~r~LigDDehg 249 (509)
.+++|||+-.- +| ...+|.|-||+|||||... .++.++.||-..
T Consensus 2 ~l~lH~s~v~~-~g-~~v~l~G~sgaGKSTL~~~L~~~~~~ivsdd~~~ 48 (158)
T 1knx_A 2 VAQIHGVLLEV-FG-VGVLLTGRSGIGKSECALDLINKNHLFVGDDAIE 48 (158)
T ss_dssp CEEEEEEEEEE-TT-EEEEEEESSSSSHHHHHHHHHTTTCEEEEEEEEE
T ss_pred CEEEEEEEEEE-CC-EEEEEECCCCCCHHHHHHHHHHHCCCEECCCCEE
T ss_conf 05772079998-58-6999982899987899999998199586268289
No 13
>>3dtb_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP]; gluconeogenesis, lyase, cytoplasm, decarboxylase, GTP-binding, nucleotide-binding; HET: GDP 1PE EPE; 1.30A {Rattus norvegicus} PDB: 2qey_A* 2qf1_A* 2qew_A* 2rk7_A 2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A* 3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* 1nhx_A* 2gmv_A* (A:1-242,A:331-421)
Probab=96.00 E-value=0.13 Score=30.34 Aligned_cols=260 Identities=17% Similarity=0.186 Sum_probs=151.1
Q ss_pred CCCCCCEEECCCHH----HHHHHHHHHCCCE-ECC-CCCEEEECC-CCCCCCCCCCEEECCCCCCCCCC-----CCC-CC
Q ss_conf 86822046279889----9999999728838-826-854898568-76568713223616886544345-----767-87
Q gi|254780826|r 6 LEGSSRVYRNLSTS----RLYEESIRREKTI-LTC-DGALRALTG-QHTGRSAFDKFIVRDSHTENDVF-----WEN-NK 72 (509)
Q Consensus 6 i~~~~~v~~Nls~~----eL~e~ai~~~eG~-lt~-~GAL~v~TG-~~TGRSPkDKfIV~d~~t~d~I~-----Wg~-N~ 72 (509)
|....+|||.-..+ .|.+++++.|+-+ |.. -+.....|. .=..|.-...||+-++.. |.+= -+. |+
T Consensus 39 lc~Pd~V~icdGS~eE~~~l~~~~~~~G~~~~L~k~~n~~l~rsdp~DvARvE~rTfI~t~~~~-dagPt~~~g~g~lnn 117 (333)
T 3dtb_A 39 LCQPEYIHICDGSEEEYGRLLAHMQEEGVIRKLKKYDNCWLALTDPRDVARIESKTVIITQEQR-DTVPIPKSGQSQLGR 117 (333)
T ss_dssp HHCCSEEEECCCCHHHHHHHHHHHHHTTSCEECTTSBSCEEECCCTTSSSCCGGGEEEECSSHH-HHSCCCTTSCCSSCC
T ss_pred HCCCCEEEECCCCHHHHHHHHHHHHHCCCCEECCCCCCCEEECCCCCCCCCCCCCEEEECCCHH-HCCCCCCCCCCCCCC
T ss_conf 7199879992899999999999998647713267899857621783312511566299678556-448866677665457
Q ss_pred CCCHHHHHHHHHH-HHHHHCCCCEEEEEEEEECCHHHCCEEE-EECCCCHHHHHHHHHCCCCCCC----CCCCCCCCCEE
Q ss_conf 5888999999999-9998627946997425517832364028-7228710778999751254211----13444566127
Q gi|254780826|r 73 YISPADFDTLKAD-MLDYIKDKDLFLQDLVACPHTKNAISVC-VVTQYAWHSLFIRNLLKHKEDL----GAVPNMMSLQV 146 (509)
Q Consensus 73 ~i~~e~F~~L~~~-v~~yl~~k~lyv~D~~~Gad~~~rl~vR-vite~AwhaLF~~nmFirp~~~----e~~~~~pd~tI 146 (509)
-++++...+-... +..-+++|.+||.=-.+|---.---++- =||..+|-.+-++-|..--... ....|.+-..-
T Consensus 118 w~~p~e~~~~l~~lf~G~M~GRTMYVipfsMGP~gSp~sk~GVqiTDS~YVv~sm~iMtR~G~~vl~~lg~~~Fv~~vHS 197 (333)
T 3dtb_A 118 WMSEEDFEKAFNARFPGCMKGRTMYVIPFSMGPLGSPLAKIGIELTDSPYVVASMRIMTRMGTSVLEALGDGEFIKCLHS 197 (333)
T ss_dssp EECHHHHHHHHHTTSTTTTTTSEEEEEEEEESSTTCTTCEEEEEEESCHHHHHHHHHHSEESHHHHHHHTTSCCEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCHHHHHHCCCCCCEEEEEE
T ss_conf 66989999999997355406987999730127799965444288017788877099987546999985378885677710
Q ss_pred EECCCCC--CCCCCCCCCC-CCEEEEEHHCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEE
Q ss_conf 6458876--3742245666-616997722193566413678887789999998624107879931245347778702799
Q gi|254780826|r 147 VVLPDFS--ADPNRHGCCS-ETIIAVDLTAGLILIGGTSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALF 223 (509)
Q Consensus 147 ~~aP~~~--~~p~~~g~~S-e~~i~in~~~k~~lI~GT~YaGEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alf 223 (509)
.-.|.-. .+...-.++. ...|....+++.++=.|+.|+|-- + + +-|
T Consensus 198 vG~pl~~~~~dv~~wpcnpdk~~I~h~pe~~~I~S~gSgYGGNa-------------------L----------E--~Gf 246 (333)
T 3dtb_A 198 VGCPLPLKKPLVNNWACNPELTLIAHLPDRREIISFGSGYGGNS-------------------L----------E--NGF 246 (333)
T ss_dssp CSCCSSCSSCCSTTCCCCGGGCEEEEETTTTEEEEESCCSHHHH-------------------C----------C--SEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCC-------------------C----------C--CCE
T ss_conf 58888777666677888888549998257436999547667641-------------------0----------6--761
Q ss_pred EECCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCEECCCCCEECCC
Q ss_conf 83354311122247886133031102156741234555321101358333513588753011031240057898111147
Q gi|254780826|r 224 FGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGIPNFKD 303 (509)
Q Consensus 224 FGLSGTGKTTLS~d~~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailENV~~d~~~~~df~d 303 (509)
||.. -+-+.+.-|.++.+ ++.++|.-||.+.++|.|-..-
T Consensus 247 FGVa---------------------------------------pGTn~~tNP~am~t-l~~ntIFTNValt~DG~vwWEG 286 (333)
T 3dtb_A 247 FGVA---------------------------------------PGTSVKTNPNAIKT-IQKNTIFTNVAETSDGGVYWEG 286 (333)
T ss_dssp EEEC---------------------------------------TTCCTTTCHHHHHH-TTBSCEEESCEEETTSCEECTT
T ss_pred EEEC---------------------------------------CCCCCCCCHHHHHH-HHHCCEEEEEEECCCCCCCCCC
T ss_conf 2335---------------------------------------89996648899998-7527545555576788656577
Q ss_pred CCC--CCCEEEEEECCCCCCCCCC---CCCCCCCEEEEEECC
Q ss_conf 886--7670589860004310002---567887269996026
Q gi|254780826|r 304 SSV--TENTRAAYPLNFIHNHAPQ---SIGKHPKHVIMLAAD 340 (509)
Q Consensus 304 ~s~--TeNtR~~yp~~~i~n~~~~---~~~~~p~~iifl~~d 340 (509)
..- -+|... +++.-+...+ ..+.||.+=|-.-..
T Consensus 287 ~~~e~p~~~~~---~dW~G~~w~~~~~~paAHPNSRFt~pa~ 325 (333)
T 3dtb_A 287 IDEPLAPGVTI---TSWKNKEWRPQDEEPCAHPNSRFCTPAS 325 (333)
T ss_dssp CCCCCCTTCCE---ECTTSSEECTTSSSCSSCTTCEEEEEGG
T ss_pred CCCCCCCCCEE---CCCCCCCCCCCCCCCCCCCCCCEEEEHH
T ss_conf 98656777311---1378987899889867798436551177
No 14
>>2zci_A Phosphoenolpyruvate carboxykinase [GTP], phosphoenolpyruvate; GTP-dependent, signaling protein, lyase; 2.30A {Corynebacterium glutamicum} (A:1-226,A:314-403)
Probab=95.98 E-value=0.13 Score=30.28 Aligned_cols=226 Identities=15% Similarity=0.143 Sum_probs=145.5
Q ss_pred CCCCCCEEECCCH-H---HHHHHHHHHCCCE-ECC---CCCEEEECCC-CCCCCCCCCEEECCCCCCCCCCCCC-CCCCC
Q ss_conf 8682204627988-9---9999999728838-826---8548985687-6568713223616886544345767-87588
Q gi|254780826|r 6 LEGSSRVYRNLST-S---RLYEESIRREKTI-LTC---DGALRALTGQ-HTGRSAFDKFIVRDSHTENDVFWEN-NKYIS 75 (509)
Q Consensus 6 i~~~~~v~~Nls~-~---eL~e~ai~~~eG~-lt~---~GAL~v~TG~-~TGRSPkDKfIV~d~~t~d~I~Wg~-N~~i~ 75 (509)
|....+|||.-.. + .|.+++++.|+-+ |.. .+...+.|.. =..|.-++.||.-+... +=+. |+-++
T Consensus 30 L~~Pd~V~icdGS~eE~~~l~~~~v~~G~~~~L~~~k~pn~~l~rs~p~DVARve~rTfI~s~~~~----dagp~nnwm~ 105 (316)
T 2zci_A 30 LFQPEAVVFVDGSQAEWDRMAEDLVEAGTLIKLNEEKRPNSYLARSNPSDVARVESRTFICSEKEE----DAGPTNNWAP 105 (316)
T ss_dssp HHCCSEEEECCCCHHHHHHHHHHHHHTTSEEECCTTTSTTCEEECCCGGGSSCCGGGEEECCSSTT----TTCTTSCCCC
T ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHCCCEEECCCCCCCCCEEECCCCCCCEEECCCEEEECCCHH----HCCCCCCCCC
T ss_conf 609987999089999999999999866774556766688862203881322075147799678755----4277567789
Q ss_pred HHHHHHHHHHHHH-HHCCCCEEEEEEEEECC-HHHCCEEEEECCCCHHHHHHHHHCCCCCC--CCCCCCCCCCE-EEECC
Q ss_conf 8999999999999-86279469974255178-32364028722871077899975125421--11344456612-76458
Q gi|254780826|r 76 PADFDTLKADMLD-YIKDKDLFLQDLVACPH-TKNAISVCVVTQYAWHSLFIRNLLKHKED--LGAVPNMMSLQ-VVVLP 150 (509)
Q Consensus 76 ~e~F~~L~~~v~~-yl~~k~lyv~D~~~Gad-~~~rl~vRvite~AwhaLF~~nmFirp~~--~e~~~~~pd~t-I~~aP 150 (509)
++.+..-...... -+++|.+||.=-.+|-- ..+...--=||..||-.+-++-|..--.. +.+.. ..+|. -+|.-
T Consensus 106 p~e~~~~l~~lf~G~M~GRTMYViPfsMGP~gSp~s~~gVeiTDS~YVv~sm~imtR~g~~vl~~l~~-~~~Fv~~lHSv 184 (316)
T 2zci_A 106 PQAMKDEMSKHYAGSMKGRTMYVVPFCMGPISDPDPKLGVQLTDSEYVVMSMRIMTRMGIEALDKIGA-NGSFVRCLHSV 184 (316)
T ss_dssp HHHHHHHHHHHHTTTTTTSEEEEEEEEESCTTCSSCEEEEEEESCHHHHHHHHHHSEESHHHHHHHTT-TCCCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHCCHHHHHHHCC-CCCEEEEEECC
T ss_conf 89999999998666535985999856536899875563489715589998689987088999997378-88768766126
Q ss_pred CCCCCCC----CCCCCCCCEEEEEHHCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEEC
Q ss_conf 8763742----245666616997722193566413678887789999998624107879931245347778702799833
Q gi|254780826|r 151 DFSADPN----RHGCCSETIIAVDLTAGLILIGGTSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGL 226 (509)
Q Consensus 151 ~~~~~p~----~~g~~Se~~i~in~~~k~~lI~GT~YaGEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGL 226 (509)
+....+. .-.++.+..|....+++.+.=.|+.|+|-- + + +-|||.
T Consensus 185 G~pl~~~~~~v~wpcn~~k~I~h~p~~~~I~S~gsgYGGNa-------------------L----------E--~GfFGV 233 (316)
T 2zci_A 185 GAPLEPGQEDVAWPCNDTKYITQFPETKEIWSYGSGYGGNA-------------------I----------E--NGFFGV 233 (316)
T ss_dssp SCCCCSSCCCCSSCCCSSCEEEEETTTTEEEEESCCSHHHH-------------------C----------C--SEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCC-------------------C----------C--CCEEEE
T ss_conf 77776555566678988738999456467999537666652-------------------1----------7--762555
Q ss_pred CCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCEECCCCCEECCCCCC
Q ss_conf 54311122247886133031102156741234555321101358333513588753011031240057898111147886
Q gi|254780826|r 227 SGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGIPNFKDSSV 306 (509)
Q Consensus 227 SGTGKTTLS~d~~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailENV~~d~~~~~df~d~s~ 306 (509)
. -+-+...-|.++.+..+.++|.-||.+.++|.|-..-...
T Consensus 234 a---------------------------------------pGtn~~tnP~am~tl~~~ntIFTNVa~t~DG~vwWeG~~~ 274 (316)
T 2zci_A 234 A---------------------------------------PGTNYASNPIAMKTMEPGNTLFTNVALTDDGDIWWEGMDG 274 (316)
T ss_dssp C---------------------------------------TTCCTTTCHHHHHHHTTCCCEEESCEEETTSCEECTTCSS
T ss_pred C---------------------------------------CCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEECCCCCC
T ss_conf 6---------------------------------------8898354999999731168179877787999650267998
No 15
>>3dtb_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP]; gluconeogenesis, lyase, cytoplasm, decarboxylase, GTP-binding, nucleotide-binding; HET: GDP 1PE EPE; 1.30A {Rattus norvegicus} PDB: 2qey_A* 2qf1_A* 2qew_A* 2rk7_A 2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A* 3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* 1nhx_A* 2gmv_A* (A:243-330,A:422-624)
Probab=95.80 E-value=0.15 Score=29.80 Aligned_cols=241 Identities=19% Similarity=0.168 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCC--CCCCCC--EEEEEEECCCCCCCCCCC-CCC-----CEEEECCCEEECCCCCCC
Q ss_conf 7899999986241078799312453--477787--027998335431112224-788-----613303110215674123
Q gi|254780826|r 188 KKSVFTYLNHIFPERGIMPMHCSIN--MDKEKE--DVALFFGLSGTGKTTLSA-SVD-----RFLIGDDEHGWSKEGVFN 257 (509)
Q Consensus 188 KKsiFtvmny~lp~~g~lpmHcsan--~~~~~~--d~alfFGLSGTGKTTLS~-d~~-----r~LigDDehgW~d~gvfn 257 (509)
|+=-+++..++..++|-|.=|-=.- .+.+|+ .++.- -.|+.|||+|+- .|. -..||||- .|-
T Consensus 4 Kc~ALRias~~ar~egwLAEHMlIlgv~~P~g~~~yi~aA-FPSaCGKTnlAMl~p~~~Gwkv~~vGDDI-Awm------ 75 (291)
T 3dtb_A 4 KCFALRIASRLAKEEGWLAEHMLILGITNPEGKKKYLAAA-FPSACGKTNLAMMNPTLPGWKVECVGDDI-AWM------ 75 (291)
T ss_dssp HHHHTHHHHHHHHHHTCEEESCEEEEEECTTSCEEEEEEE-CCTTSSHHHHHTCCCSSTTCEEEEEESSC-EEE------
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHEECCCCCCCEEEEEE-ECCCCCCCCEEEECCCCCCCCEEEECCCH-HHE------
T ss_conf 1244567766341367187643443013789870579998-43656765212205898997117830676-773------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCC-CEEEE
Q ss_conf 45553211013583335135887530110312400578981111478867670589860004310002567887-26999
Q gi|254780826|r 258 FEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHP-KHVIM 336 (509)
Q Consensus 258 ~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailENV~~d~~~~~df~d~s~TeNtR~~yp~~~i~n~~~~~~~~~p-~~iif 336 (509)
++ +++|+. |++ |--+ +-.+-| +.|||
T Consensus 76 -------------------------~~---------~~dG~l-----------~Ai-------NPwe-dP~GVpi~aiiF 102 (291)
T 3dtb_A 76 -------------------------KF---------DAQGNL-----------RAI-------NPWE-SPEGVPIEGIIF 102 (291)
T ss_dssp -------------------------EE---------CTTSCE-----------EEE-------CCTT-CTTCEEEEEEEE
T ss_pred -------------------------EE---------CCCCCE-----------EEE-------CCCC-CCCCCCEEEEEE
T ss_conf -------------------------78---------899977-----------864-------3633-778876148998
Q ss_pred EECCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHC-CCCCCCCHHHHHHHHHHHHH---HHCCE
Q ss_conf 602677887604441858899999742324566620001256531210010-50015683153899999998---81980
Q gi|254780826|r 337 LAADAFGVLPPVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFG-APFMPRDPVQYGNILKDYIV---KYCVD 412 (509)
Q Consensus 337 l~~d~~gvlPpvsklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg-~PF~~~~p~~ya~ll~~~i~---~~~~~ 412 (509)
=-+|+. .+|+|..-..=+-..+..+.-.|+.+.+..|..- .+..-+|+ -||+.+|...|-+--.+--+ ..-.+
T Consensus 103 GGRr~~-t~PlV~ea~~W~hGV~~gatm~SE~TAAa~g~~g--~~r~dP~AmlPF~gY~~gdY~~HWL~~g~~~~~~~Pk 179 (291)
T 3dtb_A 103 GGRRPA-GVPLVYEALSWQHGVFVGAAMRSEATAAAEHKGK--VIMHDPFAMRPFFGYNFGKYLAHWLSMAHRPAAKLPK 179 (291)
T ss_dssp ECCCSS-SCCSEEECSSHHHHHHHHHTCEEECCTTSSCCTT--CEEECGGGCTTTCSSCHHHHHHHHHHGGGSTTCCCCE
T ss_pred ECCCCC-CCCCHHHHCCCCCEEEEEEEEECCCCCCCCCCCC--CEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCE
T ss_conf 157766-7888778435254079877531022101335778--4786733468545789899999999997534456972
Q ss_pred EEEEE---CCCCCCCC--CCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCC----CCCCCCHHHCCHHHHCCC
Q ss_conf 99981---67468876--8873207889999999998496024660667887742562----079899656497662599
Q gi|254780826|r 413 CWLVN---TGWTAGSY--GEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPL----EVKGVDRKLLNPRDSWND 483 (509)
Q Consensus 413 vyLvN---TGw~Gg~~--g~G~Ri~l~~Tr~ii~ai~~g~l~~~~~~~~~~f~l~iP~----~~~gv~~~~l~P~~~w~d 483 (509)
+|.|| .+=.|.-- |-|. ....-.=|++- .+|+. +...-|+ |+ ||+ ...|.+.+-+...-+ -|
T Consensus 180 IF~VNwFrkd~~G~FlWPGfge--N~RvL~Wi~~R-~~G~~---~a~eTpi-G~-iP~~edL~l~Gl~~~~~~~l~~-vd 250 (291)
T 3dtb_A 180 IFHVNWFRKDKNGKFLWPGFGE--NSRVLEWMFGR-IEGED---SAKLTPI-GY-VPKEDALNLKGLGDVNVEELFG-IS 250 (291)
T ss_dssp EEEECSCCBCTTSCBSSCCGGG--GHHHHHHHHHH-HHTCC---CEEEETT-EE-EECTTTSCCTTCTTCCHHHHHC-CC
T ss_pred EEEEEECCCCCCCCCCCCCCCC--HHHHHHHHHHH-HCCCC---CCCCCCC-CC-CCCCCCCCCCCCCCCCHHHHHC-CC
T ss_conf 8998102317988765788650--24999999999-64976---6201674-24-5772436766788013798856-79
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 899999999999999999
Q gi|254780826|r 484 VEAYDQKMRELLLMFENN 501 (509)
Q Consensus 484 ~~~Y~~~a~~L~~~F~~N 501 (509)
+++|.+++....+-|.+-
T Consensus 251 ~~~W~~E~~~i~~~~~~~ 268 (291)
T 3dtb_A 251 KEFWEKEVEEIDKYLEDQ 268 (291)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999865
No 16
>>2faf_A Phosphoenolpyruvate carboxykinase; pepck, phosphoryl transfer, lyase; HET: 20S EPE 1PE; 1.70A {Gallus gallus} PDB: 2fah_A* 2qzy_A* (A:1-226,A:315-405)
Probab=94.40 E-value=0.39 Score=27.11 Aligned_cols=225 Identities=16% Similarity=0.141 Sum_probs=138.4
Q ss_pred CCCCCCEEECCC-H---HHHHHHHHHHCCCE-ECCC-CCEEEECC-CCCCCCCCCCEEECCCCCCCCCC-------CCC-
Q ss_conf 868220462798-8---99999999728838-8268-54898568-76568713223616886544345-------767-
Q gi|254780826|r 6 LEGSSRVYRNLS-T---SRLYEESIRREKTI-LTCD-GALRALTG-QHTGRSAFDKFIVRDSHTENDVF-------WEN- 70 (509)
Q Consensus 6 i~~~~~v~~Nls-~---~eL~e~ai~~~eG~-lt~~-GAL~v~TG-~~TGRSPkDKfIV~d~~t~d~I~-------Wg~- 70 (509)
|....+||+.-. . +.|.+.+++.++-+ |.+. |.....|. +=..|--.+.||+-++... .+= -+.
T Consensus 22 Lc~Pd~V~icdGS~eE~~~L~~~~~~~G~~~~L~k~~n~~l~rs~p~DvARve~~T~I~t~~~~d-a~pt~~~~g~kg~l 100 (317)
T 2faf_A 22 LCRPREVLLCDGSEEEGKELLRGLQDDGVLHPLPKYDNCWLARTDPRDVARVESKTVLVTPEQSD-AVPPPPPSGGPPQL 100 (317)
T ss_dssp HHCCSEEEECCCCHHHHHHHHHHHHHTTSEEECTTSBSCEEECCCTTCSSCCGGGEEEECSSGGG-TSCCCCTTCCCCCS
T ss_pred HCCCCEEEECCCCHHHHHHHHHHHHHCCCEEECCCCCCCEEECCCHHHCCEECCCEEEECCCCCC-CCHHCCCCCCCCCC
T ss_conf 62998799928999999999999997588355667999578407812301321553893586000-20000135677743
Q ss_pred CCCCCHHHHHH-HHHHHHHHHCCCCEEEEEEEEECCHH-HCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCEE-E
Q ss_conf 87588899999-99999998627946997425517832-364028722871077899975125421113444566127-6
Q gi|254780826|r 71 NKYISPADFDT-LKADMLDYIKDKDLFLQDLVACPHTK-NAISVCVVTQYAWHSLFIRNLLKHKEDLGAVPNMMSLQV-V 147 (509)
Q Consensus 71 N~~i~~e~F~~-L~~~v~~yl~~k~lyv~D~~~Gad~~-~rl~vRvite~AwhaLF~~nmFirp~~~e~~~~~pd~tI-~ 147 (509)
|+-++++.+.+ |.+.+..-+++|.+||.=-.+|---. +...--=||..+|-.+-++-|...- ...++.--.+|.- +
T Consensus 101 ~nw~~~~e~~~~l~~lf~G~M~GRTMYVipfsMGP~gSp~sk~GVqiTDS~YVv~sm~imtR~g-~~vl~~lg~~Fv~~v 179 (317)
T 2faf_A 101 GNWMSPNAFQAAVQERFPGCMAGRPLYVIPFSMGPPTSPLAKLGVQVTDSPYVVLSMRIMTRVG-PAVLQRLDDDFVRCL 179 (317)
T ss_dssp CCEECHHHHHHHHHHHSTTTTTTSEEEEEEEEESCTTCTTCEEEEEEESCHHHHHHHHHHSEES-HHHHTTCCSCCEEEE
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCEEEECCCHHHHHHHHHHHHCC-HHHHHHHHCCCEEEE
T ss_conf 4657989999999986034446966899743317899975553357206666544189987611-999986224622446
Q ss_pred ECCCCCCCCCC-----CCCCC-CCEEEEEHHCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEE
Q ss_conf 45887637422-----45666-6169977221935664136788877899999986241078799312453477787027
Q gi|254780826|r 148 VLPDFSADPNR-----HGCCS-ETIIAVDLTAGLILIGGTSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVA 221 (509)
Q Consensus 148 ~aP~~~~~p~~-----~g~~S-e~~i~in~~~k~~lI~GT~YaGEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~a 221 (509)
|.-+....+.. --++. .+.|....+++.++=.|+.|+|-- + + +
T Consensus 180 HSvG~p~~~~~~~~~~wpcnp~k~~I~h~p~~~~I~S~gSgYGGNa-------------------L--------E----~ 228 (317)
T 2faf_A 180 HSVGRPLPLTEPLVSSWPCDPSRVLVAHIPSERRIVSFGSGYGGNS-------------------L--------E----R 228 (317)
T ss_dssp EECSCCSSCSSCCSTTCCCCGGGCEEEEEGGGTEEEEESCCSHHHH-------------------C--------C----S
T ss_pred EECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCC-------------------H--------C----C
T ss_conf 5158866667666777888876489986277564999757868751-------------------1--------5----5
Q ss_pred EEEECCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCEECCCCCEEC
Q ss_conf 99833543111222478861330311021567412345553211013583335135887530110312400578981111
Q gi|254780826|r 222 LFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGIPNF 301 (509)
Q Consensus 222 lfFGLSGTGKTTLS~d~~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailENV~~d~~~~~df 301 (509)
-|||.. -+-+.+.-|.++++ ++.++|.-||.+.++|.|-.
T Consensus 229 GfFGVa---------------------------------------pGtn~~tNP~am~t-~~~~tIFTNVa~t~DG~vwW 268 (317)
T 2faf_A 229 GFFGVA---------------------------------------PGTSSRTNPNAMAT-IARNTIFTNVGLRSDGGVYW 268 (317)
T ss_dssp EEEEEC---------------------------------------TTCCTTTCHHHHHH-TSBSCEEESCEEETTSCEEC
T ss_pred CCEEEC---------------------------------------CCCCCCCCHHHHHH-HHCCCCEEEEEECCCCCEEE
T ss_conf 602325---------------------------------------89898779999998-61387336678868997411
Q ss_pred CC
Q ss_conf 47
Q gi|254780826|r 302 KD 303 (509)
Q Consensus 302 ~d 303 (509)
.-
T Consensus 269 EG 270 (317)
T 2faf_A 269 DG 270 (317)
T ss_dssp TT
T ss_pred CC
T ss_conf 67
No 17
>>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} (A:)
Probab=92.52 E-value=0.054 Score=32.75 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=21.5
Q ss_pred EEECCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 93124534777870279983354311122247
Q gi|254780826|r 206 PMHCSINMDKEKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 206 pmHcsan~~~~~~d~alfFGLSGTGKTTLS~d 237 (509)
||...+..-..+.-..++.|.+|+||||++..
T Consensus 3 ~~~~~~~~~~~k~~~I~i~G~~GsGKtTla~~ 34 (203)
T 1ukz_A 3 ATTSQPAFSPDQVSVIFVLGGPGAGKGTQCEK 34 (203)
T ss_dssp -----CCSCTTTCEEEEEECSTTSSHHHHHHH
T ss_pred CCCCCCCCCCCCCEEEEEECCCCCCHHHHHHH
T ss_conf 67799988999881899989999987999999
No 18
>>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* (A:)
Probab=91.85 E-value=0.057 Score=32.62 Aligned_cols=22 Identities=41% Similarity=0.533 Sum_probs=18.1
Q ss_pred CCCEEEEEEECCCCCCCCCCCC
Q ss_conf 7870279983354311122247
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d 237 (509)
.+.-..++.|++|+||||++.-
T Consensus 3 mk~~~I~i~G~~GsGKTTla~~ 24 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMA 24 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
T ss_conf 7887999899999999999999
No 19
>>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PSI-2, protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} (A:)
Probab=91.44 E-value=0.25 Score=28.38 Aligned_cols=17 Identities=35% Similarity=0.624 Sum_probs=14.5
Q ss_pred EEEEEEECCCCCCCCCC
Q ss_conf 02799833543111222
Q gi|254780826|r 219 DVALFFGLSGTGKTTLS 235 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS 235 (509)
-..||+|..|||||++.
T Consensus 6 ~~iLl~GPPGtGKT~~a 22 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKX 22 (199)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred EEEEEECCCCCHHHHHH
T ss_conf 28999999997399999
No 20
>>1rkb_A Protein AD-004, protein CGI-137; five-stranded parallel beta-sheet flanked by 7 alpha- helices, transferase; 2.00A {Homo sapiens} (A:)
Probab=91.40 E-value=0.054 Score=32.78 Aligned_cols=19 Identities=42% Similarity=0.552 Sum_probs=16.6
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-..++.|+||+|||||+.-
T Consensus 5 ~~I~i~G~~GsGKtTla~~ 23 (173)
T 1rkb_A 5 PNILLTGTPGVGKTTLGKE 23 (173)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 8598988999998999999
No 21
>>1yj5_A 5' polynucleotide kinase-3' phosphatase catalytic domain; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} (A:205-366)
Probab=91.37 E-value=0.091 Score=31.28 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=17.4
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
...+.++.|++|+||||++..
T Consensus 20 ~~~~I~l~G~pGsGKST~a~~ 40 (162)
T 1yj5_A 20 NPEVVVAVGFPGAGKSTFIQE 40 (162)
T ss_dssp SCCEEEEECCTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
T ss_conf 975999956899867799998
No 22
>>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} (A:)
Probab=91.24 E-value=0.063 Score=32.32 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=16.6
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
...||+|.+||||||+..-
T Consensus 44 ~~iLl~GPpGtGKTtla~a 62 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEG 62 (187)
T ss_dssp CEEEEESCGGGCHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHH
T ss_conf 7806864764014799999
No 23
>>3hws_A ATP-dependent CLP protease ATP-binding subunit CLPX; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli k-12} PDB: 3hte_A (A:1-255)
Probab=91.00 E-value=0.067 Score=32.17 Aligned_cols=48 Identities=21% Similarity=0.196 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 877899999986241078799312453477787027998335431112224
Q gi|254780826|r 186 EIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 186 EiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
+.|+.+-.+..+.+..+. +....+.+...-...||+|.+|||||+|.-
T Consensus 22 ~~k~~l~~~i~~~~~~~~---~~~~~~~~~~~~~~iLl~GPpGtGKT~la~ 69 (255)
T 3hws_A 22 QAKKVLAVAVYNHYKRLR---NGDTSNGVELGKSNILLIGPTGSGKTLLAE 69 (255)
T ss_dssp HHHHHHHHHHHHHHHHHH---TTSCSSSCCCCCCCEEEECCTTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---CCCCCCCCCCCCCCEEEECCCCCCHHHHHH
T ss_conf 999999999999998862---677788875676537998999888999999
No 24
>>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* (A:27-244)
Probab=90.89 E-value=0.064 Score=32.30 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=17.8
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
+.-+.++.||+|+||||++..
T Consensus 8 ~p~viil~GlpGsGKST~A~~ 28 (218)
T 2axn_A 8 SPTVIVMVGLPARGKTYISKK 28 (218)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
T ss_conf 994999989999988999999
No 25
>>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} (A:1-201)
Probab=90.67 E-value=0.075 Score=31.85 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=16.7
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
....||+|.+|||||+|...
T Consensus 50 ~~~iLl~GPpGtGKT~la~~ 69 (201)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARR 69 (201)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
T ss_conf 86699989999888999999
No 26
>>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein structure initiative; 3.20A {Agrobacterium tumefaciens str} (A:)
Probab=90.64 E-value=0.11 Score=30.82 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=17.1
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
...+.++-|++|+||||++..
T Consensus 8 ~~~~I~l~G~pGsGKTTla~~ 28 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEA 28 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
T ss_conf 985899989999888999999
No 27
>>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP; HET: ADP; 1.70A {Leishmania major strain friedlin} (A:)
Probab=90.55 E-value=0.1 Score=30.89 Aligned_cols=21 Identities=38% Similarity=0.469 Sum_probs=17.7
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
.+-..++.|++|+||||++..
T Consensus 9 ~~~~I~i~G~~GsGKSTla~~ 29 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEM 29 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
T ss_conf 998799982999998999999
No 28
>>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} (A:)
Probab=90.44 E-value=0.11 Score=30.83 Aligned_cols=20 Identities=25% Similarity=0.699 Sum_probs=17.0
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
.-+.++.|+||+||||++.-
T Consensus 8 ~~~I~l~G~~GsGKSTla~~ 27 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASE 27 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
T ss_conf 94899989999898999999
No 29
>>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus} (A:369-546)
Probab=90.27 E-value=0.1 Score=31.01 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=16.7
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+.+.++-|+||+||||++.-
T Consensus 4 g~~I~l~G~~GsGKSTia~~ 23 (178)
T 2gks_A 4 GFCVWLTGLPCAGKSTIAEI 23 (178)
T ss_dssp CEEEEEECSTTSSHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHH
T ss_conf 36999834558827599999
No 30
>>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A (A:1-182)
Probab=90.20 E-value=0.11 Score=30.75 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=16.6
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+.+.++.|+||.|||||.-
T Consensus 4 G~~i~liG~sGsGKSTl~r 22 (182)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSK 22 (182)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
T ss_conf 7799888999998999999
No 31
>>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Aeropyrum pernix K1} (A:)
Probab=90.06 E-value=0.13 Score=30.25 Aligned_cols=22 Identities=45% Similarity=0.652 Sum_probs=17.9
Q ss_pred CCCEEEEEEECCCCCCCCCCCC
Q ss_conf 7870279983354311122247
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d 237 (509)
.+.-+.++.|++|+||||++.-
T Consensus 11 ~~~~~I~i~G~~GsGKTT~a~~ 32 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATR 32 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
T ss_conf 8995999789999999999999
No 32
>>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} (A:1-192)
Probab=90.05 E-value=0.12 Score=30.47 Aligned_cols=20 Identities=35% Similarity=0.368 Sum_probs=16.7
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
..+.++.|.+||||||+...
T Consensus 44 ~~~ili~GppGtGKT~~a~~ 63 (192)
T 1fnn_A 44 YPRATLLGRPGTGKTVTLRK 63 (192)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHH
T ss_conf 98179985998819999999
No 33
>>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} (A:)
Probab=89.73 E-value=0.09 Score=31.32 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=16.1
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-+.++.|+||+||||++..
T Consensus 3 ~~I~i~G~~GsGKsT~a~~ 21 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRE 21 (173)
T ss_dssp CCEEEESCTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 8599989999988999999
No 34
>>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} (B:1-196)
Probab=89.63 E-value=0.12 Score=30.49 Aligned_cols=19 Identities=53% Similarity=0.705 Sum_probs=16.7
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
...|+.|.+|||||||..-
T Consensus 46 ~~ili~GppGtGKT~la~~ 64 (196)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKY 64 (196)
T ss_dssp CEEEEEECTTSSHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHH
T ss_conf 8658987998849999999
No 35
>>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} (A:)
Probab=89.58 E-value=0.1 Score=30.87 Aligned_cols=19 Identities=32% Similarity=0.639 Sum_probs=16.6
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-..++.|.+|+||||++..
T Consensus 5 ~~I~i~G~~GsGKtTla~~ 23 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 8899988999987999999
No 36
>>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} (A:)
Probab=89.46 E-value=0.1 Score=30.98 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=22.9
Q ss_pred EEEEEEECCCCCCCCCCCC----CCCEEEECCCEEEC
Q ss_conf 0279983354311122247----88613303110215
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS----VDRFLIGDDEHGWS 251 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d----~~r~LigDDehgW~ 251 (509)
-..++.|+||+|||||+.. -+..++.+|...+.
T Consensus 5 ~~I~i~G~~GsGKsTla~~La~~~~~~~~~~~~~~~~ 41 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEK 41 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECCCCHHHH
T ss_conf 8499989999988999999999959986816711688
No 37
>>3h0k_A UPF0200 protein SSO1041; adenylate, kinase, structural genomics, PSI-2, protein structure initiative; 3.25A {Sulfolobus solfataricus} (A:)
Probab=89.36 E-value=0.11 Score=30.69 Aligned_cols=18 Identities=33% Similarity=0.650 Sum_probs=15.6
Q ss_pred EEEEEECCCCCCCCCCCC
Q ss_conf 279983354311122247
Q gi|254780826|r 220 VALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d 237 (509)
+.++.|++|+||||++.-
T Consensus 2 iI~i~G~~GsGKsT~a~~ 19 (178)
T 3h0k_A 2 VILITGMPGSGKSEFAKL 19 (178)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
T ss_conf 899989999999999999
No 38
>>2rhm_A Putative kinase; ZP_00765535.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Chloroflexus aurantiacus j-10-fl} (A:)
Probab=89.31 E-value=0.17 Score=29.51 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=17.4
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
..-+.++-|+||+||||++..
T Consensus 4 ~~~~I~i~G~~GsGKsT~a~~ 24 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQA 24 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
T ss_conf 997999987899999999999
No 39
>>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} (A:)
Probab=89.30 E-value=0.12 Score=30.51 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=16.8
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
.-+.++.|++|+||||++..
T Consensus 5 ~~~I~i~G~~GsGKTTia~~ 24 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp CCEEEEECCC----CHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
T ss_conf 80799989999149999999
No 40
>>2qy9_A Cell division protein FTSY; SRP receptor, protein targeting, simibi class GTPase, cell cycle, GTP-binding, inner membrane, membrane; 1.90A {Escherichia coli} (A:93-290)
Probab=89.03 E-value=0.19 Score=29.15 Aligned_cols=33 Identities=30% Similarity=0.361 Sum_probs=22.4
Q ss_pred CCEEEEEEECCCCCCCCCCC--------CCCCE-EEECCCEE
Q ss_conf 87027998335431112224--------78861-33031102
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSA--------SVDRF-LIGDDEHG 249 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~--------d~~r~-LigDDehg 249 (509)
++.+..+.|+||.|||||.. +..+. +.|.|...
T Consensus 6 ~Gevi~lvG~nGsGKSTl~~~Lag~l~~~gg~v~~~g~d~~~ 47 (198)
T 2qy9_A 6 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR 47 (198)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTC
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 971799741333465404889999987446750699731213
No 41
>>2c95_A Adenylate kinase 1; AP4A, nucleotide kinase, transferase, ATP-binding; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A (A:)
Probab=89.02 E-value=0.13 Score=30.21 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=17.3
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
.-..++.|++|+||||++..
T Consensus 9 ~~~I~i~G~~GsGKsTla~~ 28 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEK 28 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
T ss_conf 85899989999987999999
No 42
>>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA- binding protein, DNA binding protein; HET: SAP; 2.50A {Deinococcus radiodurans} (A:71-285)
Probab=88.96 E-value=0.14 Score=30.06 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=17.6
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+.+.+++|.+|||||||...
T Consensus 4 G~itli~G~pGsGKT~l~lq 23 (215)
T 1xp8_A 4 GRITEIYGPESGGKTTLALA 23 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
T ss_conf 85999935777406899999
No 43
>>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} (A:94-285)
Probab=88.86 E-value=0.18 Score=29.30 Aligned_cols=22 Identities=45% Similarity=0.706 Sum_probs=17.8
Q ss_pred CCCEEEEEEECCCCCCCCCCCC
Q ss_conf 7870279983354311122247
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d 237 (509)
.++.+..+.|.||.|||||..-
T Consensus 5 ~~Gei~~liGpsGsGKSTll~~ 26 (192)
T 3dm5_A 5 EKPTILLMVGIQGSGKTTTVAK 26 (192)
T ss_dssp SSSEEEEEECCTTSSHHHHHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHH
T ss_conf 5651465224666664068899
No 44
>>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} (A:392-573)
Probab=88.80 E-value=0.17 Score=29.55 Aligned_cols=20 Identities=15% Similarity=0.295 Sum_probs=16.8
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
.-+.++.|++|+||||++..
T Consensus 5 ~~~I~i~G~~GsGKsTla~~ 24 (182)
T 1m8p_A 5 GFTIFLTGYMNSGKDAIARA 24 (182)
T ss_dssp CEEEEEECSTTSSHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
T ss_conf 65999967899887599999
No 45
>>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus halodurans c-125} (A:)
Probab=88.78 E-value=0.13 Score=30.33 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=16.4
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
...++.|++|+||||++.-
T Consensus 3 klI~i~G~~GsGKTT~a~~ 21 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKR 21 (189)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 3799989999898999999
No 46
>>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, helix-turn-helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} (B:)
Probab=88.78 E-value=0.21 Score=28.87 Aligned_cols=20 Identities=40% Similarity=0.421 Sum_probs=16.6
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
-...||+|.+|||||+|..-
T Consensus 32 p~giLl~GppGtGKT~la~a 51 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRI 51 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
T ss_conf 87999989999899999999
No 47
>>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure, structural genomics, NPPSFA; HET: MSE NAD; 2.12A {Aquifex aeolicus VF5} (A:)
Probab=88.73 E-value=0.45 Score=26.67 Aligned_cols=137 Identities=15% Similarity=0.076 Sum_probs=80.0
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCC---CCCCEEEHHHC---------CCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCC
Q ss_conf 88999997423245666200012---56531210010---------5001568315389999999881980999816746
Q gi|254780826|r 354 EKAVYYFLSGYTAKVAGTEKGVL---KPEATFSACFG---------APFMPRDPVQYGNILKDYIVKYCVDCWLVNTGWT 421 (509)
Q Consensus 354 ~qa~~~F~sGyT~k~agte~g~~---ep~~tfs~cFg---------~PF~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~ 421 (509)
.|+.+..+.++-.++.+..+... +...+....+- -=-+|+.|.-..-+=.+.++.-+-..+|||||
T Consensus 153 G~~~a~~l~~fg~~v~~~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~lplt~~T~~li~~~~l~~mk~ga~lvN~~-- 230 (334)
T 2pi1_A 153 GSRVAXYGLAFGXKVLCYDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHXINEERISLXKDGVYLINTA-- 230 (334)
T ss_dssp HHHHHHHHHHTTCEEEEECSSCCHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECS--
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHCCEEEECCCCCHHHCCCCCHHHHHHCCCCCEEEEEC--
T ss_conf 443321122222233223665402355427635799999844897898178982420665999997379996899714--
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCC-----C-------------CCCCCCCHHHCCHHHHCCC
Q ss_conf 887688732078899999999984960246606678877425-----6-------------2079899656497662599
Q gi|254780826|r 422 AGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSV-----P-------------LEVKGVDRKLLNPRDSWND 483 (509)
Q Consensus 422 Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~~~~~~~~~~f~l~i-----P-------------~~~~gv~~~~l~P~~~w~d 483 (509)
|=++=..-++++|..+|.|..+ -.+.|.=|= | ..+-..|.-++-|...|..
T Consensus 231 --------RG~ivd~~AL~~aL~~g~i~ga---alDV~~~EP~~~~~p~~~~~~~~~~~~~~~L~~~pnv~lTPH~ag~t 299 (334)
T 2pi1_A 231 --------RGKVVDTDALYRAYQRGKFSGL---GLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVIITPHIAYYT 299 (334)
T ss_dssp --------CGGGBCHHHHHHHHHTTCEEEE---EESCCTTHHHHHTTGGGGTCCCHHHHHHHHHHTSTTEEECCSCTTCB
T ss_pred --------CCCCCCHHHHHHHHHHCCCCEE---EEECCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEECCCHHHCH
T ss_conf --------4323322789987651542449---99888878875433222345566532212342599899889520274
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 899999999999999999987512
Q gi|254780826|r 484 VEAYDQKMRELLLMFENNAEKKQI 507 (509)
Q Consensus 484 ~~~Y~~~a~~L~~~F~~Nf~~~~~ 507 (509)
.+++... +..+.+|.++|-.
T Consensus 300 ~~~~~~~----~~~~~~nl~~~~~ 319 (334)
T 2pi1_A 300 DKSLERI----REETVKVVKAFVK 319 (334)
T ss_dssp HHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHC
T ss_conf 9999999----9999999999986
No 48
>>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} (B:)
Probab=88.72 E-value=0.23 Score=28.59 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=17.0
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
-.+.||+|..|||||||...
T Consensus 33 p~giLL~GPpGtGKT~la~a 52 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSA 52 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
T ss_conf 76999806898788999999
No 49
>>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding, cytoplasm, nucleotide-binding; HET: AP5; 1.90A {Aquifex aeolicus} PDB: 2rh5_A (A:1-112,A:171-206)
Probab=88.51 E-value=0.14 Score=30.08 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCCCCCCC----CCCEEEECCCEEEC
Q ss_conf 279983354311122247----88613303110215
Q gi|254780826|r 220 VALFFGLSGTGKTTLSAS----VDRFLIGDDEHGWS 251 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d----~~r~LigDDehgW~ 251 (509)
..+++|.+|+|||||+.. -+-..|.-|...|.
T Consensus 2 iI~I~G~pGSGKTTlAk~LA~~lg~~~i~~d~l~~~ 37 (148)
T 2rgx_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILRE 37 (148)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCEEECHHHHHHH
T ss_conf 899989999987999999999879917878999999
No 50
>>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} (A:1-335)
Probab=88.40 E-value=0.2 Score=29.03 Aligned_cols=31 Identities=13% Similarity=-0.005 Sum_probs=21.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 6887320788999999999849602466066
Q gi|254780826|r 425 YGEGYRMPLSVTRALLKAIFDNSIKSVPYRV 455 (509)
Q Consensus 425 ~g~G~Ri~l~~Tr~ii~ai~~g~l~~~~~~~ 455 (509)
...|.+..-+..+.-+..++.|.+...++..
T Consensus 267 ~~~~~~~~~~~~~~~l~~~le~~~~~~~~~~ 297 (335)
T 1g41_A 267 EYSGADVSREGVQRDLLPLVEGSTVSTKHGM 297 (335)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCCEEEETTEE
T ss_pred CCCCCCCHHCCCHHHHHHHCCCCCCCCCCCC
T ss_conf 4554420100004665530245444457887
No 51
>>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} (A:)
Probab=88.34 E-value=0.22 Score=28.73 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=17.9
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
+.-..++.|.+|+||||++..
T Consensus 5 k~~~I~i~G~~GsGKTT~a~~ 25 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCAN 25 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
T ss_conf 994899989999988999999
No 52
>>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} (A:)
Probab=88.30 E-value=0.19 Score=29.13 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=18.2
Q ss_pred CCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 77870279983354311122247
Q gi|254780826|r 215 KEKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 215 ~~~~d~alfFGLSGTGKTTLS~d 237 (509)
....-+.++-|++|+||||++.-
T Consensus 17 ~~~~~~I~i~G~~GsGKsTla~~ 39 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVK 39 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHH
T ss_conf 99974799989999998999999
No 53
>>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori 26695} PDB: 1zui_A* (A:)
Probab=88.08 E-value=0.15 Score=29.90 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=24.7
Q ss_pred EEEEEEECCCCCCCCCCC----CCCCEEEECCCEEECCCC
Q ss_conf 027998335431112224----788613303110215674
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA----SVDRFLIGDDEHGWSKEG 254 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~----d~~r~LigDDehgW~d~g 254 (509)
-..++.|+||+||||+.. .-+...+.+|...|...+
T Consensus 8 ~~I~i~G~~GsGKtT~a~~La~~l~~~~i~~d~~~~~~~~ 47 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVG 47 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCHHHHCC
T ss_conf 6589999999989999999999969998966721433202
No 54
>>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6- bisphosphatase; transferase (phospho), hydrolase (phospho), glycolysis, bifunctional enzyme; HET: ATG; 2.00A {Rattus norvegicus} (A:1-231)
Probab=88.00 E-value=0.17 Score=29.53 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=20.7
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 24534777870279983354311122247
Q gi|254780826|r 209 CSINMDKEKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 209 csan~~~~~~d~alfFGLSGTGKTTLS~d 237 (509)
++......+.-+.+|-||+|+||||++.-
T Consensus 30 ~~~~~~~~~~~vI~~vGlpGsGKTT~a~~ 58 (231)
T 1bif_A 30 QRGVCMTNCPTLIVMVGLPARGKTYISKK 58 (231)
T ss_dssp --------CCEEEEEECCTTSSHHHHHHH
T ss_pred CCCCCCCCCCEEEEEECCCCCCHHHHHHH
T ss_conf 66766789996999989999998999999
No 55
>>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* (A:)
Probab=87.97 E-value=1.9 Score=22.54 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=16.7
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
.-+.++-|.||+|||||+.-
T Consensus 21 ~~iI~i~G~~GsGKtTla~~ 40 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKN 40 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHH
T ss_conf 29999999998769999999
No 56
>>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A (W:96-285)
Probab=87.95 E-value=0.2 Score=29.00 Aligned_cols=21 Identities=48% Similarity=0.846 Sum_probs=17.5
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
++.+..|.|.||.|||||-.-
T Consensus 5 kg~iv~ivGpnG~GKSTll~~ 25 (190)
T 2j37_W 5 KQNVIMFVGLQGSGKTTTCSK 25 (190)
T ss_dssp --EEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCCCCHHHH
T ss_conf 985999735755675325999
No 57
>>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} (B:1-233)
Probab=87.94 E-value=0.16 Score=29.69 Aligned_cols=20 Identities=45% Similarity=0.574 Sum_probs=17.2
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
.-+.++.|++|+||||++.-
T Consensus 52 ~~~I~i~G~~GsGKTTia~~ 71 (233)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMA 71 (233)
T ss_dssp CEEEEEECSTTSSHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
T ss_conf 77999989999989999999
No 58
>>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} (A:1-114)
Probab=87.90 E-value=0.16 Score=29.67 Aligned_cols=19 Identities=32% Similarity=0.580 Sum_probs=15.9
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
.+.++-|++|+||||++..
T Consensus 3 ~viil~G~pGsGKTT~a~~ 21 (114)
T 1ly1_A 3 KIILTIGCPGSGKSTWARE 21 (114)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 7999989899998999999
No 59
>>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} (A:)
Probab=87.85 E-value=0.17 Score=29.41 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=16.8
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-..++.|++|+||||++.-
T Consensus 13 ~~I~i~G~~GsGKtT~a~~ 31 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEK 31 (199)
T ss_dssp CEEEEEECTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 5899989999998999999
No 60
>>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* (A:99-285)
Probab=87.77 E-value=0.2 Score=29.02 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=18.0
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
+..+.+|+|.+|.||||+.+.
T Consensus 6 ~~~ii~l~G~~GvGKTT~a~~ 26 (187)
T 2px0_A 6 HSKYIVLFGSTGAGKTTTLAK 26 (187)
T ss_dssp CSSEEEEEESTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
T ss_conf 787799973666326669999
No 61
>>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A (A:1-300)
Probab=87.72 E-value=0.18 Score=29.36 Aligned_cols=51 Identities=20% Similarity=0.189 Sum_probs=29.5
Q ss_pred EECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 641367888778999999862410787993124534777870279983354311122247
Q gi|254780826|r 178 IGGTSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 178 I~GT~YaGEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d 237 (509)
|+|. .+.|+-+--+.-+.+-... .-..|...-...||||..|||||+|...
T Consensus 136 i~gl---~~~K~~i~e~i~~~~~~~~------~~~~g~~~~~giLL~GPPGtGKT~laka 186 (300)
T 2zan_A 136 VAGL---EGAKEALKEAVILPIKFPH------LFTGKRTPWRGILLFGPPGTGKSYLAKA 186 (300)
T ss_dssp SCSC---HHHHHHHHHHHTHHHHCTT------TTSGGGCCCSEEEEECSTTSSHHHHHHH
T ss_pred HCCH---HHHHHHHHHHHHHHHHCHH------HHCCCCCCCCCEEEECCCCCCHHHHHHH
T ss_conf 4479---9999999999997874989------7558999987137779999878899999
No 62
>>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, structural genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} (A:1-61,A:124-208)
Probab=87.66 E-value=0.25 Score=28.36 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=17.7
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
+..+..+-|++|+||||+++.
T Consensus 21 ~~~vI~i~G~~GsGKTT~~~~ 41 (146)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNP 41 (146)
T ss_dssp SCEEEEEECCTTSCTHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
T ss_conf 958999889899989999999
No 63
>>2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A {Staphylococcus aureus} PDB: 2cck_A 2ccg_A* (A:)
Probab=87.65 E-value=0.17 Score=29.50 Aligned_cols=19 Identities=37% Similarity=0.494 Sum_probs=16.3
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-..++.|.||+|||||+.-
T Consensus 3 ~iI~i~G~~GsGKTTla~~ 21 (205)
T 2ccj_A 3 AFITFEGPEGSGKTTVINE 21 (205)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 5899989988859999999
No 64
>>3hdt_A Putative kinase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940} (A:)
Probab=87.63 E-value=0.23 Score=28.64 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=17.3
Q ss_pred CCCEEEEEEECCCCCCCCCCCC
Q ss_conf 7870279983354311122247
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d 237 (509)
++.-+.++.|+||+|||||+..
T Consensus 12 ~~~~~I~i~G~~GsGKSTla~~ 33 (223)
T 3hdt_A 12 NKNLIITIEREYGSGGRIVGKK 33 (223)
T ss_dssp CCCEEEEEEECTTSCHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHH
T ss_conf 8997998458998997999999
No 65
>>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} (A:1-167)
Probab=87.54 E-value=0.16 Score=29.72 Aligned_cols=19 Identities=47% Similarity=0.712 Sum_probs=16.3
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
...||.|..|||||+|...
T Consensus 39 ~~iLl~GppGtGKT~lA~a 57 (167)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHV 57 (167)
T ss_dssp CCCEEECCTTCCCHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 7599889899889999999
No 66
>>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleotide binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} (A:)
Probab=87.53 E-value=0.2 Score=28.95 Aligned_cols=19 Identities=21% Similarity=0.337 Sum_probs=16.4
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-+.++.|.+|+||||++..
T Consensus 4 ~~I~i~G~~GsGKtTla~~ 22 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRC 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 3999989999998999999
No 67
>>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* (A:1-262)
Probab=87.47 E-value=0.22 Score=28.75 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=17.0
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
....+|+|.+|||||+|..-
T Consensus 130 ~~~~ll~GppGtGKT~La~a 149 (262)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQS 149 (262)
T ss_dssp SCCEEEECSSSSSHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHH
T ss_conf 78569976877561599999
No 68
>>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase; 2.10A {Mycobacterium tuberculosis} (A:1-50,A:103-207)
Probab=87.46 E-value=0.21 Score=28.86 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=16.9
Q ss_pred CCEEEEEEECCCCCCCCCCC
Q ss_conf 87027998335431112224
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~ 236 (509)
.+.+..+.|.||.|||||-.
T Consensus 19 ~g~~~~~~GpsG~GKsTll~ 38 (155)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVR 38 (155)
T ss_dssp CCCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
T ss_conf 88089998989999999999
No 69
>>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* (A:)
Probab=87.39 E-value=0.18 Score=29.32 Aligned_cols=31 Identities=23% Similarity=0.286 Sum_probs=20.3
Q ss_pred EEEEEEECCCCCCCCCCCC----CCCEEEECCCEE
Q ss_conf 0279983354311122247----886133031102
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS----VDRFLIGDDEHG 249 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d----~~r~LigDDehg 249 (509)
-..++.|.+|+||||++.- -+...+--|...
T Consensus 8 ~~I~l~G~~GsGKSTlak~La~~l~~~~i~~d~~~ 42 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLL 42 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCEEECHHHHH
T ss_conf 53999899999879999999999799788599999
No 70
>>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} (C:92-279)
Probab=87.35 E-value=0.3 Score=27.89 Aligned_cols=21 Identities=48% Similarity=0.803 Sum_probs=17.4
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
.+.+..+.|.||.|||||-.-
T Consensus 7 ~Geiv~ivGpnGsGKSTll~~ 27 (188)
T 2v3c_C 7 KQNVILLVGIQGSGKTTTAAK 27 (188)
T ss_dssp SCCCEEEECCSSSSTTHHHHH
T ss_pred CCEEEEEECCCCCCCHHHHHH
T ss_conf 641799612312362078899
No 71
>>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} (A:392-511)
Probab=87.29 E-value=0.14 Score=30.07 Aligned_cols=25 Identities=8% Similarity=-0.084 Sum_probs=19.4
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCEE
Q ss_conf 7027998335431112224788613
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSASVDRFL 242 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d~~r~L 242 (509)
+-+..|-||||+|||||+..=.+.|
T Consensus 4 g~~iwlTGlsgsGKsTlA~aL~~~L 28 (120)
T 1g8f_A 4 GFSIVLGNSLTVSREQLSIALLSTF 28 (120)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 3599972799988899999999999
No 72
>>3bos_A Putative DNA replication factor; YP_927791.1, putative DNA replication regulator HDA, structural genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis SB2B} (A:1-175)
Probab=87.25 E-value=0.24 Score=28.49 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=17.5
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
.....+|+|..|||||+|...
T Consensus 51 ~~~~ill~GppGtGKT~la~a 71 (175)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHA 71 (175)
T ss_dssp SCSEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
T ss_conf 987499989986668899999
No 73
>>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} (A:)
Probab=87.15 E-value=0.19 Score=29.19 Aligned_cols=19 Identities=37% Similarity=0.503 Sum_probs=16.4
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-+.++-|++|+||||++..
T Consensus 4 ~iI~i~G~~GsGKtTla~~ 22 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQL 22 (192)
T ss_dssp CEEEEECCTTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 8899989999698999999
No 74
>>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} (A:365-552)
Probab=87.10 E-value=0.17 Score=29.41 Aligned_cols=19 Identities=47% Similarity=0.733 Sum_probs=16.2
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-+.++.|++|+|||||+.-
T Consensus 6 ~~I~i~G~~GsGKTTla~~ 24 (188)
T 3cr8_A 6 FTVFFTGLSGAGKSTLARA 24 (188)
T ss_dssp EEEEEEESSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 4999978888877289999
No 75
>>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, shikimate pathway, nucleotide-binding, amino-acid biosynthesis; 2.10A {Aquifex aeolicus} (A:)
Probab=86.91 E-value=0.18 Score=29.37 Aligned_cols=17 Identities=24% Similarity=0.497 Sum_probs=14.8
Q ss_pred EEEEECCCCCCCCCCCC
Q ss_conf 79983354311122247
Q gi|254780826|r 221 ALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 221 alfFGLSGTGKTTLS~d 237 (509)
.++.|++|+||||++.-
T Consensus 3 I~i~G~~GsGKTTla~~ 19 (168)
T 2pt5_A 3 IYLIGFXCSGKSTVGSL 19 (168)
T ss_dssp EEEESCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
T ss_conf 99988999988999999
No 76
>>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class member, structural genomics; 2.20A {Eubacterium ventriosum atcc 27560} (A:)
Probab=86.90 E-value=0.24 Score=28.53 Aligned_cols=19 Identities=11% Similarity=0.022 Sum_probs=16.6
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-+.++.|.+|+||||++.-
T Consensus 7 ~~I~i~G~~GsGKsTia~~ 25 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKK 25 (201)
T ss_dssp CEEEEEECTTSSHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHH
T ss_conf 5899648998887999999
No 77
>>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} (A:1-365)
Probab=86.78 E-value=0.22 Score=28.80 Aligned_cols=18 Identities=44% Similarity=0.634 Sum_probs=15.8
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
...||+|..|||||||..
T Consensus 64 ~~iLl~GPpGtGKT~la~ 81 (365)
T 2c9o_A 64 RAVLLAGPPGTGKTALAL 81 (365)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
T ss_conf 779998999988999999
No 78
>>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide kinase; HET: NAD; 2.90A {Haemophilus influenzae} (A:162-365)
Probab=86.74 E-value=0.19 Score=29.16 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=16.5
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-..++.|.+|+|||||+..
T Consensus 10 ~~I~i~G~~GsGKtTla~~ 28 (204)
T 1lw7_A 10 KTVAILGGESSGKSVLVNK 28 (204)
T ss_dssp EEEEEECCTTSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 3899982787887999999
No 79
>>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* (C:)
Probab=86.73 E-value=0.22 Score=28.67 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=17.0
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+++..+.|.+|+|||||-.-
T Consensus 26 Gei~~liGpNGaGKSTll~~ 45 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLAR 45 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
T ss_conf 98999999999819999999
No 80
>>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* (A:)
Probab=86.65 E-value=0.2 Score=29.02 Aligned_cols=19 Identities=37% Similarity=0.555 Sum_probs=16.8
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
...+++|.+|||||+|..-
T Consensus 39 ~~ilL~GppGtGKT~la~a 57 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVA 57 (180)
T ss_dssp CEEEECCSSSSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 8799999899989999999
No 81
>>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} (A:)
Probab=86.54 E-value=0.15 Score=29.75 Aligned_cols=71 Identities=24% Similarity=0.340 Sum_probs=36.7
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCEEEECC-CEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCEE
Q ss_conf 870279983354311122247886133031-10215674123455532110135833351358875301103124005
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSASVDRFLIGDD-EHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVV 293 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d~~r~LigDD-ehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailENV~~ 293 (509)
.+....+.|.||+|||||..-=.+.+.-+. +.-++..-+-+...--+.+.+.+-+ -+|.+| .++|.||+.+
T Consensus 27 ~G~~vaivG~sGsGKSTLl~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~-Q~~~lf-----~~Tv~eNi~~ 98 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVS-QDSAIM-----AGTIRENLTY 98 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEEC-CSSCCC-----CEEHHHHTTS
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEEE-CCCCCC-----CCCHHHHCCC
T ss_conf 99999999999981999999996687789638999999974016999973459992-688436-----5658762023
No 82
>>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} (A:)
Probab=86.32 E-value=0.24 Score=28.47 Aligned_cols=19 Identities=42% Similarity=0.464 Sum_probs=16.6
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-..++.|.+|+||||++..
T Consensus 6 ~iI~i~G~~GsGKsTla~~ 24 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNI 24 (216)
T ss_dssp CEEEEEECSSSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 4899989988879999999
No 83
>>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} (A:1-177)
Probab=86.27 E-value=0.74 Score=25.24 Aligned_cols=47 Identities=23% Similarity=0.347 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 88778999999862410787993124534777870279983354311122247
Q gi|254780826|r 185 GEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 185 GEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d 237 (509)
.+.|+-+=.++.++...+-.... .+ ..-...|++|.+|||||.|...
T Consensus 12 ~~~k~~l~~~i~~~~~~~~~~~~----~~--~~~~giLL~GPpGtGKT~la~a 58 (177)
T 2qz4_A 12 HEAKLEVREFVDYLKSPERFLQL----GA--KVPKGALLLGPPGCGKTLLAKA 58 (177)
T ss_dssp HHHHHHHHHHHHHHHCCC----------C--CCCCEEEEESCTTSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHC----CC--CCCCCEEEECCCCCCCCHHHHH
T ss_conf 99999999999997699999975----99--9998438757999884215688
No 84
>>1nn5_A Similar to deoxythymidylate kinase (thymidylate kinase); P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} (A:)
Probab=86.22 E-value=0.29 Score=27.96 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=17.0
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
.-..++.|.||+||||++..
T Consensus 9 ~~~I~i~G~~GsGKST~a~~ 28 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRK 28 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
T ss_conf 54999989988889999999
No 85
>>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} (A:)
Probab=86.20 E-value=0.24 Score=28.46 Aligned_cols=19 Identities=26% Similarity=0.545 Sum_probs=16.4
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
...||.|..||||||+.--
T Consensus 44 ~~~Ll~GppGtGKT~~A~~ 62 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEG 62 (195)
T ss_dssp CEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
T ss_conf 9946860798782899999
No 86
>>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} (X:157-348)
Probab=86.01 E-value=0.23 Score=28.58 Aligned_cols=19 Identities=37% Similarity=0.636 Sum_probs=16.5
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
...||+|..||||||+..-
T Consensus 52 ~~iLL~GPPGtGKT~la~~ 70 (192)
T 1r6b_X 52 NNPLLVGESGVGKTAIAEG 70 (192)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHH
T ss_conf 8727865775448999999
No 87
>>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} (A:1-200)
Probab=86.01 E-value=0.3 Score=27.85 Aligned_cols=19 Identities=47% Similarity=0.809 Sum_probs=16.5
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
...++.|.+|||||||...
T Consensus 45 ~~ili~Gp~G~GKTtla~~ 63 (200)
T 2v1u_A 45 SNALLYGLTGTGKTAVARL 63 (200)
T ss_dssp CCEEECBCTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 8499989997829999999
No 88
>>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} (A:1-169)
Probab=85.98 E-value=0.21 Score=28.82 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=16.1
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
...++.|++|+||||++..
T Consensus 3 ~~I~i~G~~GsGKtTiA~~ 21 (169)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRR 21 (169)
T ss_dssp CSEEEECSTTSSHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHH
T ss_conf 9899988999988999999
No 89
>>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} (A:)
Probab=85.86 E-value=0.26 Score=28.24 Aligned_cols=18 Identities=33% Similarity=0.680 Sum_probs=15.5
Q ss_pred EEEEEECCCCCCCCCCCC
Q ss_conf 279983354311122247
Q gi|254780826|r 220 VALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d 237 (509)
+.++-|++|+||||++..
T Consensus 3 iI~i~G~~GsGKTT~a~~ 20 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAK 20 (194)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
T ss_conf 999989999698999999
No 90
>>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} (A:)
Probab=85.86 E-value=0.27 Score=28.17 Aligned_cols=20 Identities=35% Similarity=0.414 Sum_probs=16.9
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
.-..++.|.+|+||||++..
T Consensus 3 ~~~I~i~G~~GsGKsTla~~ 22 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
T ss_conf 70999989999998999999
No 91
>>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} (A:1-185)
Probab=85.75 E-value=0.26 Score=28.23 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 88778999999862410787993124534777870279983354311122247
Q gi|254780826|r 185 GEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 185 GEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d 237 (509)
.++|+-+-.+..++...+.+ ...+.......|++|.+|||||+|...
T Consensus 22 ~~~k~~l~~~~~~~~~~~~~------~~~g~~~~~giLL~GppGtGKT~la~a 68 (185)
T 2ce7_A 22 EEAIEELKEVVEFLKDPSKF------NRIGARMPKGILLVGPPGTGKTLLARA 68 (185)
T ss_dssp HHHHHHHHHHHHHHHCTHHH------HTTTCCCCSEEEEECCTTSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHH------HHCCCCCCCEEEEECCCCCCHHHHHHH
T ss_conf 99999999999986699999------876999996599979999988999999
No 92
>>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} (A:)
Probab=85.63 E-value=0.33 Score=27.56 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=17.1
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
..-..++.|++|+||||++.-
T Consensus 24 ~~~~I~i~G~~GsGKsTva~~ 44 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVE 44 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
T ss_conf 987999989999998999999
No 93
>>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} (A:)
Probab=85.62 E-value=0.23 Score=28.56 Aligned_cols=19 Identities=37% Similarity=0.761 Sum_probs=16.4
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
...++.|++|+||||++.-
T Consensus 5 ~~I~i~G~~GsGKsTia~~ 23 (175)
T 1via_A 5 KNIVFIGFXGSGKSTLARA 23 (175)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 8499985899989999999
No 94
>>1w5s_A ORC2; CDC6, DNA replication initiation, DNA binding protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} (A:1-214)
Probab=85.57 E-value=0.14 Score=30.07 Aligned_cols=19 Identities=37% Similarity=0.314 Sum_probs=16.0
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
.+.++.|.+|||||||...
T Consensus 53 ~~ill~GppGtGKT~lak~ 71 (214)
T 1w5s_A 53 MIYGSIGRVGIGKTTLAKF 71 (214)
T ss_dssp EEEECTTCCSSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 8986468998689999999
No 95
>>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (A:1-208)
Probab=85.44 E-value=0.24 Score=28.52 Aligned_cols=53 Identities=15% Similarity=0.055 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 888778999999862410787993124534777870279983354311122247
Q gi|254780826|r 184 AGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 184 aGEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d 237 (509)
..++|+.+-..+..........+- .....++.--...||+|..||||||+...
T Consensus 44 ~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Ll~GPpGtGKT~~A~~ 96 (208)
T 1sxj_A 44 NKGSVMKLKNWLANWENSKKNSFK-HAGKDGSGVFRAAMLYGPPGIGKTTAAHL 96 (208)
T ss_dssp CHHHHHHHHHHHHTHHHHHHTTTC-CCCTTSTTSCSEEEEECSTTSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCEEEEECCCCHHHHHHHHH
T ss_conf 799999999999862420233332-00024588877799989997159999999
No 96
>>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} (A:)
Probab=85.33 E-value=0.1 Score=30.90 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=17.2
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
.+....+-|.||.|||||..-
T Consensus 34 ~G~~~~ivG~sGsGKSTL~~l 54 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKL 54 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHH
T ss_conf 999999999999869999999
No 97
>>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* (A:)
Probab=85.26 E-value=0.27 Score=28.16 Aligned_cols=18 Identities=44% Similarity=0.689 Sum_probs=15.1
Q ss_pred EEEEEECCCCCCCCCCCC
Q ss_conf 279983354311122247
Q gi|254780826|r 220 VALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d 237 (509)
..++.|.+|+||||++.-
T Consensus 2 iI~i~G~~GsGKtTla~~ 19 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAE 19 (205)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
T ss_conf 899988988889999999
No 98
>>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} (A:)
Probab=85.13 E-value=0.28 Score=28.03 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=16.3
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-+..+-|+||+|||||+.-
T Consensus 6 ~iIgI~G~sGSGKTTla~~ 24 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHT 24 (290)
T ss_dssp CEEEEESCC---CCTHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 7999989987819999999
No 99
>>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} (A:1-179)
Probab=85.04 E-value=0.27 Score=28.19 Aligned_cols=19 Identities=47% Similarity=0.594 Sum_probs=16.3
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
...||.|..||||||+..-
T Consensus 52 ~~iLl~GppGtGKT~~A~~ 70 (179)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHI 70 (179)
T ss_dssp CCEEEESSTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 8178889899889999999
No 100
>>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, replication initiation; HET: ADP; 2.70A {Aquifex aeolicus} (A:1-166)
Probab=85.04 E-value=0.3 Score=27.85 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=17.4
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
.....+|+|.+|||||+|..-
T Consensus 36 ~~~~~ll~GppGtGKT~la~a 56 (166)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQA 56 (166)
T ss_dssp SCSSEEEECSSSSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
T ss_conf 676189888999989999999
No 101
>>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* (A:1-42,A:107-331)
Probab=84.95 E-value=0.28 Score=28.02 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=15.5
Q ss_pred EEEEEECCCCCCCCCCCC
Q ss_conf 279983354311122247
Q gi|254780826|r 220 VALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d 237 (509)
..||+|..|||||||...
T Consensus 61 ~iLl~GPpGtGKTtla~a 78 (267)
T 2vhj_A 61 MVIVTGKGNSGKTPLVHA 78 (267)
T ss_dssp EEEEECSCSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
T ss_conf 177678999879999999
No 102
>>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:1-244,A:316-360)
Probab=84.92 E-value=0.39 Score=27.08 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=17.6
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+.+..++|.+|||||||...
T Consensus 34 G~iteI~G~pGsGKTtL~Lq 53 (289)
T 3cmw_A 34 GRIVEIYGPESSGKTTLTLQ 53 (289)
T ss_dssp TSEEEEECSTTSSHHHHHHH
T ss_pred CEEEEEECCCCCCCCEEEHH
T ss_conf 30699867766787156036
No 103
>>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural genomics, NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii str} (A:)
Probab=84.89 E-value=0.28 Score=28.00 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=16.4
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-..++.|.+|+||||++..
T Consensus 5 ~~I~i~G~~GsGKtTla~~ 23 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATL 23 (213)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 0899989998749999999
No 104
>>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* (A:374-660)
Probab=84.85 E-value=0.11 Score=30.72 Aligned_cols=70 Identities=21% Similarity=0.255 Sum_probs=35.9
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCEEEECCCEE-ECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCEE
Q ss_conf 70279983354311122247886133031102-15674123455532110135833351358875301103124005
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSASVDRFLIGDDEHG-WSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVV 293 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d~~r~LigDDehg-W~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailENV~~ 293 (509)
+....+.|.||+|||||..-=.|.+--....+ |+..-+-.+...-+.+.|.+-. -+|.+|. +++.||+.+
T Consensus 43 Ge~i~ivG~sGsGKSTll~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~-Q~p~lf~-----~ti~eNi~~ 113 (287)
T 3g5u_A 43 GQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVS-QEPVLFA-----TTIAENIRY 113 (287)
T ss_dssp TCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEEC-SSCCCCS-----SCHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCHHCCHHHHHHHCCCCC-CCCEEEC-----CCCCCCCCC
T ss_conf 8557853898514789999863457577844997786600102544221023467-8761136-----710114444
No 105
>>3dhw_C Methionine import ATP-binding protein METN; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} (C:1-245)
Probab=84.84 E-value=0.4 Score=27.00 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=34.3
Q ss_pred HHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHH---HHHHHHCCEEEEEEC
Q ss_conf 4418588999997423245666200012565312100105001568315389999---999881980999816
Q gi|254780826|r 349 AYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILK---DYIVKYCVDCWLVNT 418 (509)
Q Consensus 349 sklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~---~~i~~~~~~vyLvNT 418 (509)
..||..|..- +|=.-+-+.+|.-.+- -+|+=.+.|..-.+++. +.-++.+..+-+|--
T Consensus 139 ~~LSGGq~QR---------vaIARaL~~~P~ill~---DEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTH 199 (245)
T 3dhw_C 139 SNLSGGQKQR---------VAIARALASNPKVLLC---DEATSALDPATTRSILELLKDINRRLGLTILLITH 199 (245)
T ss_dssp SCCCHHHHHH---------HHHHHHHHTCCSEEEE---ESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBS
T ss_pred CCCCHHHHHH---------HHHHHHHHCCCCEEEE---CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 4189888589---------9998876239978985---47656589889999999999998713986999918
No 106
>>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (E:1-192)
Probab=84.83 E-value=0.49 Score=26.43 Aligned_cols=19 Identities=37% Similarity=0.565 Sum_probs=16.4
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
...||.|.+|+||||+...
T Consensus 37 ~~lLl~Gp~G~GKt~~A~~ 55 (192)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMA 55 (192)
T ss_dssp CCEEEECSTTSSHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 8698889799989999999
No 107
>>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, ATP-binding; 2.15A {Ehrlichia chaffeensis} (A:)
Probab=84.78 E-value=0.36 Score=27.33 Aligned_cols=33 Identities=27% Similarity=0.216 Sum_probs=22.2
Q ss_pred EEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 7993124534777870279983354311122247
Q gi|254780826|r 204 IMPMHCSINMDKEKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 204 ~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d 237 (509)
.++-|......+. .-..++.|.||+||||++..
T Consensus 8 ~~~~~~~~~~~~~-~~~I~i~G~~GsGKST~~~~ 40 (223)
T 3ld9_A 8 HMGTLEAQTQGPG-SMFITFEGIDGSGKTTQSHL 40 (223)
T ss_dssp -----------CC-CEEEEEECSTTSSHHHHHHH
T ss_pred CCCCCCCCCCCCC-CEEEEEECCCCCCHHHHHHH
T ss_conf 0246645778999-60899889988999999999
No 108
>>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A (A:97-299)
Probab=84.71 E-value=0.39 Score=27.07 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=18.0
Q ss_pred CCCEEEEEEECCCCCCCCCCCC
Q ss_conf 7870279983354311122247
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d 237 (509)
.+..+..|-|++|.|||||...
T Consensus 7 ~~~~vI~i~G~~G~GKTTla~k 28 (203)
T 1zu4_A 7 NRLNIFMLVGVNGTGKTTSLAK 28 (203)
T ss_dssp TSCEEEEEESSTTSSHHHHHHH
T ss_pred CCCEEEEEECCCCCCCCHHHHH
T ss_conf 9987999505301353037889
No 109
>>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} (A:)
Probab=84.69 E-value=0.3 Score=27.88 Aligned_cols=19 Identities=37% Similarity=0.331 Sum_probs=16.4
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-..++.|.+|+||||++..
T Consensus 21 ~~I~i~G~~GsGKsT~a~~ 39 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNH 39 (230)
T ss_dssp EEEEEECSTTSCHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 0899888998788999999
No 110
>>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* (A:1-107,A:397-493)
Probab=84.68 E-value=0.34 Score=27.44 Aligned_cols=20 Identities=35% Similarity=0.760 Sum_probs=17.3
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+...+|.|+||+|||||-.|
T Consensus 36 ~~~~~itG~SGsGKStL~~~ 55 (204)
T 2vf7_A 36 DALVVFTGVSGSGKSSLAFG 55 (204)
T ss_dssp SSEEEEESSTTSSHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHH
T ss_conf 87899988988978999989
No 111
>>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} (A:1-131,A:180-233)
Probab=84.61 E-value=0.3 Score=27.86 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=23.8
Q ss_pred CCEEEEEEECCCCCCCCCCCC----CCCEEEECCCEEECC
Q ss_conf 870279983354311122247----886133031102156
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS----VDRFLIGDDEHGWSK 252 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d----~~r~LigDDehgW~d 252 (509)
..-..++.|++|+||||++.- -+...|-.|+..|..
T Consensus 15 r~~~Ivi~G~~GsGKTTia~~La~~l~~~~i~~~~~~~~~ 54 (185)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAM 54 (185)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_conf 9747999899999879999999998698365289999999
No 112
>>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} (1:1-234)
Probab=84.52 E-value=0.33 Score=27.53 Aligned_cols=58 Identities=16% Similarity=0.037 Sum_probs=33.5
Q ss_pred HHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHH---HHHHHHCCEEEEEEC
Q ss_conf 4418588999997423245666200012565312100105001568315389999---999881980999816
Q gi|254780826|r 349 AYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILK---DYIVKYCVDCWLVNT 418 (509)
Q Consensus 349 sklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~---~~i~~~~~~vyLvNT 418 (509)
..||-.|..-- +=.-+=+.+|.-.+ +-+||--+.|....+++. +.-++.+..+-+|--
T Consensus 138 ~~LSGGqkQRv---------~iAraL~~~P~ill---lDEPts~LD~~~~~~i~~~i~~l~~~~g~tii~vtH 198 (234)
T 1g29_1 138 RELSGGQRQRV---------ALGRAIVRKPQVFL---MDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTH 198 (234)
T ss_dssp GGSCHHHHHHH---------HHHHHHHTCCSEEE---EECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEES
T ss_pred HHCCHHHHHHH---------HHHHHHHCCCCEEE---ECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEC
T ss_conf 34899999999---------99999966999899---858765579999999999999999971999999908
No 113
>>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} (A:146-331)
Probab=84.28 E-value=0.29 Score=27.93 Aligned_cols=19 Identities=26% Similarity=0.545 Sum_probs=16.6
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
...||+|..|||||++...
T Consensus 47 ~~~Ll~GpPGtGKT~lara 65 (186)
T 1qvr_A 47 NNPVLIGEPGVGKTAIVEG 65 (186)
T ss_dssp CCCEEEECTTSCHHHHHHH
T ss_pred CCCEEECCCCCCHHHHHHH
T ss_conf 8807977887415099999
No 114
>>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* (A:)
Probab=84.22 E-value=0.32 Score=27.68 Aligned_cols=19 Identities=37% Similarity=0.538 Sum_probs=16.4
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-..++.|.+|+||||++..
T Consensus 5 ~~I~i~G~~GsGKsTl~~~ 23 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMN 23 (204)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 4899989988879999999
No 115
>>1l2t_A Hypothetical ABC transporter ATP-binding protein MJ0796; ABC transporters, ATPase, walker-A, NBD, transport protein; HET: ATP; 1.90A {Methanocaldococcus jannaschii} (A:)
Probab=84.13 E-value=0.41 Score=26.97 Aligned_cols=56 Identities=11% Similarity=-0.015 Sum_probs=29.9
Q ss_pred HHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHH---HHHHHCCEEEEE
Q ss_conf 44185889999974232456662000125653121001050015683153899999---998819809998
Q gi|254780826|r 349 AYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKD---YIVKYCVDCWLV 416 (509)
Q Consensus 349 sklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~---~i~~~~~~vyLv 416 (509)
+.||..|..---+ .-.-+.+|.-.+- =+|+-.+.|..-.+++.- .-+++++.+-+|
T Consensus 144 ~~LSGGq~QRVaI---------AraL~~~P~illl---DEPts~LD~~~~~~v~~~l~~l~~~~g~tvi~v 202 (235)
T 1l2t_A 144 NQLSGGQQQRVAI---------ARALANNPPIILA---DQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVV 202 (235)
T ss_dssp GGSCHHHHHHHHH---------HHHHTTCCSEEEE---ESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHCCHHHHHHHHH---------HHHHCCCCCEEEE---ECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 4579999999999---------9876449999998---088665798999999999999999549999998
No 116
>>1z6g_A Guanylate kinase; structural genomics, SGC, structural genomics consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum 3D7} (A:1-55,A:105-218)
Probab=84.12 E-value=0.36 Score=27.31 Aligned_cols=20 Identities=35% Similarity=0.341 Sum_probs=16.9
Q ss_pred CCEEEEEEECCCCCCCCCCC
Q ss_conf 87027998335431112224
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~ 236 (509)
.+...++-|.||.|||||--
T Consensus 22 ~g~~~~i~G~sG~GKsTll~ 41 (169)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIK 41 (169)
T ss_dssp CCCCEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
T ss_conf 88779999999999999999
No 117
>>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} (A:)
Probab=84.10 E-value=0.33 Score=27.60 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=16.1
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-..+|.|.+|+||||++.-
T Consensus 6 ~~I~ieG~~GSGKtT~a~~ 24 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCEL 24 (222)
T ss_dssp CCEEEEESTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 0899989999997999999
No 118
>>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} (A:1-239)
Probab=84.04 E-value=0.41 Score=26.94 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=17.1
Q ss_pred CCCCEEEEEEECCCCCCCCCCC
Q ss_conf 7787027998335431112224
Q gi|254780826|r 215 KEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 215 ~~~~d~alfFGLSGTGKTTLS~ 236 (509)
+.| ....+.|.||.|||||.-
T Consensus 35 ~~G-e~~~liGpsGaGKSTll~ 55 (239)
T 1v43_A 35 KDG-EFLVLLGPSGCGKTTTLR 55 (239)
T ss_dssp CTT-CEEEEECCTTSSHHHHHH
T ss_pred CCC-CEEEEECCCCCHHHHHHH
T ss_conf 999-899999999985999999
No 119
>>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} (A:1-155)
Probab=83.86 E-value=0.42 Score=26.85 Aligned_cols=20 Identities=20% Similarity=0.056 Sum_probs=17.4
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+.+.++.|.+|+|||||...
T Consensus 12 G~i~~i~G~~GsGKTtl~lq 31 (155)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIR 31 (155)
T ss_dssp CEEEEEECSTTSCHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHH
T ss_conf 79999994517788999999
No 120
>>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} (A:)
Probab=83.85 E-value=0.49 Score=26.43 Aligned_cols=20 Identities=45% Similarity=0.398 Sum_probs=16.7
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
.-+..+-|.||+|||||+..
T Consensus 22 ~~iI~I~G~~GsGKtTla~~ 41 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQ 41 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
T ss_conf 88999779873799999999
No 121
>>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} (A:)
Probab=83.74 E-value=0.33 Score=27.57 Aligned_cols=18 Identities=39% Similarity=0.510 Sum_probs=15.2
Q ss_pred EEEEEECCCCCCCCCCCC
Q ss_conf 279983354311122247
Q gi|254780826|r 220 VALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d 237 (509)
+.++-|.+|||||||-..
T Consensus 3 ~~~l~G~~G~GKTTl~~~ 20 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHK 20 (189)
T ss_dssp CEEEESCCSSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
T ss_conf 999988999809999999
No 122
>>1um8_A ATP-dependent CLP protease ATP-binding subunit CLPX; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori 26695} (A:1-272)
Probab=83.63 E-value=0.32 Score=27.62 Aligned_cols=18 Identities=33% Similarity=0.613 Sum_probs=15.7
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
.+.||+|.+|||||.|..
T Consensus 73 ~giLL~GPPGtGKT~lak 90 (272)
T 1um8_A 73 SNILLIGPTGSGKTLMAQ 90 (272)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCCCHHHHHH
T ss_conf 543653899875799999
No 123
>>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} (K:1-243)
Probab=83.55 E-value=0.33 Score=27.56 Aligned_cols=58 Identities=16% Similarity=0.074 Sum_probs=33.8
Q ss_pred HHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHH---HHHHHHCCEEEEEEC
Q ss_conf 4418588999997423245666200012565312100105001568315389999---999881980999816
Q gi|254780826|r 349 AYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILK---DYIVKYCVDCWLVNT 418 (509)
Q Consensus 349 sklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~---~~i~~~~~~vyLvNT 418 (509)
..||-.|-.-- +=.-.-+.+|.-.+- -+||--+.|....+++. +.-++.+..+-+|-.
T Consensus 139 ~~LSGGqkQRV---------aiAraL~~~P~illl---DEPt~~LD~~~~~~i~~~l~~l~~~~g~tii~vTH 199 (243)
T 1oxx_K 139 RELSGAQQQRV---------ALARALVKDPSLLLL---DEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSH 199 (243)
T ss_dssp GGSCHHHHHHH---------HHHHHHTTCCSEEEE---ESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEES
T ss_pred CCCCHHHHHHH---------HHHHHHCCCCCEEEE---CCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECC
T ss_conf 65799999999---------998754348988997---58864469999999999999999840999999888
No 124
>>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} (A:1-47,A:135-236)
Probab=83.40 E-value=0.46 Score=26.61 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=17.3
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
++.+..+-|.||.|||||..-
T Consensus 15 ~g~~~~i~G~sG~GKsTl~~~ 35 (149)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKI 35 (149)
T ss_dssp CCCEEEEECSSCSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
T ss_conf 672899879997888999999
No 125
>>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A* (A:)
Probab=83.33 E-value=0.31 Score=27.78 Aligned_cols=38 Identities=0% Similarity=-0.233 Sum_probs=24.5
Q ss_pred HHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 9999999881980999816746887688732078899999999984960
Q gi|254780826|r 400 NILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSI 448 (509)
Q Consensus 400 ~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l 448 (509)
+...+........+.+||++ -+++.+..-|..++...+
T Consensus 156 ~~~~~~~~~~~~~~~vi~~~-----------~~~e~v~~~i~~~i~~~l 193 (197)
T 2z0h_A 156 EGYLVLAREHPERIVVLDGK-----------RSIEEIHRDVVREVKRRW 193 (197)
T ss_dssp HHHHHHHHHCTTTEEEEETT-----------SCHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHCCCCEEEEECC-----------CCHHHHHHHHHHHHHHHH
T ss_conf 99999998689968998699-----------999999999999999985
No 126
>>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} (A:1-114)
Probab=83.26 E-value=0.37 Score=27.26 Aligned_cols=19 Identities=32% Similarity=0.580 Sum_probs=16.2
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
.+.++-|++|+||||++..
T Consensus 3 ~iI~l~G~pGsGKTT~a~~ 21 (114)
T 1ltq_A 3 KIILTIGCPGSGKSTWARE 21 (114)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 8999989999978999999
No 127
>>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} (A:1-183,A:295-339)
Probab=83.01 E-value=0.47 Score=26.54 Aligned_cols=21 Identities=43% Similarity=0.735 Sum_probs=17.8
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
..-+.++.|.||+|||||+..
T Consensus 39 ~~~iIvI~GpSGSGKStLa~~ 59 (228)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSID 59 (228)
T ss_dssp CCEEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
T ss_conf 886799989885389999999
No 128
>>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} (A:1-196)
Probab=83.00 E-value=0.41 Score=26.93 Aligned_cols=19 Identities=37% Similarity=0.684 Sum_probs=16.5
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
...++.|.+|||||||.-.
T Consensus 46 ~~vli~GppG~GKT~la~~ 64 (196)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKF 64 (196)
T ss_dssp CCEEEEECTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 8389989997819999999
No 129
>>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} (A:1-241)
Probab=82.84 E-value=0.53 Score=26.18 Aligned_cols=58 Identities=16% Similarity=0.068 Sum_probs=38.1
Q ss_pred HHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHH---HHHHHHCCEEEEEEC
Q ss_conf 4418588999997423245666200012565312100105001568315389999---999881980999816
Q gi|254780826|r 349 AYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILK---DYIVKYCVDCWLVNT 418 (509)
Q Consensus 349 sklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~---~~i~~~~~~vyLvNT 418 (509)
..||..|-.-..+. -.-+.+|....- -+|+--+.|....+++. +.+++.+..+-+|-.
T Consensus 137 ~~LSGG~kQRv~iA---------raL~~~P~iLll---DEPt~gLD~~~~~~i~~~l~~~~~~~g~tii~vtH 197 (241)
T 3fvq_A 137 HELSGGQQQRAALA---------RALAPDPELILL---DEPFSALDEQLRRQIREDMIAALRANGKSAVFVSH 197 (241)
T ss_dssp GGSCHHHHHHHHHH---------HHHTTCCSEEEE---ESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred CCCCHHHHHHHHHH---------HHCCCCCCEEEE---CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 32798898788763---------110468876897---68755589999999999999999962999999878
No 130
>>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10} (A:1-115,A:523-619)
Probab=82.81 E-value=0.5 Score=26.38 Aligned_cols=20 Identities=35% Similarity=0.670 Sum_probs=16.8
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+....+.|.||.|||||---
T Consensus 44 Ge~~~liG~sG~GKSTll~~ 63 (212)
T 2r6f_A 44 GKLVVLTGLSGSGKSSLAFD 63 (212)
T ss_dssp TSEEEEEESTTSSHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHH
T ss_conf 97899979988867899999
No 131
>>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.70A {Thermus thermophilus HB8} PDB: 2d2f_A* (A:)
Probab=82.55 E-value=0.45 Score=26.67 Aligned_cols=19 Identities=42% Similarity=0.714 Sum_probs=16.4
Q ss_pred CCEEEEEEECCCCCCCCCC
Q ss_conf 8702799833543111222
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS 235 (509)
.+.+..+.|.||.|||||.
T Consensus 28 ~Gei~~liGpnGaGKSTLl 46 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLG 46 (250)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
T ss_conf 9989999889998899999
No 132
>>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} (A:)
Probab=82.50 E-value=0.49 Score=26.46 Aligned_cols=19 Identities=37% Similarity=0.387 Sum_probs=16.5
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
...+|.|-+|||||+|...
T Consensus 55 ~~l~l~G~~G~GKThLa~a 73 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAA 73 (202)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 7489989998978999999
No 133
>>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} (A:1-231)
Probab=82.46 E-value=0.52 Score=26.27 Aligned_cols=59 Identities=12% Similarity=0.069 Sum_probs=37.6
Q ss_pred HHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHH--HH-HHHCCEEEEEEC
Q ss_conf 444185889999974232456662000125653121001050015683153899999--99-881980999816
Q gi|254780826|r 348 VAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKD--YI-VKYCVDCWLVNT 418 (509)
Q Consensus 348 vsklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~--~i-~~~~~~vyLvNT 418 (509)
...||-.|..---+ .-.=+.+|.-.+- -+|+--+.|....+++.. ++ ++.++.+-+|--
T Consensus 131 p~~LSGGq~QRv~i---------Aral~~~P~ilil---DEPtsgLD~~~~~~i~~~l~~l~~~~g~tvi~vtH 192 (231)
T 2it1_A 131 PWQLSGGQQQRVAI---------ARALVKEPEVLLL---DEPLSNLDALLRLEVRAELKRLQKELGITTVYVTH 192 (231)
T ss_dssp GGGSCHHHHHHHHH---------HHHHTTCCSEEEE---ESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEES
T ss_pred CCCCCCHHHHHHHH---------HHHHCCCCCEEEE---CCCCCCCCHHCCHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 62326407689887---------5232359989986---36554411000230699999999826988999946
No 134
>>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} (A:1-38,A:88-207)
Probab=82.44 E-value=0.52 Score=26.24 Aligned_cols=19 Identities=32% Similarity=0.399 Sum_probs=16.4
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+.+.+++|.||.|||||-.
T Consensus 6 ~~~~~~~g~~g~gk~t~~~ 24 (158)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRK 24 (158)
T ss_dssp CCEEEEECSTTSCHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
T ss_conf 7299999989999999999
No 135
>>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} (A:)
Probab=82.40 E-value=0.42 Score=26.88 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=14.6
Q ss_pred EEEEECCCCCCCCCCCC
Q ss_conf 79983354311122247
Q gi|254780826|r 221 ALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 221 alfFGLSGTGKTTLS~d 237 (509)
.+++|.+|+||||++.-
T Consensus 3 I~i~G~pGsGKtT~a~~ 19 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQF 19 (214)
T ss_dssp EEEEESTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
T ss_conf 99989999987999999
No 136
>>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} (A:1-228)
Probab=82.39 E-value=0.49 Score=26.40 Aligned_cols=58 Identities=17% Similarity=0.164 Sum_probs=33.2
Q ss_pred HHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHH---HHHHHCCEEEEEE
Q ss_conf 444185889999974232456662000125653121001050015683153899999---9988198099981
Q gi|254780826|r 348 VAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKD---YIVKYCVDCWLVN 417 (509)
Q Consensus 348 vsklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~---~i~~~~~~vyLvN 417 (509)
.+.||-.|..-.-+ .-.=+.+|.-..-- +|+--+.|....+++.. .-+++++.+-+|-
T Consensus 124 ~~~LSGGq~QRv~i---------AraL~~~P~iLilD---EPts~LD~~~~~~i~~~l~~l~~~~~~tii~vt 184 (228)
T 2onk_A 124 PARLSGGERQRVAL---------ARALVIQPRLLLLD---EPLSAVDLKTKGVLMEELRFVQREFDVPILHVT 184 (228)
T ss_dssp GGGSCHHHHHHHHH---------HHHHTTCCSSBEEE---STTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHCCHHHHHHHHH---------HHHHHCCCCCEEEC---CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 32389878526987---------55340388703534---864448988987999999999873497699993
No 137
>>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:706-942,A:1014-1055)
Probab=82.31 E-value=0.58 Score=25.94 Aligned_cols=25 Identities=12% Similarity=-0.129 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHCCEEEEEECC
Q ss_conf 3153899999998819809998167
Q gi|254780826|r 395 PVQYGNILKDYIVKYCVDCWLVNTG 419 (509)
Q Consensus 395 p~~ya~ll~~~i~~~~~~vyLvNTG 419 (509)
.......|....+++++-+.++|--
T Consensus 139 ~~~~~~~L~~la~~~~~~vi~tNQ~ 163 (279)
T 3cmw_A 139 MSQAMRKLAGNLKQSNTLLIFINQI 163 (279)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEECE
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 5678899864403566168874245
No 138
>>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens} (B:)
Probab=82.30 E-value=0.68 Score=25.48 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=16.9
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
..-+.++-|.||+||||++.-
T Consensus 10 ~~~~I~i~G~~GsGKsT~a~~ 30 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEA 30 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
T ss_conf 818999989899899999999
No 139
>>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} (A:)
Probab=82.16 E-value=0.15 Score=29.76 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=16.9
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+.+..+-|.||.|||||..-
T Consensus 46 G~~vaivG~sGsGKSTL~~~ 65 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKL 65 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHH
T ss_conf 98999998999809999999
No 140
>>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, alternative splicing, ATP-binding, hydrolase, magnesium; HET: ADP; 2.00A {Homo sapiens} (A:1-250,A:340-357)
Probab=82.14 E-value=0.44 Score=26.72 Aligned_cols=47 Identities=21% Similarity=0.224 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 88778999999862410787993124534777870279983354311122247
Q gi|254780826|r 185 GEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 185 GEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d 237 (509)
.++|+.+-.+....+..... -.+.... ....||+|..|||||++...
T Consensus 90 ~~~k~~l~~~i~~~~~~~~~-----~~~~~~~-~~~iLL~GPPGtGKT~la~a 136 (268)
T 3d8b_A 90 EFAKATIKEIVVWPMLRPDI-----FTGLRGP-PKGILLFGPPGTGKTLIGKC 136 (268)
T ss_dssp HHHHHHHHHHTHHHHHCTTT-----SCGGGSC-CSEEEEESSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHH-----HCCCCCC-CCEEEEECCCCCCHHHHHHH
T ss_conf 99999999999999759897-----5045799-87568878999986699999
No 141
>>1qzx_A SRP54, signal recognition 54 kDa protein; signal recognition particle, protein targeting, signaling protein; 4.00A {Sulfolobus solfataricus} (A:98-290)
Probab=82.11 E-value=0.67 Score=25.55 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=17.7
Q ss_pred CCCEEEEEEECCCCCCCCCCCC
Q ss_conf 7870279983354311122247
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d 237 (509)
.+..+.+|-|+.|.||||+.+.
T Consensus 5 ~~~~vi~itG~~GsGKTT~~~~ 26 (193)
T 1qzx_A 5 KLPFIIMLVGVQGSGKTTTAGK 26 (193)
T ss_dssp SSSEEEEEECSSSSSTTTHHHH
T ss_pred CCCEEEEEECCCCCCCCCHHHH
T ss_conf 8985999975778884204999
No 142
>>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} (X:440-652)
Probab=82.08 E-value=0.44 Score=26.77 Aligned_cols=19 Identities=37% Similarity=0.592 Sum_probs=16.1
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-+.+|.|.+|||||.|.-.
T Consensus 50 ~~~ll~GppG~GKT~lAk~ 68 (213)
T 1r6b_X 50 GSFLFAGPTGVGKTEVTVQ 68 (213)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 0589877887568999999
No 143
>>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferase; nucleoside modification, isopentenyl-tRNA transferase, MIAA, transferase/RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A (A:1-205,A:290-316)
Probab=82.07 E-value=0.57 Score=26.01 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=17.4
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
..-+.++.|.||+|||||+..
T Consensus 9 ~~~iI~I~GpSGsGKttla~~ 29 (232)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIE 29 (232)
T ss_dssp CCEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
T ss_conf 995699989883279999999
No 144
>>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} (A:1-218)
Probab=81.76 E-value=0.52 Score=26.29 Aligned_cols=19 Identities=42% Similarity=0.555 Sum_probs=16.2
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-..|++|..|||||+|.-.
T Consensus 46 ~~iLl~G~pGtGKt~lAr~ 64 (218)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRA 64 (218)
T ss_dssp CCEEEECCGGGCTTHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 7189978999569999999
No 145
>>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} (A:1-196)
Probab=81.57 E-value=0.5 Score=26.39 Aligned_cols=19 Identities=37% Similarity=0.415 Sum_probs=16.4
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
...||.|..|||||+|...
T Consensus 65 ~~iLl~GppGtGKT~la~a 83 (196)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAK 83 (196)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 2699889499988999999
No 146
>>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} (A:277-489)
Probab=81.41 E-value=0.63 Score=25.69 Aligned_cols=47 Identities=23% Similarity=0.301 Sum_probs=27.5
Q ss_pred CCCCEEEEEEECCCCCCCCCCCC------C-CCEEEECCCEEECCCCC-CCCCCCC
Q ss_conf 77870279983354311122247------8-86133031102156741-2345553
Q gi|254780826|r 215 KEKEDVALFFGLSGTGKTTLSAS------V-DRFLIGDDEHGWSKEGV-FNFEGGC 262 (509)
Q Consensus 215 ~~~~d~alfFGLSGTGKTTLS~d------~-~r~LigDDehgW~d~gv-fn~EgGc 262 (509)
+.| +...+.|.||.|||||--- | .-.+..|-..+|...-+ .++.+.+
T Consensus 34 ~~G-eiv~iiG~NGaGKSTllk~i~Gl~~p~~G~v~~~~~~~~~p~~~~~~~~~~~ 88 (213)
T 1yqt_A 34 KKG-EVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTV 88 (213)
T ss_dssp ETT-CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBH
T ss_pred CCC-CEEEEECCCCCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHCCCCCCH
T ss_conf 279-7899952578634224577549862577861330410145022212722003
No 147
>>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} (A:1-237)
Probab=81.40 E-value=0.54 Score=26.15 Aligned_cols=40 Identities=15% Similarity=0.086 Sum_probs=25.2
Q ss_pred CCCCCCCEEEHHHCCCCCCCCHHHHHHHHHH---HHHHHCCEEEEE
Q ss_conf 0125653121001050015683153899999---998819809998
Q gi|254780826|r 374 GVLKPEATFSACFGAPFMPRDPVQYGNILKD---YIVKYCVDCWLV 416 (509)
Q Consensus 374 g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~---~i~~~~~~vyLv 416 (509)
=+.+|.-.+- -+||--+.|....+++.- .-+++++.+-+|
T Consensus 160 l~~~P~illl---DEPts~LD~~~~~~i~~~i~~l~~~~g~tii~i 202 (237)
T 1z47_A 160 LAPRPQVLLF---DEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFV 202 (237)
T ss_dssp HTTCCSEEEE---ESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HCCCCCEEEE---CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 5235663676---487654899999999999999998419999998
No 148
>>1szp_A DNA repair protein RAD51; homologous recombination, asymmetry, RAD51 filament, DNA binding protein; HET: DNA; 3.25A {Saccharomyces cerevisiae} (A:82-321)
Probab=81.39 E-value=0.55 Score=26.12 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=17.7
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+.+.+++|.+|+|||+|...
T Consensus 18 g~i~~I~G~pGsGKT~la~q 37 (240)
T 1szp_A 18 GSITELFGEFRTGKSQLCHT 37 (240)
T ss_dssp SSEEEEEESTTSSHHHHHHH
T ss_pred CEEEEEEECCCCCHHHHHHH
T ss_conf 86899982688609999999
No 149
>>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:357-593,A:665-705)
Probab=81.35 E-value=0.91 Score=24.64 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=17.3
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+.+..++|.+|||||||...
T Consensus 27 G~iteI~G~pGsGKTtl~l~ 46 (278)
T 3cmu_A 27 GRIVEIYGPESSGKTTLTLQ 46 (278)
T ss_dssp TSEEEEECCTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCCEEEEHH
T ss_conf 63799988877884242057
No 150
>>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (B:1-166)
Probab=81.27 E-value=0.1 Score=30.92 Aligned_cols=26 Identities=31% Similarity=0.463 Sum_probs=19.5
Q ss_pred EEEEEEECCCCCCCCCCCCCCCEEEE
Q ss_conf 02799833543111222478861330
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSASVDRFLIG 244 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d~~r~Lig 244 (509)
...||.|..||||||+...--+.|-+
T Consensus 43 ~~~ll~Gp~G~GKt~~a~~~a~~l~~ 68 (166)
T 1sxj_B 43 PHMIISGMPGIGKTTSVHCLAHELLG 68 (166)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 86998894999899999999998669
No 151
>>1e32_A P97; membrane fusion; HET: ADP; 2.9A {Mus musculus} (A:198-371)
Probab=81.26 E-value=0.52 Score=26.28 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 8778999999862410787993124534777870279983354311122247
Q gi|254780826|r 186 EIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 186 EiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d 237 (509)
++|+-+-....+.+..... +....+ .--...||+|.+|||||.+...
T Consensus 14 ~~k~~l~~~i~~~~~~~~~---~~~~g~--~~~~giLl~GppGtGKT~~a~A 60 (174)
T 1e32_A 14 KQLAQIKEMVELPLRHPAL---FKAIGV--KPPRGILLYGPPGTGKTLIARA 60 (174)
T ss_dssp HHHHHHHHHHHHHHHCHHH---HHHCCC--CCCCEEEEECCTTSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHH---HHHCCC--CCCCEEEEECCCCCCHHHHHHH
T ss_conf 9999999999978329999---963799--9884479889899998999999
No 152
>>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} (A:1-67,A:132-252)
Probab=81.25 E-value=0.67 Score=25.51 Aligned_cols=61 Identities=15% Similarity=0.165 Sum_probs=36.0
Q ss_pred EEEEEEECCCCCCCCCCCC--------------CC-CEEEECCCE-EECCCCCCCCCC----CCCCCCCCCCCCCCHHHH
Q ss_conf 0279983354311122247--------------88-613303110-215674123455----532110135833351358
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS--------------VD-RFLIGDDEH-GWSKEGVFNFEG----GCYAKSINLSKETEPEIF 278 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d--------------~~-r~LigDDeh-gW~d~gvfn~Eg----GcYaK~i~Ls~~~EP~I~ 278 (509)
-+..+.|.+|+|||||+.. +. ..+--||-| .|==+|.+.+-. .+....|=++...+-...
T Consensus 23 ~~i~i~G~~gsGKst~a~~l~~~l~~~~~~~~~~~~~~~~~D~f~dviIvEG~y~l~~~~l~~~~D~~Ifid~~~~~~l~ 102 (188)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYDVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLS 102 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBSEEEEECTTTTSSHHHHHHCSEEEEEECCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCHHHHHHCCEEEEEECCHHHHHH
T ss_conf 99998898977889999999999663555556654048724311263378611001450342001258999688899999
Q ss_pred H
Q ss_conf 8
Q gi|254780826|r 279 S 279 (509)
Q Consensus 279 ~ 279 (509)
+
T Consensus 103 R 103 (188)
T 1uj2_A 103 R 103 (188)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 153
>>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} (C:1-214)
Probab=81.11 E-value=0.6 Score=25.87 Aligned_cols=31 Identities=23% Similarity=0.461 Sum_probs=21.3
Q ss_pred EEEEECCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 799312453477787027998335431112224
Q gi|254780826|r 204 IMPMHCSINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 204 ~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
.+-=+.|..+. .| +...++|.||.|||||--
T Consensus 19 ~~l~~is~~i~-~G-e~~~iiG~nGsGKSTLlk 49 (214)
T 2nq2_C 19 FLFQQLNFDLN-KG-DILAVLGQNGCGKSTLLD 49 (214)
T ss_dssp EEEEEEEEEEE-TT-CEEEEECCSSSSHHHHHH
T ss_pred EEEEEEEEEEC-CC-CEEEEECCCCCCHHHHHH
T ss_conf 79850477887-99-899998589998999999
No 154
>>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:706-942,A:1014-1054)
Probab=81.00 E-value=0.52 Score=26.26 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=17.5
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+.++.++|.+|||||||...
T Consensus 27 G~iteI~G~pGsGKTtl~l~ 46 (278)
T 3cmu_A 27 GRIVEIYGPESSGKTTLTLQ 46 (278)
T ss_dssp TSEEEEECCTTSSHHHHHHH
T ss_pred CCEEEECCCCCCCCHHHHHH
T ss_conf 52588507887770366898
No 155
>>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* (A:)
Probab=80.97 E-value=0.63 Score=25.70 Aligned_cols=56 Identities=16% Similarity=0.181 Sum_probs=32.8
Q ss_pred HHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHH--HHHHHCCEEEEE
Q ss_conf 44185889999974232456662000125653121001050015683153899999--998819809998
Q gi|254780826|r 349 AYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKD--YIVKYCVDCWLV 416 (509)
Q Consensus 349 sklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~--~i~~~~~~vyLv 416 (509)
..||-.|-.-..+ .-.-+.+|.-.+- -+|+--+.|..-++++.- .+++.++.|-+|
T Consensus 158 ~~LSGGq~QRvaI---------ARAL~~~P~llll---DEPt~~LD~~~~~~i~~ll~~l~~~G~tiiiv 215 (263)
T 2olj_A 158 DSLSGGQAQRVAI---------ARALAMEPKIMLF---DEPTSALDPEMVGEVLSVMKQLANEGMTMVVV 215 (263)
T ss_dssp GGSCHHHHHHHHH---------HHHHTTCCSEEEE---ESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCHHHHHHHHH---------HHHHHCCCCEEEE---CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 0005678899999---------8888449976870---68875369778766899998524688669999
No 156
>>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 2zzy_A (A:)
Probab=80.87 E-value=0.52 Score=26.24 Aligned_cols=18 Identities=44% Similarity=0.519 Sum_probs=15.3
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
....+.|.||.|||||..
T Consensus 2 ~~i~lvGpsGsGKsTL~~ 19 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLK 19 (186)
T ss_dssp CCEEEESSSSSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
T ss_conf 769998999999899999
No 157
>>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, membrane, nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A (A:1-183,A:302-322)
Probab=80.80 E-value=0.56 Score=26.07 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 88778999999862410787993124534777870279983354311122247
Q gi|254780826|r 185 GEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 185 GEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d 237 (509)
.++|+-+..+....+...... ..+.......||.|..|||||++...
T Consensus 24 ~~~k~~l~~~i~~~~~~~~~~------~~~~~~~~giLl~GPpGtGKT~laka 70 (204)
T 3eie_A 24 EGAKEALKEAVILPVKFPHLF------KGNRKPTSGILLYGPPGTGKSYLAKA 70 (204)
T ss_dssp HHHHHHHHHHTHHHHHCGGGC------CTTCCCCCEEEEECSSSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHH------HCCCCCCCCEEEECCCCCCHHHHHHH
T ss_conf 999999999999686499988------27999998058879999980289898
No 158
>>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, structural genomics, PSI-2; 2.35A {Corynebacterium glutamicum atcc 13032} (A:1-194)
Probab=80.75 E-value=0.59 Score=25.90 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=18.7
Q ss_pred EEEEEEECCCCCCCCCCCCCCCEEE
Q ss_conf 0279983354311122247886133
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSASVDRFLI 243 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d~~r~Li 243 (509)
.+.+|.|.+|||||.|...-.+.|.
T Consensus 23 ~~~l~~Gp~GtGKT~lA~~la~~l~ 47 (194)
T 3b85_A 23 TIVFGLGPAGSGKTYLAXAKAVQAL 47 (194)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8489988999739999999999876
No 159
>>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:1056-1292,A:1363-1404)
Probab=80.72 E-value=0.71 Score=25.35 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=17.4
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+.+..++|.+|+|||||...
T Consensus 27 G~iteI~G~pgsGKTtlal~ 46 (279)
T 3cmw_A 27 GRIVEIYGPESSGKTTLTLQ 46 (279)
T ss_dssp TSEEEEECSTTSSHHHHHHH
T ss_pred CEEEEEECCCCCCCHHHHHH
T ss_conf 33899878887780459999
No 160
>>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} (A:24-137,A:224-347,A:402-437)
Probab=80.60 E-value=1.7 Score=22.82 Aligned_cols=54 Identities=4% Similarity=-0.259 Sum_probs=28.5
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 10500156831538999999988198099981674688768873207889999999998496
Q gi|254780826|r 386 FGAPFMPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNS 447 (509)
Q Consensus 386 Fg~PF~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~ 447 (509)
|-+-|--+.+...-+-+....+++++.++++--.- ..+.-.+.+..-++|+.+.
T Consensus 175 ~iDE~~~~~~~~~~~~~~~~~R~~g~~~~~~~Qs~--------~ql~~~~g~~~~~~il~n~ 228 (274)
T 1e9r_A 175 FIDELASLEKLASLADALTKGRKAGLRVVAGLQST--------SQLDDVYGVKEAQTLRASF 228 (274)
T ss_dssp EESCGGGSCBCSSHHHHHHHCTTTTEEEEEEESCH--------HHHHHHHCHHHHHHHHTTC
T ss_pred EHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEECCH--------HHHHHHHCHHHHHHHHHHC
T ss_conf 61265541451658899997366896799996359--------9999876788999999857
No 161
>>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} (A:1-160)
Probab=80.53 E-value=0.53 Score=26.22 Aligned_cols=19 Identities=42% Similarity=0.546 Sum_probs=16.6
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
...||.|..||||||+..-
T Consensus 39 ~~~Ll~GppGtGKT~~a~~ 57 (160)
T 2chg_A 39 PHLLFSGPPGTGKTATAIA 57 (160)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 8599888999867789998
No 162
>>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* (A:)
Probab=80.50 E-value=0.55 Score=26.08 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=17.7
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+.+.+++|.+|+|||+|...
T Consensus 20 G~~~~I~G~pGsGKT~l~~q 39 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHH
T ss_pred CEEEEEEECCCCCHHHHHHH
T ss_conf 86999991899989999999
No 163
>>2yz2_A Putative ABC transporter ATP-binding protein TM_0222; cobalt transport, hydrolase, inner membrane, membrane, nucleotide- binding; 2.30A {Thermotoga maritima MSB8} (A:)
Probab=80.29 E-value=0.69 Score=25.46 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=17.3
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
.+++..+.|.||.|||||-.-
T Consensus 32 ~Ge~~~liG~nGaGKSTLlk~ 52 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQI 52 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
T ss_conf 998999999999869999999
No 164
>>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural genomics, joint center for structural genomics, JCSG; 2.10A {Thermotoga maritima MSB8} (A:1-98,A:164-256)
Probab=80.29 E-value=0.69 Score=25.46 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=16.7
Q ss_pred CCEEEEEEECCCCCCCCCCC
Q ss_conf 87027998335431112224
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~ 236 (509)
.+....+.|.||.|||||--
T Consensus 40 ~Ge~~~ivG~nGaGKSTll~ 59 (191)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLR 59 (191)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
T ss_conf 99799999999985999999
No 165
>>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A (A:1-160)
Probab=80.29 E-value=0.53 Score=26.22 Aligned_cols=19 Identities=42% Similarity=0.546 Sum_probs=16.6
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
...||.|..||||||+..-
T Consensus 39 ~~~Ll~GppGtGKT~~a~~ 57 (160)
T 2chq_A 39 PHLLFSGPPGTGKTATAIA 57 (160)
T ss_dssp CCEEEESSSSSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 7799889799999999999
No 166
>>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, endosome, nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* (X:1-216,X:335-355)
Probab=80.25 E-value=0.55 Score=26.11 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 88778999999862410787993124534777870279983354311122247
Q gi|254780826|r 185 GEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 185 GEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d 237 (509)
.++|+.+..+.-..+...... ..+.......||+|..|||||+|...
T Consensus 57 ~~~k~~l~~~i~~~~~~~~~~------~~~~~~~~giLl~GPPGtGKT~laka 103 (237)
T 2qp9_X 57 EGAKEALKEAVILPVKFPHLF------KGNRKPTSGILLYGPPGTGKSYLAKA 103 (237)
T ss_dssp GGHHHHHHHHTHHHHHCGGGG------CSSCCCCCCEEEECSTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHH------HCCCCCCCCCEEECCCCCCCCHHHHH
T ss_conf 999999999999576595867------46898888654468999986447787
No 167
>>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:1-244,A:315-356)
Probab=79.97 E-value=0.63 Score=25.70 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=17.2
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+.++.++|.+|||||||...
T Consensus 34 G~IteI~G~pGsGKTtl~lq 53 (286)
T 3cmu_A 34 GRIVEIYGPESSGKTTLTLQ 53 (286)
T ss_dssp TSEEEEECCTTSSHHHHHHH
T ss_pred CEEEEEECCCCCCCCEEEEH
T ss_conf 30699866776785047613
No 168
>>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} (A:)
Probab=79.88 E-value=0.72 Score=25.32 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=32.2
Q ss_pred HCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHH--HHHHHHHCCEEEEE
Q ss_conf 41858899999742324566620001256531210010500156831538999--99998819809998
Q gi|254780826|r 350 YLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNIL--KDYIVKYCVDCWLV 416 (509)
Q Consensus 350 klt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll--~~~i~~~~~~vyLv 416 (509)
.||-.|..-.-+ .-.-+.+|.-.+- -+|+--+.|..-.+++ -..+++.+..+-+|
T Consensus 153 ~LSGGq~QRv~I---------AraL~~~P~illl---DEPts~LD~~~~~~i~~ll~~l~~~G~tvi~v 209 (262)
T 1b0u_A 153 HLSGGQQQRVSI---------ARALAMEPDVLLF---DEPTSALDPELVGEVLRIMQQLAEEGKTMVVV 209 (262)
T ss_dssp GSCHHHHHHHHH---------HHHHHTCCSEEEE---ESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCHHHHHHHHH---------HHHHHCCCCEEEE---CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 578788799999---------9999637872786---14445689778888988766666439705999
No 169
>>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* (A:)
Probab=79.67 E-value=0.8 Score=25.01 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=16.7
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
++...+.|.||+|||||---
T Consensus 64 Ge~v~iiG~nGsGKSTLlk~ 83 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMM 83 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
T ss_conf 98999999998709999999
No 170
>>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein LOLD; structural genomics, NPPSFA; 1.70A {Aquifex aeolicus VF5} PDB: 2pcl_A (A:)
Probab=79.63 E-value=0.73 Score=25.29 Aligned_cols=57 Identities=12% Similarity=0.018 Sum_probs=31.5
Q ss_pred HHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHH--HHHHHHCCEEEEEE
Q ss_conf 4418588999997423245666200012565312100105001568315389999--99988198099981
Q gi|254780826|r 349 AYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILK--DYIVKYCVDCWLVN 417 (509)
Q Consensus 349 sklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~--~~i~~~~~~vyLvN 417 (509)
..||-.|-.---+ ...=+.+|.-.+- =+|.--+.|.--.+++. .++.+.+..+-+|-
T Consensus 139 ~~LSGGqkQRvai---------AraL~~~P~illl---DEPTs~LD~~~~~~v~~~l~~l~~~g~tii~vt 197 (224)
T 2pcj_A 139 YELSGGEQQRVAI---------ARALANEPILLFA---DEPTGNLDSANTKRVMDIFLKINEGGTSIVMVT 197 (224)
T ss_dssp GGSCHHHHHHHHH---------HHHTTTCCSEEEE---ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHCCHHHHHHHHH---------HHHHHCCCCEEEE---CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 0078888779998---------8756237875764---588779999999999999999996299899995
No 171
>>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} (A:1-210)
Probab=79.57 E-value=0.64 Score=25.68 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 88778999999862410787993124534777870279983354311122247
Q gi|254780826|r 185 GEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 185 GEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d 237 (509)
.++|+-+-.++.+++...-+ ...+-.--...||+|.+|||||+|...
T Consensus 46 ~~~k~~i~~~~~~~~~~~~~------~~~~~~~~~giLL~GppGtGKT~la~a 92 (210)
T 1iy2_A 46 EEAKEELKEIVEFLKNPSRF------HEMGARIPKGVLLVGPPGVGKTHLARA 92 (210)
T ss_dssp HHHHHHHHHHHHHHHCHHHH------HHTTCCCCCEEEEECCTTSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHH------HHCCCCCCCCEEEECCCCCCCHHHHHH
T ss_conf 99999999999984499999------866999998037757999983389999
No 172
>>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} (A:1-44,A:95-171)
Probab=79.55 E-value=0.52 Score=26.28 Aligned_cols=37 Identities=5% Similarity=-0.088 Sum_probs=22.2
Q ss_pred CCCCEEEEEECCCCCCCCHHHHCCHHHHHHHHHHHCC
Q ss_conf 8872699960267788760444185889999974232
Q gi|254780826|r 329 KHPKHVIMLAADAFGVLPPVAYLNPEKAVYYFLSGYT 365 (509)
Q Consensus 329 ~~p~~iifl~~d~~gvlPpvsklt~~qa~~~F~sGyT 365 (509)
....+++.+.+|..---.|+-.++..++..-|+..+-
T Consensus 74 l~~~~viAvvtd~~~~~~p~f~ldd~~~ia~fI~~~~ 110 (121)
T 2f1r_A 74 FRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLL 110 (121)
T ss_dssp GCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 4699889972787778898578064999999999999
No 173
>>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA ATG; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* (A:183-574)
Probab=79.55 E-value=0.62 Score=25.76 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=15.7
Q ss_pred CEEEEEEECCCCCCCCCC
Q ss_conf 702799833543111222
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS 235 (509)
+....+.|.||.|||||.
T Consensus 32 Ge~~~lvG~SGsGKSTll 49 (392)
T 2iut_A 32 MPHLLVAGTTGSGKSVGV 49 (392)
T ss_dssp SCCEEEECCTTSSHHHHH
T ss_pred CCEEEEEECCCCCHHHHH
T ss_conf 040799946887478999
No 174
>>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein-protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} (A:96-293)
Probab=79.55 E-value=0.68 Score=25.50 Aligned_cols=21 Identities=48% Similarity=0.634 Sum_probs=17.6
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
++.+..+.|.+|.|||||..-
T Consensus 6 ~g~ii~l~G~nG~GKTTl~~~ 26 (198)
T 1rj9_A 6 KGRVVLVVGVNGVGKTTTIAK 26 (198)
T ss_dssp SSSEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCCCHHHHH
T ss_conf 876999524667774118999
No 175
>>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} (A:347-572)
Probab=79.53 E-value=0.72 Score=25.34 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=16.6
Q ss_pred CCCEEEEEEECCCCCCCCCCC
Q ss_conf 787027998335431112224
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~ 236 (509)
.| +...+.|.||.|||||-.
T Consensus 35 ~G-e~v~iiG~NGaGKSTllk 54 (226)
T 3bk7_A 35 KG-EVIGIVGPNGIGKTTFVK 54 (226)
T ss_dssp TT-CEEEEECCTTSSHHHHHH
T ss_pred CC-CEEEEECCCCCCCCCHHH
T ss_conf 78-489997787765550435
No 176
>>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} (A:)
Probab=79.49 E-value=0.6 Score=25.83 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=15.4
Q ss_pred EEEEEECCCCCCCCCCCC
Q ss_conf 279983354311122247
Q gi|254780826|r 220 VALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d 237 (509)
+..+-|.||+|||||+..
T Consensus 4 iI~I~G~~GsGKTTla~~ 21 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANL 21 (206)
T ss_dssp EEEEECSTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
T ss_conf 999889887779999999
No 177
>>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:1055-1291,A:1361-1404)
Probab=79.48 E-value=0.63 Score=25.73 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=17.4
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+.++.++|.+|||||||...
T Consensus 27 G~ItEI~G~pGsGKTtLaL~ 46 (281)
T 3cmu_A 27 GRIVEIYGPESSGKTTLTLQ 46 (281)
T ss_dssp TSEEEEECCTTSSHHHHHHH
T ss_pred CEEEEEECCCCCCCEEEEEE
T ss_conf 00464333677884788641
No 178
>>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) class, TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima MSB8} (A:1-225)
Probab=79.44 E-value=0.76 Score=25.16 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=35.0
Q ss_pred HHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHH---HHHHHHHHCCEEEEEEC
Q ss_conf 44185889999974232456662000125653121001050015683153899---99999881980999816
Q gi|254780826|r 349 AYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNI---LKDYIVKYCVDCWLVNT 418 (509)
Q Consensus 349 sklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~l---l~~~i~~~~~~vyLvNT 418 (509)
+.||-.|.+---+ ...=+.+|.-.+ +-+||--+.|.....+ +.+..++.+..+-+|--
T Consensus 132 ~~LSGG~kQRv~i---------AraL~~~P~lll---lDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtH 192 (225)
T 2yyz_A 132 TQLSGGQQQRVAL---------ARALVKQPKVLL---FDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTH 192 (225)
T ss_dssp GGSCHHHHHHHHH---------HHHHTTCCSEEE---EESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEES
T ss_pred CCCCHHHHCHHHH---------HHHHCCCCCEEE---ECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 1089478453334---------321135887134---414455547234455677887888861954899968
No 179
>>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ protein, ATP-binding, DNA-binding; 4.35A {Sulfolobus solfataricus} (A:328-477)
Probab=79.36 E-value=0.66 Score=25.56 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=14.8
Q ss_pred EEEEECCCCCCCCCCCC
Q ss_conf 79983354311122247
Q gi|254780826|r 221 ALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 221 alfFGLSGTGKTTLS~d 237 (509)
.|+.|-.|||||+|...
T Consensus 3 vLl~GppGtGKT~lA~~ 19 (150)
T 3f9v_A 3 ILIIGDPGTAKSQMLQF 19 (150)
T ss_dssp EEEEESSCCTHHHHHHS
T ss_pred EEEECCCCCCHHHHHHH
T ss_conf 66526875308899999
No 180
>>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* (A:1-111,A:185-343)
Probab=79.33 E-value=0.67 Score=25.53 Aligned_cols=51 Identities=16% Similarity=0.061 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHHHH-----CCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 8315389999999881-----980999816746887688732078899999999984960
Q gi|254780826|r 394 DPVQYGNILKDYIVKY-----CVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSI 448 (509)
Q Consensus 394 ~p~~ya~ll~~~i~~~-----~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l 448 (509)
+--+||..=..++++. +.+++.++.....- =..--++-...++++.++|.-
T Consensus 203 ~Tr~yAKrQ~tWfr~~~~~~~~~~i~~ld~~~~~~----~~~~v~~~~~~~~~~fl~~~~ 258 (270)
T 3eph_A 203 RTRQYAKRQVKWIKKMLIPDIKGDIYLLDATDLSQ----WDTNASQRAIAISNDFISNRP 258 (270)
T ss_dssp HHHHHHHHHHHHHHHTHHHHTTTCEEEEECSCTTT----CTTTTHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH----HHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999986434311489743047416778----777878889999999974898
No 181
>>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} (A:1-73,A:153-290)
Probab=79.33 E-value=0.56 Score=26.05 Aligned_cols=44 Identities=25% Similarity=0.258 Sum_probs=27.4
Q ss_pred EEEEEEECCCCCCCCCCCCCCCEEEE-----CCCEEEC-CCC--CCCCCCCC
Q ss_conf 02799833543111222478861330-----3110215-674--12345553
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSASVDRFLIG-----DDEHGWS-KEG--VFNFEGGC 262 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d~~r~Lig-----DDehgW~-d~g--vfn~EgGc 262 (509)
-+..+-|+-|+||||+++-=.+.|-- =-...-| |+. |+-|||=|
T Consensus 32 ~vigi~G~QGsGKTT~~~~L~~~L~~~~~~~lkv~~~SiDDfvDvvilEGW~ 83 (211)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFVDIFILEGWF 83 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGCSEEEEEESS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEECCC
T ss_conf 8998378987889999999999999750788707995334578789982200
No 182
>>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* (A:136-512)
Probab=79.26 E-value=0.64 Score=25.65 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=17.6
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 45347778702799833543111222
Q gi|254780826|r 210 SINMDKEKEDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 210 san~~~~~~d~alfFGLSGTGKTTLS 235 (509)
|.++. .| ....+.|.||+|||||-
T Consensus 26 sl~i~-~G-e~~~ivG~SGsGKSTll 49 (377)
T 2ius_A 26 VADLA-KM-PHLLVAGTTGSGASVGV 49 (377)
T ss_dssp EEEGG-GS-CSEEEECCTTSSHHHHH
T ss_pred EEEHH-HH-CCEEEECCCCCCHHHHH
T ss_conf 74465-40-63578556674288999
No 183
>>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} (A:37-273)
Probab=79.09 E-value=0.66 Score=25.60 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=17.7
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+.+.+++|-+|||||+|+..
T Consensus 27 Gsi~li~G~pGsGKT~l~~q 46 (237)
T 1u94_A 27 GRIVEIYGPESSGKTTLTLQ 46 (237)
T ss_dssp TSEEEEECSTTSSHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
T ss_conf 80899988876778999999
No 184
>>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:1405-1641)
Probab=79.09 E-value=0.66 Score=25.60 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=17.7
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+.+.+++|-+|||||+|+..
T Consensus 27 Gsi~li~G~pGsGKT~l~~q 46 (237)
T 3cmw_A 27 GRIVEIYGPESSGKTTLTLQ 46 (237)
T ss_dssp TSEEEEECSTTSSHHHHHHH
T ss_pred EEEEEEECCCCCCCEEEEHH
T ss_conf 20023314788773777587
No 185
>>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:1749-1985)
Probab=79.08 E-value=0.66 Score=25.60 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=17.6
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+.+.+++|-+|||||+|+..
T Consensus 27 Gsi~li~G~pGsGKT~l~~q 46 (237)
T 3cmu_A 27 GRIVEIYGPESSGKTTLTLQ 46 (237)
T ss_dssp TSEEEEECCTTSSHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEE
T ss_conf 42123457876666730101
No 186
>>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} (A:1-92,A:171-257)
Probab=79.04 E-value=0.7 Score=25.41 Aligned_cols=20 Identities=50% Similarity=0.768 Sum_probs=16.8
Q ss_pred CCEEEEEEECCCCCCCCCCC
Q ss_conf 87027998335431112224
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~ 236 (509)
.+.+..+.|.+|.|||||--
T Consensus 32 ~Ge~~~liG~nGaGKSTll~ 51 (179)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLIN 51 (179)
T ss_dssp TTCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
T ss_conf 99799998689999999999
No 187
>>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} (A:1-276)
Probab=78.79 E-value=0.8 Score=25.01 Aligned_cols=96 Identities=16% Similarity=0.058 Sum_probs=49.0
Q ss_pred HHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHH--HHHHHCC-------------
Q ss_conf 0444185889999974232456662000125653121001050015683153899999--9988198-------------
Q gi|254780826|r 347 PVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKD--YIVKYCV------------- 411 (509)
Q Consensus 347 pvsklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~--~i~~~~~------------- 411 (509)
++..||..|..---+.-- -+.+|.-.+ +=+|.--+.|....+++.- .+.+.+.
T Consensus 155 ~~~~LSGGqkQRv~iA~a---------l~~~p~iLi---LDEPtsgLD~~~~~~i~~~l~~L~~~g~tIiiisHdl~~~~ 222 (276)
T 1yqt_A 155 EIQHLSGGELQRVAIAAA---------LLRNATFYF---FDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLD 222 (276)
T ss_dssp BGGGCCHHHHHHHHHHHH---------HHSCCSEEE---EESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred CHHHCCHHHHHHHHHHHH---------HHCCCCEEE---ECCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHH
T ss_conf 676657777678887777---------624653221---00312368999999999998876542010542120189898
Q ss_pred ----EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCC
Q ss_conf ----09998167468876887320788999999999849602466066788
Q gi|254780826|r 412 ----DCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDEN 458 (509)
Q Consensus 412 ----~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~~~~~~~~~~ 458 (509)
.+|+++-. .|.+ |-.-..+.+|..+...+.|.+.+......|.
T Consensus 223 ~l~d~i~v~~g~--~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 269 (276)
T 1yqt_A 223 YLSDIIHVVYGE--PGVY--GIFSQPKGTRNGINEFLRGYLKDENVRFRPY 269 (276)
T ss_dssp HHCSEEEEEEEE--TTTE--EEECCCEEHHHHHHHHHHTEETTTTEECSSS
T ss_pred HHCCEEEEECCC--CCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 635899990466--8742--3211306679999999998666665543334
No 188
>>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} (A:1-115,A:163-216)
Probab=78.78 E-value=0.61 Score=25.82 Aligned_cols=17 Identities=35% Similarity=0.661 Sum_probs=14.6
Q ss_pred EEEEECCCCCCCCCCCC
Q ss_conf 79983354311122247
Q gi|254780826|r 221 ALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 221 alfFGLSGTGKTTLS~d 237 (509)
.++.|++|+||||++..
T Consensus 3 I~i~G~pGsGKSTlak~ 19 (169)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQ 19 (169)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
T ss_conf 99989999987999999
No 189
>>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} (A:1-224)
Probab=78.74 E-value=0.7 Score=25.43 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=18.7
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 453477787027998335431112224
Q gi|254780826|r 210 SINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 210 san~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
|-.+. .| .+..+.|.||.|||||-.
T Consensus 20 sl~i~-~G-e~~~iiG~sGsGKSTLl~ 44 (224)
T 3d31_A 20 SLKVE-SG-EYFVILGPTGAGKTLFLE 44 (224)
T ss_dssp EEEEC-TT-CEEEEECCCTHHHHHHHH
T ss_pred EEEEC-CC-CEEEEECCCCCHHHHHHH
T ss_conf 88999-99-899999999983999999
No 190
>>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} (A:)
Probab=78.72 E-value=0.71 Score=25.36 Aligned_cols=19 Identities=21% Similarity=0.109 Sum_probs=15.9
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-+..+.|.+|+||||++..
T Consensus 3 ~iI~i~G~~GsGKsT~a~~ 21 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKL 21 (241)
T ss_dssp EEEEEEECTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 0899989998869999999
No 191
>>2faf_A Phosphoenolpyruvate carboxykinase; pepck, phosphoryl transfer, lyase; HET: 20S EPE 1PE; 1.70A {Gallus gallus} PDB: 2fah_A* 2qzy_A* (A:227-314,A:406-608)
Probab=78.63 E-value=4.5 Score=20.02 Aligned_cols=160 Identities=14% Similarity=0.074 Sum_probs=86.5
Q ss_pred CCEEEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHC-CCCCCCCHHHHHHHHHHH---H
Q ss_conf 726999602677887604441858899999742324566620001256531210010-500156831538999999---9
Q gi|254780826|r 331 PKHVIMLAADAFGVLPPVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFG-APFMPRDPVQYGNILKDY---I 406 (509)
Q Consensus 331 p~~iifl~~d~~gvlPpvsklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg-~PF~~~~p~~ya~ll~~~---i 406 (509)
.+.|||=-+|+. .+|+|..-..=+-..+..+.-.|+.+.+..|... .+..-+|+ -||+.+|...|-+--.+- +
T Consensus 97 i~aiiFGGRr~~-t~PlV~ea~~W~hGV~~gatm~SE~TAAa~g~~g--~~r~dP~AMlPF~gY~~gdY~~HwL~~g~~~ 173 (291)
T 2faf_A 97 IDAIIFGGRRPR-GVPLVVEAFGWRHGVFMGSAMRSEATAAAEHKGG--RLMHDPFAMRPFFGYNAGRYLEHWLSTGLRS 173 (291)
T ss_dssp EEEEEEEECCSS-SSCSEEECSSHHHHHHHHHTCBC--------------CCBCGGGCGGGCSSCHHHHHHHHHHHTTST
T ss_pred EEEEEECCCCCC-CCCEEEEECCCCCCEEEEEEHHHHHHHHHHCCCC--CEECCCHHHCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 888997675688-8870698405767679620012056677633667--3441823316556779899999998775005
Q ss_pred HHHCCEEEEEE---CCCCCCCCCCCCCCC--HHHHHHHHHHHHCCCCCCCCEEECCCCCCCCC----CCCCCCCHHHCCH
Q ss_conf 88198099981---674688768873207--88999999999849602466066788774256----2079899656497
Q gi|254780826|r 407 VKYCVDCWLVN---TGWTAGSYGEGYRMP--LSVTRALLKAIFDNSIKSVPYRVDENFGFSVP----LEVKGVDRKLLNP 477 (509)
Q Consensus 407 ~~~~~~vyLvN---TGw~Gg~~g~G~Ri~--l~~Tr~ii~ai~~g~l~~~~~~~~~~f~l~iP----~~~~gv~~~~l~P 477 (509)
...-.++|-|| .+-.| +-+= ......+++-|.+-.=..++...-|+ |+ || ....|++.+-+..
T Consensus 174 ~~k~PkIF~VNwFrkd~~G------kFLWPGfgeN~RvL~WI~~R~~G~~~a~eTPi-G~-iP~~~dLd~~Gl~~~~~~~ 245 (291)
T 2faf_A 174 NARLPRLFHVNWFLRDNEG------RFVWPGFGHNARVLAWIFGRIQGRDTARPTPI-GW-VPKEGDLDLGGLPGVDYSQ 245 (291)
T ss_dssp TCBCCEEEEEESCCBCTTS------SBSSCCGGGHHHHHHHHHHHHTTCSCEEEETT-EE-EECTTSSCCTTCTTCCHHH
T ss_pred CCCCCCEEEEECEEECCCC------CCCCCCCCCCHHHHHHHHHHHCCCCCCEECCC-CC-CCCHHHCCCCCCCHHHHHH
T ss_conf 6899978996023467998------87478865215999999998639756010776-23-5782004766898778998
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 6625998999999999999999999
Q gi|254780826|r 478 RDSWNDVEAYDQKMRELLLMFENNA 502 (509)
Q Consensus 478 ~~~w~d~~~Y~~~a~~L~~~F~~Nf 502 (509)
.-+ -|+++|.+++....+-|.+.|
T Consensus 246 l~~-vd~~~w~~E~~~i~~~f~~q~ 269 (291)
T 2faf_A 246 LFP-MEKGFWEEECRQLREYYGENF 269 (291)
T ss_dssp HSC-CCHHHHHHHHHHHHHHHHHHT
T ss_pred HHC-CCHHHHHHHHHHHHHHHHHHH
T ss_conf 839-599999999999999998762
No 192
>>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} (A:)
Probab=78.49 E-value=0.8 Score=25.02 Aligned_cols=57 Identities=23% Similarity=0.246 Sum_probs=29.5
Q ss_pred HHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 0444185889999974232456662000125653121001050015683153899999998819809998
Q gi|254780826|r 347 PVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLV 416 (509)
Q Consensus 347 pvsklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~~i~~~~~~vyLv 416 (509)
++..||..|-.---+. -.=+.+|.-.+-- +||--+.|... +.+.+.|++++.++-+|
T Consensus 125 ~~~~LSgGqkqrv~ia---------~aL~~~p~illLD---EPt~~LD~~~~-~~l~~~l~~~~~~~iiv 181 (263)
T 2pjz_A 125 KLYKLSAGQSVLVRTS---------LALASQPEIVGLD---EPFENVDAARR-HVISRYIKEYGKEGILV 181 (263)
T ss_dssp BGGGSCHHHHHHHHHH---------HHHHTCCSEEEEE---CTTTTCCHHHH-HHHHHHHHHSCSEEEEE
T ss_pred CCCCCCHHHHHHHHHH---------HHHHHCCCEEEEC---CCCCCCCHHHH-HHHHHHHHHHCCCEEEE
T ss_conf 8231898899999999---------9986299899945---87410199999-99999999809929999
No 193
>>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} (A:1-119,A:196-206,A:289-340)
Probab=78.48 E-value=0.79 Score=25.05 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=17.6
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
...+.+..|.||+|||||+..
T Consensus 6 k~~IIVI~GPTGSGKStLa~~ 26 (182)
T 3d3q_A 6 KPFLIVIVGPTASGKTELSIE 26 (182)
T ss_dssp CCEEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
T ss_conf 895699989772169999999
No 194
>>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} (A:1-249)
Probab=78.45 E-value=0.75 Score=25.22 Aligned_cols=52 Identities=13% Similarity=0.175 Sum_probs=29.0
Q ss_pred HHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHH--HHHHHHHC
Q ss_conf 04441858899999742324566620001256531210010500156831538999--99998819
Q gi|254780826|r 347 PVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNIL--KDYIVKYC 410 (509)
Q Consensus 347 pvsklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll--~~~i~~~~ 410 (509)
++..||..|..--.+. -.-+.+|+-.+ +=+|+--+.|..-.+++ .+.+.+.+
T Consensus 158 ~~~~LSgGq~qrv~iA---------raL~~~P~lLi---LDEPt~gLD~~~~~~i~~ll~~l~~~~ 211 (249)
T 2ihy_A 158 YIGYLSTGEKQRVXIA---------RALXGQPQVLI---LDEPAAGLDFIARESLLSILDSLSDSY 211 (249)
T ss_dssp BGGGSCHHHHHHHHHH---------HHHHTCCSEEE---EESTTTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHH---------HHHHHCCCEEE---ECCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 8220798792349999---------99972998899---638765499999999999999999848
No 195
>>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} (A:1-34,A:119-219)
Probab=78.42 E-value=0.67 Score=25.52 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=16.0
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-...+.|.||.||||++.-
T Consensus 4 ~~i~~~G~~g~GKst~~~~ 22 (135)
T 2h92_A 4 INIALDGPAAAGKSTIAKR 22 (135)
T ss_dssp CCEEEECCTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 4999778986788999999
No 196
>>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} (A:23-279)
Probab=78.40 E-value=0.82 Score=24.95 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=17.8
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+.+.+++|.+|+|||||...
T Consensus 8 G~v~~i~G~~G~GKT~l~l~ 27 (257)
T 1nlf_A 8 GTVGALVSPGGAGKSMLALQ 27 (257)
T ss_dssp TSEEEEEESTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHH
T ss_conf 97899991999989999999
No 197
>>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:361-593,A:665-705)
Probab=78.32 E-value=0.71 Score=25.35 Aligned_cols=25 Identities=12% Similarity=-0.129 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHCCEEEEEECC
Q ss_conf 3153899999998819809998167
Q gi|254780826|r 395 PVQYGNILKDYIVKYCVDCWLVNTG 419 (509)
Q Consensus 395 p~~ya~ll~~~i~~~~~~vyLvNTG 419 (509)
.......|....+++++-+.++|--
T Consensus 135 l~~~~~~L~~la~~~~~~vi~iNq~ 159 (274)
T 3cmw_A 135 MSQAMRKLAGNLKQSNTLLIFINQI 159 (274)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEECE
T ss_pred HHHHHHHHHHHHHHCCCEEEEHHHH
T ss_conf 3788999987776348679983230
No 198
>>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} (A:1-230)
Probab=78.27 E-value=0.75 Score=25.22 Aligned_cols=59 Identities=14% Similarity=0.209 Sum_probs=34.3
Q ss_pred HHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHH---HHHHHHHCCEEEEEE
Q ss_conf 04441858899999742324566620001256531210010500156831538999---999988198099981
Q gi|254780826|r 347 PVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNIL---KDYIVKYCVDCWLVN 417 (509)
Q Consensus 347 pvsklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll---~~~i~~~~~~vyLvN 417 (509)
++..||-.|-.---+. -.=+.+|.-.+ +-+|+--+.|..-.+++ .+..+++|..+-++-
T Consensus 140 ~~~~LSgGqkQrv~iA---------~aL~~~P~ill---lDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvl~vs 201 (230)
T 3gfo_A 140 PTHCLSFGQKKRVAIA---------GVLVMEPKVLI---LDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIAT 201 (230)
T ss_dssp BGGGSCHHHHHHHHHH---------HHHTTCCSEEE---EECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred CCCCCCHHHHHHHHHH---------HHHHCCCCEEE---ECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 8010798998899998---------97634998998---43875578988999999999999873698899991
No 199
>>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} (A:)
Probab=78.22 E-value=0.7 Score=25.41 Aligned_cols=19 Identities=37% Similarity=0.483 Sum_probs=16.3
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+.+..+-|.||.|||||-.
T Consensus 4 Ge~~~ivG~sGsGKsTLl~ 22 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLK 22 (198)
T ss_dssp -CCEEEECCTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 8679999999999999999
No 200
>>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} (A:1-200)
Probab=78.17 E-value=2.5 Score=21.78 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 88877899999986241078799312453477787027998335431112224
Q gi|254780826|r 184 AGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 184 aGEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
..++|+-+-.++.+++...-+ ....+. .....||+|..|||||.+..
T Consensus 36 ~~~~k~~i~~~~~~~~~~~~~----~~~~~~--~~~giLl~GppGtGKT~la~ 82 (200)
T 2dhr_A 36 AEEAKEELKEIVEFLKNPSRF----HEMGAR--IPKGVLLVGPPGVGKTHLAR 82 (200)
T ss_dssp CHHHHHHHHHHHHHHHCGGGT----TTTSCC--CCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHH----HHCCCC--CCCEEEEECCCCCCHHHHHH
T ss_conf 899999999999986699999----975999--99758988989985899999
No 201
>>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} (A:)
Probab=78.02 E-value=0.76 Score=25.18 Aligned_cols=18 Identities=39% Similarity=0.556 Sum_probs=15.5
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
-..+|.|.+|+||||+..
T Consensus 26 g~ili~GptGsGKTTll~ 43 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp EEEEEECSTTCSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
T ss_conf 879998999997999999
No 202
>>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} (A:1-185)
Probab=77.95 E-value=0.76 Score=25.16 Aligned_cols=46 Identities=20% Similarity=0.249 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 8877899999986241078799312453477787027998335431112224
Q gi|254780826|r 185 GEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 185 GEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
.+.|+-+-.+..++.....+- ..... .....|++|.+|||||.|..
T Consensus 22 ~~~k~~l~~~~~~~~~~~~~~----~~~~~--~~~giLl~GppGtGKT~la~ 67 (185)
T 1ixz_A 22 EEAKEELKEIVEFLKNPSRFH----EMGAR--IPKGVLLVGPPGVGKTHLAR 67 (185)
T ss_dssp HHHHHHHHHHHHHHHCHHHHH----HTTCC--CCSEEEEECCTTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHH----HCCCC--CCCEEEEECCCCCCCHHHHH
T ss_conf 999999999999987999999----75999--88736876799877208999
No 203
>>2hyd_A ABC transporter homolog; transport protein; HET: ADP; 3.00A {Staphylococcus aureus} (A:329-424,A:496-578)
Probab=77.80 E-value=0.91 Score=24.64 Aligned_cols=20 Identities=40% Similarity=0.644 Sum_probs=16.8
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+....+-|.||.|||||..-
T Consensus 39 Ge~v~ivG~sGsGKSTl~~l 58 (179)
T 2hyd_A 39 GETVAFVGMSGGGKSTLINL 58 (179)
T ss_dssp TCEEEEECSTTSSHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHH
T ss_conf 98999989999749999999
No 204
>>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} (A:)
Probab=77.65 E-value=0.93 Score=24.60 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=16.7
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+....+.|-||.|||||-.-
T Consensus 31 G~~~~ivG~sGsGKSTLl~~ 50 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSA 50 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
T ss_conf 98999999999999999999
No 205
>>2r44_A Uncharacterized protein; YP_676785.1, putative ATPase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} (A:1-226)
Probab=77.64 E-value=0.59 Score=25.88 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=16.5
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
...|+.|..|||||||...
T Consensus 47 ~~vLL~GppGtGKT~la~~ 65 (226)
T 2r44_A 47 GHILLEGVPGLAKTLSVNT 65 (226)
T ss_dssp CCEEEESCCCHHHHHHHHH
T ss_pred CCEEEECCCCCHHHHHHHH
T ss_conf 9589989998709999999
No 206
>>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A (A:1-200,A:283-322)
Probab=77.57 E-value=0.94 Score=24.57 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=17.1
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
.-+.++.|.||+|||||...
T Consensus 3 ~kiiii~GPSGsGKstLa~~ 22 (240)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVX 22 (240)
T ss_dssp CEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
T ss_conf 76799989872169999999
No 207
>>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding, early protein; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* (A:77-305)
Probab=77.57 E-value=1 Score=24.33 Aligned_cols=142 Identities=11% Similarity=0.042 Sum_probs=60.8
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCEEEECCCE-EECCCCCCCCCCCCCCCCCCCCCCC--CHHHHHHHHHCCHHHCCCEEC
Q ss_conf 7027998335431112224788613303110-2156741234555321101358333--513588753011031240057
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSASVDRFLIGDDEH-GWSKEGVFNFEGGCYAKSINLSKET--EPEIFSASCRFGTVLENVVVD 294 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d~~r~LigDDeh-gW~d~gvfn~EgGcYaK~i~Ls~~~--EP~I~~aa~~~~ailENV~~d 294 (509)
....+|.|..||||||+..-=.+ ++|.... ..+.+.-|.+. .+.-|.+-+..|. .+.+... ..+-.+..+-.+.
T Consensus 50 ~~~~il~Gp~gtGKst~~~~i~~-~~~~~~~~~~~~~~~~~~~-~l~~k~~~~~~e~~~~~~~~~~-~~lk~l~~~d~~~ 126 (229)
T 2v9p_A 50 KNCLAFIGPPNTGKSMLCNSLIH-FLGGSVLSFANHKSHFWLA-SLADTRAALVDDATHACWRYFD-TYLRNALDGYPVS 126 (229)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH-HHTCEEECGGGTTSGGGGG-GGTTCSCEEEEEECHHHHHHHH-HTTTGGGGTCCEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-HHCCCEEECCCCCCCCCCC-CCCCCEEEEEECCCCCHHHHHH-HHHHHCCCCCEEE
T ss_conf 41899987999888999999999-8388757227899974456-4117889998457740056799-9999713897477
Q ss_pred CCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC--CCCCCCHHHHCCHHHHHHHHHHHC
Q ss_conf 8981111478867670589860004310002567887269996026--778876044418588999997423
Q gi|254780826|r 295 ECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAAD--AFGVLPPVAYLNPEKAVYYFLSGY 364 (509)
Q Consensus 295 ~~~~~df~d~s~TeNtR~~yp~~~i~n~~~~~~~~~p~~iifl~~d--~~gvlPpvsklt~~qa~~~F~sGy 364 (509)
.+.-+.+.--..+++.+.--.+.|...+...+-.-.-+++-... .....-+..++..+..+.++.--+
T Consensus 127 --~~~k~k~~~~~~~~~~ii~sN~~p~~~~~~~al~rR~~ii~f~~~~~~~~~~~~~~i~~~e~~~~l~~~~ 196 (229)
T 2v9p_A 127 --IDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFRFEQPCTDESGEQPFNITDADWKSFFVRLW 196 (229)
T ss_dssp --CCCSSCCCCEECCCCEEEEESSCSTTCGGGGGGTTTEEEEECCCCCCCC---CCCCCCHHHHHHHHHHST
T ss_pred --EECCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHCEEEEECCCCCCCCCCCCEEECCCCCHHHHHHHHH
T ss_conf --7502588651468988997079988564314467326887779989887899542248245999999988
No 208
>>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} (A:93-282)
Probab=77.53 E-value=1 Score=24.37 Aligned_cols=19 Identities=42% Similarity=0.716 Sum_probs=16.0
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
..+.++-|.+|+||||+-.
T Consensus 6 ~~vv~ivG~~GsGKST~l~ 24 (190)
T 2ffh_A 6 RNLWFLVGLQGSGKTTTAA 24 (190)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CEEEEEECCCCCCCHHHHH
T ss_conf 6389985676676245799
No 209
>>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} (A:184-444)
Probab=77.41 E-value=1.1 Score=24.13 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=18.3
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
.+++.++.|-+|+|||||...
T Consensus 13 ~G~l~~i~G~~G~GKT~l~~~ 33 (261)
T 3bgw_A 13 RRNFVLIAARPSMGKTAFALK 33 (261)
T ss_dssp SSCEEEEEECSSSSHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHH
T ss_conf 103588873466514899986
No 210
>>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A (C:)
Probab=77.24 E-value=0.87 Score=24.78 Aligned_cols=19 Identities=47% Similarity=0.730 Sum_probs=16.6
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+++..+.|.||.|||||-.
T Consensus 46 Ge~~~liG~nGaGKSTLlk 64 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSA 64 (267)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 9899999689999999999
No 211
>>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A (A:191-454)
Probab=77.22 E-value=1.1 Score=24.20 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=18.0
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
.+++.++.|.||+|||||...
T Consensus 12 ~G~l~~i~G~~G~GKT~l~l~ 32 (264)
T 2r6a_A 12 RSDLIIVAARPSVGKTAFALN 32 (264)
T ss_dssp TTCEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHH
T ss_conf 786799973045402799999
No 212
>>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} (A:)
Probab=77.00 E-value=0.68 Score=25.48 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=15.1
Q ss_pred EEEEEECCCCCCCCCCCC
Q ss_conf 279983354311122247
Q gi|254780826|r 220 VALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d 237 (509)
..++.|.+|+||||++..
T Consensus 2 ~I~i~G~~GsGKST~a~~ 19 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEK 19 (214)
T ss_dssp EEEEEEEEEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
T ss_conf 899989987889999999
No 213
>>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} (A:)
Probab=76.99 E-value=1 Score=24.31 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=16.9
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
....+|+|.+|||||-|...
T Consensus 152 ~~gill~GppGtGKT~La~a 171 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHH
T ss_conf 88089989899980589999
No 214
>>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (D:1-191)
Probab=76.91 E-value=0.79 Score=25.05 Aligned_cols=20 Identities=40% Similarity=0.572 Sum_probs=17.0
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
-..+||+|..||||||+...
T Consensus 58 ~~~~Ll~GppG~GKT~~a~a 77 (191)
T 1sxj_D 58 LPHMLFYGPPGTGKTSTILA 77 (191)
T ss_dssp CCCEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
T ss_conf 87399889899998999999
No 215
>>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, ATP-binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus VF5} (A:)
Probab=76.86 E-value=0.68 Score=25.50 Aligned_cols=17 Identities=41% Similarity=0.649 Sum_probs=14.6
Q ss_pred EEEEECCCCCCCCCCCC
Q ss_conf 79983354311122247
Q gi|254780826|r 221 ALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 221 alfFGLSGTGKTTLS~d 237 (509)
.++.|.+|+||||++.-
T Consensus 3 I~i~G~~GsGKSTla~~ 19 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKK 19 (195)
T ss_dssp EEEECSTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
T ss_conf 99989988999999999
No 216
>>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase; HET: T5A; 1.98A {Escherichia coli} (A:)
Probab=76.85 E-value=0.98 Score=24.44 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=16.4
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-..++.|.+|+||||+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~ 22 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNV 22 (213)
T ss_dssp CEEEEEECTTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 3899989988869999999
No 217
>>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} (A:179-444)
Probab=76.85 E-value=0.99 Score=24.41 Aligned_cols=20 Identities=15% Similarity=0.295 Sum_probs=17.3
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+.+.+++|-||+||||+...
T Consensus 22 G~i~~i~G~~G~GKTt~~~q 41 (266)
T 2q6t_A 22 GSLNIIAARPAMGKTAFALT 41 (266)
T ss_dssp TCEEEEEECTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCCHHHHH
T ss_conf 40147773255322079999
No 218
>>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} (A:1-188)
Probab=76.82 E-value=0.84 Score=24.89 Aligned_cols=46 Identities=20% Similarity=0.194 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 8877899999986241078799312453477787027998335431112224
Q gi|254780826|r 185 GEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 185 GEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
.+.|+.+..+..+.+-..... ..+.......||+|..|||||.|..
T Consensus 27 ~~~k~~l~~~i~~~~~~~~~~------~~~~~~~~giLl~GPpGtGKT~la~ 72 (188)
T 3b9p_A 27 DVAKQALQEMVILPSVRPELF------TGLRAPAKGLLLFGPPGNGKTLLAR 72 (188)
T ss_dssp HHHHHHHHHHTHHHHHCGGGS------CGGGCCCSEEEEESSSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHH------HCCCCCCCEEEEECCCCCCCCHHHH
T ss_conf 999999999998175099988------3599998347877899998532544
No 219
>>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (C:1-168)
Probab=76.81 E-value=0.81 Score=25.00 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=18.1
Q ss_pred EEEEEEECCCCCCCCCCCCCCC
Q ss_conf 0279983354311122247886
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSASVDR 240 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d~~r 240 (509)
..++|||..||||||+...--+
T Consensus 47 ~~~ll~GppG~GKt~~a~~~a~ 68 (168)
T 1sxj_C 47 PHLLFYGPPGTGKTSTIVALAR 68 (168)
T ss_dssp CCEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 8699889799999999999998
No 220
>>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} (A:104-343)
Probab=76.77 E-value=1.1 Score=24.08 Aligned_cols=20 Identities=40% Similarity=0.418 Sum_probs=17.6
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+.+.+++|.+|+|||+|+..
T Consensus 19 G~i~~i~G~pG~GKT~l~~q 38 (240)
T 1v5w_A 19 MAITEAFGEFRTGKTQLSHT 38 (240)
T ss_dssp SEEEEEECCTTCTHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHH
T ss_conf 85999983768349999999
No 221
>>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} (A:)
Probab=76.75 E-value=0.8 Score=25.01 Aligned_cols=56 Identities=7% Similarity=-0.191 Sum_probs=30.2
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHH-HHHHHHHHHHHCCEEEEEE
Q ss_conf 9974232456662000125653121001050015683153-8999999988198099981
Q gi|254780826|r 359 YFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQY-GNILKDYIVKYCVDCWLVN 417 (509)
Q Consensus 359 ~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~y-a~ll~~~i~~~~~~vyLvN 417 (509)
....|.-.+++=.-.-..+|...+-- +|+--++...- -+++.+..++++..+-+|-
T Consensus 81 ~~~~g~k~R~~ia~al~~~P~iLiLD---EPt~~lD~~~~~~~~l~~~~~~~g~tvi~vs 137 (178)
T 1ye8_A 81 EELAIPILERAYREAKKDRRKVIIID---EIGKXELFSKKFRDLVRQIXHDPNVNVVATI 137 (178)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEEC---CCSTTGGGCHHHHHHHHHHHTCTTSEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEE---CCCCCCCHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 64210127899999972499889983---4785322136899987652115784699998
No 222
>>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* (A:494-600,A:749-842)
Probab=76.72 E-value=0.9 Score=24.68 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=17.6
Q ss_pred EEEEEEECCCCCCCCCCCCC
Q ss_conf 02799833543111222478
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSASV 238 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d~ 238 (509)
.-++|-|.||+|||||-.|-
T Consensus 31 ~~~~~tg~sgsgksslv~dT 50 (201)
T 2vf7_A 31 VMTSVTGVSGSGKSTLVSQA 50 (201)
T ss_dssp SEEEEECCTTSSHHHHCCCC
T ss_pred CEEEEEEECCCCCHHHHHHH
T ss_conf 57889863255620468888
No 223
>>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} (A:1-178)
Probab=76.71 E-value=1.3 Score=23.73 Aligned_cols=46 Identities=20% Similarity=0.138 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 8877899999986241078799312453477787027998335431112224
Q gi|254780826|r 185 GEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 185 GEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
.++|+-+..+..+.+... .....+.......|++|.+|||||++..
T Consensus 18 ~~~k~~l~~~i~~~~~~~------~~~~~g~~~~~g~Ll~GpPGtGKT~~a~ 63 (178)
T 1xwi_A 18 EGAKEALKEAVILPIKFP------HLFTGKRTPWRGILLFGPPGTGKSYLAK 63 (178)
T ss_dssp HHHHHHHHHHHHHHHHCG------GGSCTTCCCCSEEEEESSSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCH------HHHCCCCCCCCEEEEECCCCCCHHHHHH
T ss_conf 999999999999986099------9873799999806887989998899999
No 224
>>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} (A:1-346)
Probab=76.66 E-value=1 Score=24.36 Aligned_cols=95 Identities=17% Similarity=0.093 Sum_probs=46.6
Q ss_pred HHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHH--HHHHHHCCEEEEE--------
Q ss_conf 044418588999997423245666200012565312100105001568315389999--9998819809998--------
Q gi|254780826|r 347 PVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILK--DYIVKYCVDCWLV-------- 416 (509)
Q Consensus 347 pvsklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~--~~i~~~~~~vyLv-------- 416 (509)
.+..||-.|-+-.-+.-- -+.+|.-.+ |=+|.--+.+..-.++.. +.+.+.+..+-+|
T Consensus 225 ~~~~LSGGe~QRvaIA~a---------L~~~p~ill---lDEPTs~LD~~~r~~i~~li~~L~~~g~tVivvtHdl~~l~ 292 (346)
T 3bk7_A 225 ELHQLSGGELQRVAIAAA---------LLRKAHFYF---FDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLD 292 (346)
T ss_dssp BGGGCCHHHHHHHHHHHH---------HHSCCSEEE---EECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred CHHHCCHHHHHHHHHHHH---------HHCCCCHHH---HHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 547789999999998877---------735632332---31022049999999999999999874973555401289998
Q ss_pred --------ECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEC
Q ss_conf --------1674688768873207889999999998496024660667
Q gi|254780826|r 417 --------NTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVD 456 (509)
Q Consensus 417 --------NTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~~~~~~~~ 456 (509)
--|- .|.||+ -=..+.+|.-|+..++|.|.....+.-
T Consensus 293 ~l~D~i~v~~G~-~g~~g~--~~~p~~~r~~in~~l~g~l~~en~r~r 337 (346)
T 3bk7_A 293 YLSDVIHVVYGE-PGVYGI--FSKPKGTRNGINEFLQGYLKDENVRFR 337 (346)
T ss_dssp HHCSEEEEEESC-TTTEEE--ECCCEEHHHHHHHHHHTEETTTTEECC
T ss_pred HHCCEEEEECCC-CCEEEE--EEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 626899992477-845642--002056799999999987766676554
No 225
>>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerization motif; HET: DNA; 2.85A {Pyrococcus furiosus} (A:113-349)
Probab=76.50 E-value=1 Score=24.34 Aligned_cols=20 Identities=35% Similarity=0.611 Sum_probs=17.9
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+.+.+++|.+|+|||+|...
T Consensus 19 G~~~~i~G~pG~GKT~l~~~ 38 (237)
T 1pzn_A 19 QAITEVFGEFGSGKTQLAHT 38 (237)
T ss_dssp SEEEEEEESTTSSHHHHHHH
T ss_pred CEEEEEEECCCCCHHHHHHH
T ss_conf 82899981899879999999
No 226
>>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A (A:1-212,A:297-323)
Probab=76.42 E-value=1 Score=24.28 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=17.3
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
..+.++.|.||+|||||+..
T Consensus 5 ~kiivI~GpTGsGKt~La~~ 24 (239)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMA 24 (239)
T ss_dssp CEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
T ss_conf 95899989784179999999
No 227
>>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} (A:)
Probab=76.41 E-value=0.87 Score=24.78 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=17.5
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+.+.+++|.+|+|||||...
T Consensus 24 G~~~~i~G~~G~GKT~l~~q 43 (243)
T 1n0w_A 24 GSITEXFGEFRTGKTQICHT 43 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHH
T ss_pred CEEEEEEECCCCCHHHHHHH
T ss_conf 98999993899988999999
No 228
>>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} (A:231-503)
Probab=76.11 E-value=1.1 Score=24.09 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=17.9
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
.+.+.+++|.+|+|||||...
T Consensus 11 ~G~l~~i~G~~g~GKT~l~~~ 31 (273)
T 1q57_A 11 GGEVIMVTSGSGMVMSTFVRQ 31 (273)
T ss_dssp TTCEEEEEESSCHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHH
T ss_conf 775367763542429999999
No 229
>>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium, SGPP PSI; HET: 5GP POP; 1.80A {Plasmodium vivax} (A:1-43,A:94-204)
Probab=76.05 E-value=1 Score=24.30 Aligned_cols=18 Identities=39% Similarity=0.436 Sum_probs=15.7
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
-+.+|-|.||.||+||--
T Consensus 13 ~~~~~~gp~g~g~~~~~~ 30 (154)
T 2qor_A 13 PPLVVCGPSGVGKGTLIK 30 (154)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCCCHHHHHH
T ss_conf 838998999999999999
No 230
>>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:1405-1637)
Probab=76.04 E-value=0.9 Score=24.68 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=17.5
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+.+.+++|-+|+|||+|...
T Consensus 23 Gsit~i~G~pGsGKT~l~lq 42 (233)
T 3cmu_A 23 GRIVEIYGPESSGKTTLTLQ 42 (233)
T ss_dssp TSEEEEECCTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHH
T ss_conf 51799878887883269999
No 231
>>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli} (A:1-166)
Probab=75.81 E-value=0.95 Score=24.52 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=15.8
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
...||.|..|||||++.-.
T Consensus 25 ~~iLl~GppGtGKt~lA~~ 43 (166)
T 1a5t_A 25 HALLIQALPGMGDDALIYA 43 (166)
T ss_dssp SEEEEECCTTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 2584689999779999999
No 232
>>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein kinase inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} (A:1-120,A:185-217)
Probab=75.59 E-value=1.1 Score=24.20 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=21.3
Q ss_pred EEEEEEECCCCCCCCCCCC----CCCEEEECCCEEE
Q ss_conf 0279983354311122247----8861330311021
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS----VDRFLIGDDEHGW 250 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d----~~r~LigDDehgW 250 (509)
-..+.+|.+|+||||+... .+-..|.-|+..|
T Consensus 6 ~~I~IiG~PGSGKTTlak~LA~~lg~~~I~~dd~~~ 41 (153)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLR 41 (153)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCEEECHHHHHH
T ss_conf 059998999998799999999987986776899999
No 233
>>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} (A:)
Probab=75.52 E-value=0.98 Score=24.44 Aligned_cols=18 Identities=50% Similarity=0.571 Sum_probs=15.6
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
-+.+|-|.+|+|||||..
T Consensus 7 ~vi~i~G~~GsGKTTll~ 24 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLK 24 (174)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred EEEEEEECCCCCHHHHHH
T ss_conf 079999259998999999
No 234
>>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein transport; HET: ADP; 2.80A {Aquifex aeolicus VF5} PDB: 2eww_A* 2gsz_A* (A:125-372)
Probab=75.52 E-value=0.99 Score=24.42 Aligned_cols=19 Identities=42% Similarity=0.566 Sum_probs=15.8
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-..+|.|..|+|||||...
T Consensus 13 g~ili~GptGsGKTtll~a 31 (248)
T 2ewv_A 13 GLILVTGPTGSGKSTTIAS 31 (248)
T ss_dssp EEEEEECSSSSSHHHHHHH
T ss_pred HCEEEECCCCCCCCHHHHH
T ss_conf 1268866887773019999
No 235
>>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* (A:)
Probab=75.51 E-value=1.2 Score=23.97 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=16.5
Q ss_pred CCEEEEEEECCCCCCCCCCC
Q ss_conf 87027998335431112224
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~ 236 (509)
.+....+.|.||+|||||-.
T Consensus 44 ~Ge~~~IiG~sGsGKSTllk 63 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAA 63 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHH
T ss_conf 99899999999987999999
No 236
>>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, cytoplasm, DNA damage, DNA recombination; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... (A:35-271)
Probab=75.29 E-value=1.1 Score=24.23 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=17.6
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+.+.+++|-+|+|||+|...
T Consensus 27 G~i~~i~G~pGsGKT~l~lq 46 (237)
T 2zr9_A 27 GRVIEIYGPESSGKTTVALH 46 (237)
T ss_dssp TSEEEEEESTTSSHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
T ss_conf 82899988876778999999
No 237
>3cf2_A P97VCP IN COMPLEX WITH ADPAMP-Pnp {Mus musculus} (A:)
Probab=74.99 E-value=1.1 Score=24.05 Aligned_cols=18 Identities=44% Similarity=0.739 Sum_probs=13.2
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
...||.|.+|||||+|..
T Consensus 512 ~giLl~G~pGtGKT~la~ 529 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAK 529 (806)
T ss_dssp SCCEEESSTTSSHHHHHH
T ss_pred CCEECCCCCCCCCCHHHH
T ss_conf 301202411012311345
No 238
>>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} (A:)
Probab=74.96 E-value=1.1 Score=24.20 Aligned_cols=58 Identities=12% Similarity=0.136 Sum_probs=32.6
Q ss_pred HHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHH--HHHHHCCEEEEEEC
Q ss_conf 44185889999974232456662000125653121001050015683153899999--99881980999816
Q gi|254780826|r 349 AYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKD--YIVKYCVDCWLVNT 418 (509)
Q Consensus 349 sklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~--~i~~~~~~vyLvNT 418 (509)
+.||..|-...-+. -.-+.+|.-.+ +-+|+--+.|....+++.- .+++.+..+-++-.
T Consensus 138 ~~LSgG~kqrv~iA---------~al~~~P~ili---lDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~vth 197 (240)
T 1ji0_A 138 GTLSGGEQQXLAIG---------RALXSRPKLLX---XDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQ 197 (240)
T ss_dssp SSSCHHHHHHHHHH---------HHHTTCCSEEE---EECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHCCHHHHHHHHHH---------HHHHHCCCEEE---ECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 33899999999999---------99983999899---73875459999999999999999844999999938
No 239
>>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural genomics, PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} (A:)
Probab=74.77 E-value=0.9 Score=24.70 Aligned_cols=19 Identities=37% Similarity=0.462 Sum_probs=16.7
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
.+.+|-|.+|.|||||...
T Consensus 5 ~vi~i~G~~GsGKTTll~~ 23 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLXEK 23 (169)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 5999982999989999999
No 240
>>1sgw_A Putative ABC transporter; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Pyrococcus furiosus dsm 3638} (A:1-88,A:151-214)
Probab=74.58 E-value=1.1 Score=24.24 Aligned_cols=19 Identities=47% Similarity=0.637 Sum_probs=16.0
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+....+.|.||.|||||--
T Consensus 35 Ge~v~lvGpnGsGKSTllk 53 (152)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLK 53 (152)
T ss_dssp TCCEEEECCTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 9799999999972999999
No 241
>>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus dsm 4304} PDB: 2oaq_1 (1:261-446)
Probab=74.58 E-value=1.1 Score=24.17 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=14.4
Q ss_pred EEEEEECCCCCCCCCCCC
Q ss_conf 279983354311122247
Q gi|254780826|r 220 VALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d 237 (509)
..||.|.+|+|||||-..
T Consensus 2 nili~G~tGSGKTTll~a 19 (186)
T 2oap_1 2 SAIVVGETASGKTTTLNA 19 (186)
T ss_dssp CEEEEESTTSSHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHH
T ss_conf 399993765554899999
No 242
>>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Bacteriophage T7} (A:24-296)
Probab=74.37 E-value=1.5 Score=23.18 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=17.8
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
.+.+.++.|-+|+|||||...
T Consensus 11 ~G~i~~i~G~~G~GKT~l~~~ 31 (273)
T 1cr0_A 11 GGEVIMVTSGSGMGKSTFVRQ 31 (273)
T ss_dssp TTCEEEEEESTTSSHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHH
T ss_conf 984899997899859999999
No 243
>>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} (A:)
Probab=74.29 E-value=0.92 Score=24.63 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=20.6
Q ss_pred EECCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 3124534777870279983354311122247
Q gi|254780826|r 207 MHCSINMDKEKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 207 mHcsan~~~~~~d~alfFGLSGTGKTTLS~d 237 (509)
|..+.+--++..--.++.|.+|+|||+|-..
T Consensus 5 ~~~~~~~~~~~~~kivivG~~~vGKTSli~r 35 (181)
T 1fzq_A 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQ 35 (181)
T ss_dssp HHHHCSSCCSSCEEEEEEESTTSSHHHHHHH
T ss_pred HHHHCCCCCCCCCEEEEECCCCCCHHHHHHH
T ss_conf 9975302688866899999999899999999
No 244
>>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} (A:93-277)
Probab=74.23 E-value=1.5 Score=23.31 Aligned_cols=19 Identities=42% Similarity=0.716 Sum_probs=16.3
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
..+.++-|..|+||||+-.
T Consensus 6 ~~vv~i~G~~GsGKTT~i~ 24 (185)
T 1ls1_A 6 RNLWFLVGLQGSGKTTTAA 24 (185)
T ss_dssp SEEEEEECCTTTTHHHHHH
T ss_pred CEEEEEECCCCCCCHHHHH
T ss_conf 7499996788887122799
No 245
>>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} (A:1-181)
Probab=74.18 E-value=1.1 Score=24.08 Aligned_cols=47 Identities=23% Similarity=0.259 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 88778999999862410787993124534777870279983354311122247
Q gi|254780826|r 185 GEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 185 GEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d 237 (509)
.+.|+-+-.+..+.....-.-.+ +.. .-...|++|.+|||||.|...
T Consensus 18 ~~~k~~l~~~~~~~~~~~~~~~~--~~~----~~~giLl~GppGtGKT~la~a 64 (181)
T 1lv7_A 18 DEAKEEVAELVEYLREPSRFQKL--GGK----IPKGVLMVGPPGTGKTLLAKA 64 (181)
T ss_dssp HHHHHHTHHHHHHHHCGGGC-------C----CCCEEEEECCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHC--CCC----CCCEEEEECCCCCCHHHHHHH
T ss_conf 99999999999998799999975--999----897578668999877699999
No 246
>>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* (C:115-314)
Probab=73.76 E-value=1.5 Score=23.14 Aligned_cols=21 Identities=48% Similarity=0.702 Sum_probs=17.2
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
+..+..+-|.+|.|||||-.-
T Consensus 14 ~~~vi~ivGp~GaGKTTli~~ 34 (200)
T 3e70_C 14 KPYVIMFVGFNGSGKTTTIAK 34 (200)
T ss_dssp SSEEEEEECCTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCCCCHHHH
T ss_conf 987999966877875430899
No 247
>>2gno_A DNA polymerase III, gamma subunit-related protein; TM0771, structural genomics, PSI, protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima MSB8} (A:1-140)
Probab=73.74 E-value=1.1 Score=24.14 Aligned_cols=19 Identities=16% Similarity=-0.071 Sum_probs=16.3
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
...||.|..||||||+...
T Consensus 19 ~~iLl~GppG~GKT~la~~ 37 (140)
T 2gno_A 19 ISILINGEDLSYPREVSLE 37 (140)
T ss_dssp EEEEEECSSSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 6598889899887999999
No 248
>>2fna_A Conserved hypothetical protein; 13814777, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.00A {Sulfolobus solfataricus P2} (A:1-208)
Probab=73.60 E-value=1.3 Score=23.70 Aligned_cols=19 Identities=32% Similarity=0.573 Sum_probs=16.3
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
...|+.|..|||||+|...
T Consensus 31 ~~iLL~GPpG~GKT~l~~~ 49 (208)
T 2fna_A 31 PITLVLGLRRTGKSSIIKI 49 (208)
T ss_dssp SEEEEEESTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 9899983999979999999
No 249
>>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} (A:1-177)
Probab=73.36 E-value=1.1 Score=23.99 Aligned_cols=19 Identities=37% Similarity=0.583 Sum_probs=16.1
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
...||.|..||||||+.-.
T Consensus 39 ~~~Ll~GppG~GKT~~A~~ 57 (177)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARL 57 (177)
T ss_dssp SEEEEESCTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 2376579999879999999
No 250
>>3co5_A Putative two-component system transcriptional response regulator; structural genomics, APC89341.1, sigma-54 interaction domain; 2.40A {Neisseria gonorrhoeae fa 1090} (A:27-143)
Probab=73.27 E-value=1.2 Score=23.84 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=16.9
Q ss_pred EEEEEECCCCCCCCCCCCCCC
Q ss_conf 279983354311122247886
Q gi|254780826|r 220 VALFFGLSGTGKTTLSASVDR 240 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d~~r 240 (509)
..++.|-+|||||++..-=||
T Consensus 3 pvLl~Ge~GtGKt~lAraih~ 23 (117)
T 3co5_A 3 PVFLTGEAGSPFETVARYFHK 23 (117)
T ss_dssp CEEEEEETTCCHHHHHGGGCC
T ss_pred CEEEECCCCCCHHHHHHHHHH
T ss_conf 189981899788999999986
No 251
>>2get_A Pantothenate kinase; homodimer, COA biosynthesis, nucleotide binding, transferase; HET: CME COK; 2.35A {Mycobacterium tuberculosis H37RV} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* (A:1-131,A:196-312)
Probab=73.05 E-value=2.3 Score=22.03 Aligned_cols=21 Identities=19% Similarity=0.142 Sum_probs=16.5
Q ss_pred CCCCEEEEEEECCCCCCCCCC
Q ss_conf 778702799833543111222
Q gi|254780826|r 215 KEKEDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 215 ~~~~d~alfFGLSGTGKTTLS 235 (509)
+.+-.+.+|.|+-|.||||-.
T Consensus 87 ~~~p~VI~lvGptGVGKTTTi 107 (248)
T 2get_A 87 RPVPFIIGVAGSVAVGKSTTA 107 (248)
T ss_dssp CCCCEEEEEEECTTSSHHHHH
T ss_pred CCCCEEEEEECCCCCCCCHHH
T ss_conf 899889997279888738999
No 252
>>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* (A:1-70,A:135-245)
Probab=72.81 E-value=1.2 Score=23.93 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=15.7
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-+...-|.||+|||||+..
T Consensus 26 ~~i~i~G~~gsGKsT~a~~ 44 (181)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEK 44 (181)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 8999789986649999999
No 253
>>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} (A:167-319)
Probab=72.79 E-value=1.8 Score=22.74 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=15.7
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-.++..|..||||||+-..
T Consensus 27 ~~~~i~G~~GTGKT~~l~~ 45 (153)
T 2zpa_A 27 GVAAVTAARGRGKSALAGQ 45 (153)
T ss_dssp EEEEEEECTTSSHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHH
T ss_conf 6469972667868999999
No 254
>>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} (A:332-428,A:499-582)
Probab=72.73 E-value=1.6 Score=23.02 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=16.7
Q ss_pred CCCEEEEEEECCCCCCCCCCCC
Q ss_conf 7870279983354311122247
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d 237 (509)
.| ....+-|.||.|||||..-
T Consensus 37 ~G-e~vaivG~sGsGKSTll~~ 57 (181)
T 3b60_A 37 AG-KTVALVGRSGSGKSTIASL 57 (181)
T ss_dssp TT-CEEEEEECTTSSHHHHHHH
T ss_pred CC-EEEEEECCCCCCHHHHHHH
T ss_conf 78-5999989999879999999
No 255
>>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} (A:79-259)
Probab=72.69 E-value=1.7 Score=22.90 Aligned_cols=78 Identities=10% Similarity=0.123 Sum_probs=50.7
Q ss_pred CCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 15683153899999998819809998167468876887320788999999999849602466066788774256207989
Q gi|254780826|r 391 MPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPLEVKGV 470 (509)
Q Consensus 391 ~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~~~~~~~~~~f~l~iP~~~~gv 470 (509)
+|+.+.-+.-+=.+.++.-+-.++|||+| |=++=.+.++++|+-+|++. .--.+.|.-|=+...-..
T Consensus 103 ~plt~~T~~li~~~~l~~mk~~a~lIN~~----------RG~ivde~aL~~aL~~g~i~---~a~lDV~~~EP~~~~~~~ 169 (181)
T 3gvx_A 103 IPLTDKTRGXVNSRLLANARKNLTIVNVA----------RADVVSKPDXIGFLKERSDV---WYLSDVWWNEPEITETNL 169 (181)
T ss_dssp CCCCTTTTTCBSHHHHTTCCTTCEEEECS----------CGGGBCHHHHHHHHHHCTTC---EEEESCCTTTTSCCSCCC
T ss_pred CCCCCCCCCCCCCCHHCCCCCHHEEECCC----------CHHHHHHHHHHHHHHHCCEE---EEEECCCCCCCCCCCCCC
T ss_conf 87633551212430120354200011145----------24433137778777518656---999678999999866799
Q ss_pred CHHHCCHHHHC
Q ss_conf 96564976625
Q gi|254780826|r 471 DRKLLNPRDSW 481 (509)
Q Consensus 471 ~~~~l~P~~~w 481 (509)
|.-++.|...|
T Consensus 170 ~nv~~TPH~a~ 180 (181)
T 3gvx_A 170 RNAILSPHVAG 180 (181)
T ss_dssp SSEEECCSCSS
T ss_pred CCEEECCCHHH
T ss_conf 98898987012
No 256
>>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} (A:)
Probab=72.67 E-value=1.4 Score=23.38 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=28.0
Q ss_pred CCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 10787993124534777870279983354311122247
Q gi|254780826|r 200 PERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 200 p~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d 237 (509)
+..+..|-+++.+...+..--.++.|-+|.|||+|-..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~KIvivGd~gVGKTSLi~r 47 (205)
T 1gwn_A 10 HSSGLVPRGSHMDPNQNVKCKIVVVGDSQCGKTALLHV 47 (205)
T ss_dssp -----------------CEEEEEEEESTTSSHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHH
T ss_conf 35577888777994535786999999899888999999
No 257
>>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} (A:)
Probab=72.64 E-value=1.4 Score=23.49 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=22.0
Q ss_pred CEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 8799312453477787027998335431112224
Q gi|254780826|r 203 GIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 203 g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
+..+-.+..+...+..--.+++|.+|+|||||-.
T Consensus 13 ~~~~~~~~~~~~~~~~~ki~i~G~~~vGKTsli~ 46 (199)
T 2p5s_A 13 GLVPRGSAKSFSSQKAYKIVLAGDAAVGKSSFLM 46 (199)
T ss_dssp ---------------CEEEEEESSTTSSHHHHHH
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHH
T ss_conf 8676887777776766499999999979999999
No 258
>>2awn_A Maltose/maltodextrin import ATP-binding protein MALK; ATP-binding cassette, transport protein; HET: ADP; 2.30A {Escherichia coli K12} (A:1-236)
Probab=72.53 E-value=1.5 Score=23.20 Aligned_cols=26 Identities=35% Similarity=0.634 Sum_probs=19.2
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 4534777870279983354311122247
Q gi|254780826|r 210 SINMDKEKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 210 san~~~~~~d~alfFGLSGTGKTTLS~d 237 (509)
|..+. .| +...+-|.||.|||||-.-
T Consensus 23 sl~i~-~G-ei~~iiG~nGaGKSTLl~~ 48 (236)
T 2awn_A 23 NLDIH-EG-EFVVFVGPSGCGKSTLLRM 48 (236)
T ss_dssp EEEEC-TT-CEEEEECCTTSSHHHHHHH
T ss_pred EEEEC-CC-CEEEEECCCCCHHHHHHHH
T ss_conf 87988-99-8999999999839999999
No 259
>>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} (B:)
Probab=72.50 E-value=1.2 Score=23.85 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=17.1
Q ss_pred CEEEEEEECCCCCCCCCCCCC
Q ss_conf 702799833543111222478
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSASV 238 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d~ 238 (509)
.-..++-|.+|+||||++..=
T Consensus 24 ~~~I~i~G~~GsGKST~~~~L 44 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNIL 44 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHH
T ss_conf 998999898888699999999
No 260
>>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* (A:1019-1284)
Probab=72.39 E-value=1.5 Score=23.14 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=16.8
Q ss_pred CCEEEEEEECCCCCCCCCCC
Q ss_conf 87027998335431112224
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~ 236 (509)
.+....+.|-||.|||||-.
T Consensus 40 ~Ge~v~ivG~sGsGKSTLl~ 59 (266)
T 3g5u_A 40 KGQTLALVGSSGCGKSTVVQ 59 (266)
T ss_dssp SSSEEEEECSSSTTHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
T ss_conf 98999998999984999999
No 261
>>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} (A:)
Probab=72.14 E-value=1.4 Score=23.45 Aligned_cols=38 Identities=29% Similarity=0.219 Sum_probs=26.8
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCC
Q ss_conf 870279983354311122247886133031102156741
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGV 255 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d~~r~LigDDehgW~d~gv 255 (509)
.+++.++.|-.|.|||||+--=-|. +|.++..-|+...
T Consensus 32 ~g~ii~L~G~lGAGKTtlvr~l~~~-lg~~~~V~SPTft 69 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQG-IGHQGNVKSPTYT 69 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH-TTCCSCCCCCTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH-CCCCCCCCCCCCH
T ss_conf 9869999878768999999999997-6877877799505
No 262
>>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: CIT; 1.60A {Thermotoga maritima} (A:)
Probab=72.12 E-value=1.1 Score=24.05 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=17.4
Q ss_pred CCCEEEEEEECCCCCCCCCCCC
Q ss_conf 7870279983354311122247
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d 237 (509)
....+.+|-|+.|.||||.-+-
T Consensus 102 ~~~~vi~~vGptGvGKTTTiaK 123 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCCCCHHHHH
T ss_conf 4423887415556676416999
No 263
>>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} (A:1-202)
Probab=71.87 E-value=1.4 Score=23.38 Aligned_cols=19 Identities=26% Similarity=0.581 Sum_probs=16.8
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
...++.|..|+|||||...
T Consensus 32 ~~v~i~G~~G~GKTsL~~~ 50 (202)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRA 50 (202)
T ss_dssp SEEEEECCTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 9799981999989999999
No 264
>>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolase/protein binding complex; 2.40A {Helicobacter pylori 26695} (A:139-330)
Probab=71.79 E-value=1.4 Score=23.45 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=15.2
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
-..+|-|.+|+|||||-.
T Consensus 34 ~~ili~G~tGsGKTTll~ 51 (192)
T 2pt7_A 34 KNVIVCGGTGSGKTTYIK 51 (192)
T ss_dssp CCEEEEESTTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
T ss_conf 867999503798278889
No 265
>>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, acetylation, ATP-binding, cytoplasm, lipid-binding, nucleotide-binding; HET: ADP; 3.00A {Mus musculus} (A:1-185,A:283-301)
Probab=71.65 E-value=1.4 Score=23.42 Aligned_cols=48 Identities=21% Similarity=0.359 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 88778999999862410787993124534777870279983354311122247
Q gi|254780826|r 185 GEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 185 GEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d 237 (509)
.+.|+-+.......+.....+ ....+. .....|++|..|||||++...
T Consensus 21 ~~~k~~l~~~i~~~l~~~~~~---~~~g~~--~~kgiLl~GPpGTGKT~la~a 68 (204)
T 3cf0_A 21 EDVKRELQELVQYPVEHPDKF---LKFGMT--PSKGVLFYGPPGCGKTLLAKA 68 (204)
T ss_dssp HHHHHHHHHHHHHHHHCHHHH---HHHCCC--CCSEEEEECSSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHH---HHCCCC--CCCEEEEECCCCCCEEHHHHH
T ss_conf 999999999999987499999---857999--886368767999960111343
No 266
>>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,; 1.75A {Escherichia coli} (A:1-37,A:122-227)
Probab=71.22 E-value=1.3 Score=23.54 Aligned_cols=18 Identities=44% Similarity=0.477 Sum_probs=15.3
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
.+.++-|+||+||||+.-
T Consensus 6 ~~~~~~g~~g~gk~~~~~ 23 (143)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (143)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
T ss_conf 889987999888899999
No 267
>>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* (A:)
Probab=71.11 E-value=1.5 Score=23.30 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=15.6
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
--.+++|.+|+|||||-.
T Consensus 21 ~ki~lvG~~~vGKTsLi~ 38 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQK 38 (196)
T ss_dssp CEEEEEESTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
T ss_conf 199999989999999999
No 268
>>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular switch, RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus P2} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* (A:89-324)
Probab=71.04 E-value=1.6 Score=22.96 Aligned_cols=22 Identities=14% Similarity=0.090 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHCCEEEEEEC
Q ss_conf 5389999999881980999816
Q gi|254780826|r 397 QYGNILKDYIVKYCVDCWLVNT 418 (509)
Q Consensus 397 ~ya~ll~~~i~~~~~~vyLvNT 418 (509)
.-+..|....+++++.++++|.
T Consensus 147 ~~~~~l~~~~~~~~~~v~~~~~ 168 (236)
T 2z43_A 147 KHLHQLTRLAEVYDIAVIITNQ 168 (236)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEEEE
T ss_conf 9999998653204737999712
No 269
>>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} (F:92-284)
Probab=70.84 E-value=2 Score=22.43 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=17.7
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
+..+.++=|..|.||||+++.
T Consensus 6 ~~~vi~itG~~GvGKTT~~~~ 26 (193)
T 1j8m_F 6 IPYVIMLVGVQGTGKTTTAGK 26 (193)
T ss_dssp SSEEEEEECSSCSSTTHHHHH
T ss_pred CCEEEEEECCCCCCCHHHHHH
T ss_conf 987999846655562157999
No 270
>>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, hydrolase; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* (A:150-344,A:555-574)
Probab=70.79 E-value=1.6 Score=22.96 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=15.6
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
...++..|..||||||+-.
T Consensus 55 ~~~~~i~G~pGTGKT~~~~ 73 (215)
T 3e1s_A 55 HRLVVLTGGPGTGKSTTTK 73 (215)
T ss_dssp CSEEEEECCTTSCHHHHHH
T ss_pred CCCEEEECCCCCHHHHHHH
T ss_conf 9956831775311799999
No 271
>>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A (A:428-654)
Probab=70.71 E-value=1.6 Score=23.06 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=31.5
Q ss_pred CCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 760444185889999974232456662000125653121001050015683153899999998819809998
Q gi|254780826|r 345 LPPVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLV 416 (509)
Q Consensus 345 lPpvsklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~~i~~~~~~vyLv 416 (509)
-.|++.||..|-+--.+..-- +.+|.-.+-- +|---+.+.-- ..|.+.|++.+..+-+|
T Consensus 116 ~~~~~~LSGGqkqRv~lA~~l---------~~~p~lLiLD---EPTn~LD~~s~-~~l~~~L~~~~~tvilV 174 (227)
T 2iw3_A 116 AXPISALSGGWKXKLALARAV---------LRNADILLLD---EPTNHLDTVNV-AWLVNYLNTCGITSITI 174 (227)
T ss_dssp HSBGGGCCHHHHHHHHHHHHH---------HTTCSEEEEE---STTTTCCHHHH-HHHHHHHHHSCSEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHH---------HCCCCEEEEE---CCCCCCCHHHH-HHHHHHHHHHCCEEEEE
T ss_conf 372888788999999999987---------3799813536---89775799999-99999987507417999
No 272
>>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} (A:1-254)
Probab=70.12 E-value=1.8 Score=22.75 Aligned_cols=40 Identities=5% Similarity=-0.220 Sum_probs=25.3
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEC--CCCCC
Q ss_conf 00105001568315389999999881980999816--74688
Q gi|254780826|r 384 ACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLVNT--GWTAG 423 (509)
Q Consensus 384 ~cFg~PF~~~~p~~ya~ll~~~i~~~~~~vyLvNT--Gw~Gg 423 (509)
.+|....--.........|....+++++.++++|- -+.+.
T Consensus 149 ~l~~~~~~~~~~~~~~~~L~~~a~~~~~~~i~~~~~~~~~~~ 190 (254)
T 1tf7_A 149 SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGP 190 (254)
T ss_dssp TTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCC
T ss_conf 887643689999999999999998509809999977325675
No 273
>>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} (A:324-582)
Probab=70.06 E-value=1.8 Score=22.77 Aligned_cols=19 Identities=32% Similarity=0.576 Sum_probs=15.7
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+....+-|.||.|||||--
T Consensus 46 Ge~~aivG~sGsGKSTLl~ 64 (259)
T 3b5x_A 46 GKTVALVGRSGSGKSTIAN 64 (259)
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 9899999999986999999
No 274
>>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* (A:154-332)
Probab=69.98 E-value=1.6 Score=23.04 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=14.7
Q ss_pred EEEEEECCCCCCCCCCC
Q ss_conf 27998335431112224
Q gi|254780826|r 220 VALFFGLSGTGKTTLSA 236 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~ 236 (509)
-.+|.|++|.|||+|-.
T Consensus 4 Kv~iiG~~~vGKTsli~ 20 (179)
T 2wkq_A 4 KCVVVGDGAVGKTCLLI 20 (179)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred CCEEECCCCCCHHHHHH
T ss_conf 52468989948999999
No 275
>>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} (A:)
Probab=69.87 E-value=1.7 Score=22.80 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=15.0
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
-..+++|.+|+|||||-.
T Consensus 40 ~kv~i~G~~g~GKSSLin 57 (270)
T 1h65_A 40 LTILVXGKGGVGKSSTVN 57 (270)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
T ss_conf 679998999998999999
No 276
>>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} (A:1-185)
Probab=69.61 E-value=1.6 Score=22.97 Aligned_cols=19 Identities=37% Similarity=0.583 Sum_probs=16.2
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
...||.|..|||||+|...
T Consensus 46 ~~lLl~GppG~GKt~la~~ 64 (185)
T 1njg_A 46 HAYLFSGTRGVGKTSIARL 64 (185)
T ss_dssp SEEEEECSTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 0698889998768999999
No 277
>>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, cytoplasm, nucleotide- binding, hydrolase; HET: ADP; 3.11A {Methanocaldococcus jannaschii} (A:1-187)
Probab=69.21 E-value=1.6 Score=22.97 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 8877899999986241078799312453477787027998335431112224
Q gi|254780826|r 185 GEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 185 GEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
.++|+-+.......+...... +..... . ....|++|.+|||||.+..
T Consensus 23 ~~~k~~l~~~i~~~~~~~~~~---~~~~~~-~-~~giLl~GPpGtGKT~~a~ 69 (187)
T 3h4m_A 23 EKQMQEIREVVELPLKHPELF---EKVGIE-P-PKGILLYGPPGTGKTLLAK 69 (187)
T ss_dssp HHHHHHHHHHTHHHHHCHHHH---HHHCCC-C-CSEEEEESSSSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHH---HHCCCC-C-CCEEEEECCCCCCHHHHHH
T ss_conf 999999999999985099999---867999-8-8636887899998019999
No 278
>>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcription; HET: ATP; 2.95A {Saccharomyces cerevisiae} (A:118-328)
Probab=68.80 E-value=1.9 Score=22.51 Aligned_cols=21 Identities=38% Similarity=0.438 Sum_probs=17.7
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
..-+.++-|..|+||||+++.
T Consensus 20 ~~~~ilv~G~gGvGKTT~~~~ 40 (211)
T 2npi_A 20 EGPRVVIVGGSQTGKTSLSRT 40 (211)
T ss_dssp SCCCEEEEESTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
T ss_conf 598899989998788999999
No 279
>>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} (A:)
Probab=68.49 E-value=2.2 Score=22.16 Aligned_cols=140 Identities=11% Similarity=0.039 Sum_probs=61.4
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCC--CHHHHHHHHHCCHHHCCCEECC
Q ss_conf 70279983354311122247886133031102156741234555321101358333--5135887530110312400578
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKET--EPEIFSASCRFGTVLENVVVDE 295 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d~~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~--EP~I~~aa~~~~ailENV~~d~ 295 (509)
....+|.|.+|||||||..-= ..++|+....+...+--..-.+++.|...+-.|. ...+... ...-+++.+-.+.-
T Consensus 58 ~~~~~l~G~~g~GKstl~~~l-~~~~g~~~~~~~~~~~~~~~~~l~~k~~~~~~e~~~~~~~~~~-~~lk~l~~g~~~~~ 135 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSF-IHFIQGAVISFVNSTSHFWLEPLTDTKVAMLDDATTTCWTYFD-TYMRNALDGNPISI 135 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHH-HHHHTCEECCCCCSSSCGGGGGGTTCSSEEEEEECHHHHHHHH-HHCHHHHHTCCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHH-HHHHCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHH-HHHHHCCCCCEEEE
T ss_conf 518999889985588999999-9984772674056778764665678818999667650467778-99885359984676
Q ss_pred CCCEECCCCCCCCCEEEEEECCCCCCCCCCCC--CCCCCEEEEEECC--CCCCCCHHHHCCHHHHHHHHHH
Q ss_conf 98111147886767058986000431000256--7887269996026--7788760444185889999974
Q gi|254780826|r 296 CGIPNFKDSSVTENTRAAYPLNFIHNHAPQSI--GKHPKHVIMLAAD--AFGVLPPVAYLNPEKAVYYFLS 362 (509)
Q Consensus 296 ~~~~df~d~s~TeNtR~~yp~~~i~n~~~~~~--~~~p~~iifl~~d--~~gvlPpvsklt~~qa~~~F~s 362 (509)
. .-+.+.--..+++++.--.+.|...+... ..+ ..+|=+... ...--.+..++..+-++.+|..
T Consensus 136 ~--~k~~~~~~~~~~~vi~~tN~~p~~~~~~~ai~rR-~~~i~f~~~~~~~~~~~~~~~i~~~~~~~~~~~ 203 (212)
T 1tue_A 136 D--RKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESR-ITVFEFPNAFPFDKNGNPVYEINDKNWKCFFER 203 (212)
T ss_dssp C------CCEEECCCCEEEEESSCTTSSSSCHHHHTS-CEEEECCSCCCBCTTSCBSCCCCHHHHHHHHHH
T ss_pred E--CCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHE-EEEEECCCCCCCCCCCCEEEECCCHHHHHHHHH
T ss_conf 2--3679862035898899837898866553535651-799887995897999972021171289999999
No 280
>>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, ABC ATPase, dimer, kleisin, mitosis, cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} (A:1-156,A:355-430)
Probab=68.48 E-value=1.9 Score=22.60 Aligned_cols=18 Identities=22% Similarity=0.538 Sum_probs=15.7
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
...++.|.+|+|||||-.
T Consensus 27 ~i~~IiGpNGsGKSTll~ 44 (232)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMD 44 (232)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
T ss_conf 989999999998999999
No 281
>>2w0m_A SSO2452; RECA, SSPF, unknown function; 2.0A {Sulfolobus solfataricus P2} (A:)
Probab=67.75 E-value=1.9 Score=22.59 Aligned_cols=20 Identities=35% Similarity=0.341 Sum_probs=17.5
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+.+.++.|-+|+|||+|...
T Consensus 23 G~i~~i~G~pGsGKT~l~lq 42 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLH 42 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHH
T ss_pred CEEEEEEECCCCCHHHHHHH
T ss_conf 95999996899999999999
No 282
>>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} (A:50-315)
Probab=67.71 E-value=2.4 Score=21.84 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=18.0
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
.+.+.++.|-||+|||||...
T Consensus 18 ~G~l~~i~G~~G~GKT~l~~~ 38 (266)
T 3bh0_A 18 RRNFVLIAARPSMGKTAFALK 38 (266)
T ss_dssp TTCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHH
T ss_conf 782899514234414899999
No 283
>>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} (A:)
Probab=67.50 E-value=2.2 Score=22.05 Aligned_cols=22 Identities=41% Similarity=0.570 Sum_probs=17.2
Q ss_pred CCCEEEEEEECCCCCCCCCCCC
Q ss_conf 7870279983354311122247
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d 237 (509)
+..--.++.|.+|.|||+|-..
T Consensus 16 ~~~~kI~iiG~~gvGKTSLi~r 37 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKK 37 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHH
T ss_conf 6467999999899998999999
No 284
>>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure 2 function project, S2F, unknown function; 2.00A {Escherichia coli} (A:1-204)
Probab=67.10 E-value=4.8 Score=19.86 Aligned_cols=19 Identities=47% Similarity=0.651 Sum_probs=16.2
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-+.++=|.-|+|||||-..
T Consensus 5 ~v~~v~GflGsGKTTll~~ 23 (204)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRH 23 (204)
T ss_dssp EEEEEEESSSSSCHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHH
T ss_conf 7899971878999999999
No 285
>>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, X-RAY diffraction, structural genomics, NPPSFA; HET: ADP; 2.00A {Pyrococcus horikoshii OT3} (A:)
Probab=66.69 E-value=2.2 Score=22.13 Aligned_cols=20 Identities=45% Similarity=0.615 Sum_probs=17.7
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+.+.+++|.+|+|||++...
T Consensus 23 G~i~~i~G~~GsGKt~~~~~ 42 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQ 42 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHH
T ss_pred CEEEEEEECCCCCHHHHHHH
T ss_conf 83999997999889999999
No 286
>>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A (A:655-778,A:874-986)
Probab=66.62 E-value=1.5 Score=23.31 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=38.0
Q ss_pred HHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEE
Q ss_conf 04441858899999742324566620001256531210010500156831538999999988198099981
Q gi|254780826|r 347 PVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLVN 417 (509)
Q Consensus 347 pvsklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~~i~~~~~~vyLvN 417 (509)
....||..|..--.+.- +-+.+|.-.+ +-+|+--+.|.-- ..+.+.+++.+..|-+|-
T Consensus 149 ~~~~LSGGqkQRvaiAR---------Al~~~P~ill---lDEPts~LD~~~~-~~i~~~l~~~~~Tvi~vt 206 (237)
T 2iw3_A 149 RIRGLSGGQKVKLVLAA---------GTWQRPHLIV---LDEPTNYLDRDSL-GALSKALKEFEGGVIIIT 206 (237)
T ss_dssp CGGGCCHHHHHHHHHHH---------HHTTCCSEEE---EECGGGTCCHHHH-HHHHHHHHSCSSEEEEEC
T ss_pred CCCCCCHHHHHHHHHHH---------HHHHCCCEEE---EECCCCCCCHHHH-HHHHHHHHHCCCEEEEEE
T ss_conf 86768999999999999---------9986889999---9598631269999-999999982299799997
No 287
>>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (B:1-148,B:349-443)
Probab=66.62 E-value=2 Score=22.38 Aligned_cols=18 Identities=39% Similarity=0.311 Sum_probs=15.3
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
...+..|.-||||||+-+
T Consensus 17 ~~~lI~G~pGTGKT~tl~ 34 (243)
T 1w36_B 17 GERLIEASAGTGKTFTIA 34 (243)
T ss_dssp SCEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCHHHHHHH
T ss_conf 997999937304889999
No 288
>>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} (A:)
Probab=66.61 E-value=2.1 Score=22.31 Aligned_cols=18 Identities=22% Similarity=0.421 Sum_probs=15.5
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
--.++.|.+|.|||||-.
T Consensus 24 ~KIvlvG~~~vGKTSli~ 41 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVC 41 (192)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
T ss_conf 799999979919999999
No 289
>>2dpx_A GTP-binding protein RAD; GTPase, small-G, RGK, signal transduction, diabetes, signaling protein; HET: GDP; 1.80A {Homo sapiens} PDB: 2gjs_A* (A:)
Probab=66.61 E-value=2.1 Score=22.24 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=16.4
Q ss_pred CCCEEEEEEECCCCCCCCCCC
Q ss_conf 787027998335431112224
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~ 236 (509)
+..--.++.|.+|+|||||-.
T Consensus 5 ~~~~ki~iiG~~~~GKTsli~ 25 (174)
T 2dpx_A 5 ESVYKVLLLGAPGVGKSALAR 25 (174)
T ss_dssp -CEEEEEEECCTTSSHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHH
T ss_conf 756689999979939899999
No 290
>>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} (A:159-342)
Probab=66.50 E-value=1.8 Score=22.62 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=14.3
Q ss_pred EEEEECCCCCCCCCCCC
Q ss_conf 79983354311122247
Q gi|254780826|r 221 ALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 221 alfFGLSGTGKTTLS~d 237 (509)
.+|+|.+|+|||||--.
T Consensus 3 V~iiG~~nvGKSSLin~ 19 (184)
T 1lnz_A 3 VGLVGFPSVGKSTLLSV 19 (184)
T ss_dssp EEEESSTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHH
T ss_conf 79998668984489999
No 291
>>2pze_A Cystic fibrosis transmembrane conductance regulator; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A (A:)
Probab=66.37 E-value=2.1 Score=22.18 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=15.9
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+....+.|.||.|||||-.
T Consensus 34 Ge~~aiiG~nGaGKSTLlk 52 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLM 52 (229)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHH
T ss_conf 9999999999887999999
No 292
>>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* (A:1-158)
Probab=66.10 E-value=6.6 Score=18.97 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=16.3
Q ss_pred CCEEEEEEECCCCCCCCCCC
Q ss_conf 87027998335431112224
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~ 236 (509)
..-..+++|.++.||+||--
T Consensus 98 ~~~~i~iiG~pNvGKSTLiN 117 (158)
T 3cnl_A 98 RLARVLIVGVPNTGKSTIIN 117 (158)
T ss_dssp TTCEEEEEESTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
T ss_conf 66589996676614999999
No 293
>>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A (A:1-173)
Probab=65.97 E-value=2 Score=22.41 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=15.7
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-..++.|.+|.|||||.-.
T Consensus 6 ~ki~iiG~~~vGKTsLi~~ 24 (173)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNA 24 (173)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 3899999999989999999
No 294
>>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* (A:172-364)
Probab=65.82 E-value=2.2 Score=22.11 Aligned_cols=19 Identities=32% Similarity=0.371 Sum_probs=16.0
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-..+|+|.+|.|||||.-.
T Consensus 9 ~~V~iiG~~~vGKSsLln~ 27 (193)
T 2qtf_A 9 PSIGIVGYTNSGKTSLFNS 27 (193)
T ss_dssp CEEEEECBTTSSHHHHHHH
T ss_pred CEEEEEECCCCHHHHHHHH
T ss_conf 6699983454014189999
No 295
>>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} (A:)
Probab=65.75 E-value=2 Score=22.36 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=15.2
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
--.+++|.+|+|||||-.
T Consensus 7 ~Ki~iiG~~~vGKTsli~ 24 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMW 24 (170)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
T ss_conf 799999989959999999
No 296
>>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} (A:)
Probab=65.50 E-value=2.5 Score=21.76 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=20.0
Q ss_pred EECCCCCCCC--CCEEEEEEECCCCCCCCCCCC
Q ss_conf 3124534777--870279983354311122247
Q gi|254780826|r 207 MHCSINMDKE--KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 207 mHcsan~~~~--~~d~alfFGLSGTGKTTLS~d 237 (509)
|+.+.+...+ ..--.++.|.+|.|||+|-..
T Consensus 1 M~s~~~~~~~~~~~~KivlvG~~~vGKTsli~r 33 (206)
T 2bov_A 1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQ 33 (206)
T ss_dssp ----------CCCEEEEEEECSTTSSHHHHHHH
T ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHH
T ss_conf 998999999876326999999699498999999
No 297
>>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell cycle, hydrolase, membrane metal-binding, metalloprotease; 3.30A {Helicobacter pylori} PDB: 2r65_A* (A:1-184)
Probab=65.34 E-value=0.92 Score=24.62 Aligned_cols=47 Identities=26% Similarity=0.328 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 88778999999862410787993124534777870279983354311122247
Q gi|254780826|r 185 GEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 185 GEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d 237 (509)
.++|+-+-.++-++....-.. +.+..-....|++|.+|||||.+...
T Consensus 17 ~~~k~~l~~~~~~~~~~~~~~------~~~~~~~~giLl~GppGtGKT~la~a 63 (184)
T 2r62_A 17 EEAKEEVVEIVDFLKYPERYA------NLGAKIPKGVLLVGPPGTGKTLLAKA 63 (184)
T ss_dssp TTTHHHHHHHHHHHHCHHHHH------HHSCCCCSCCCCBCSSCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHH------HCCCCCCCEEEEECCCCCCCHHHHHH
T ss_conf 999999999999987999999------76999997358768999870169999
No 298
>>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} (A:)
Probab=65.33 E-value=2.3 Score=21.99 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=15.6
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
-..++.|.+|+|||||..
T Consensus 24 ~~I~iiG~~~vGKSSL~n 41 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFIN 41 (195)
T ss_dssp CEEEEEEBTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
T ss_conf 899999999987999999
No 299
>>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} (C:)
Probab=65.10 E-value=2.3 Score=22.02 Aligned_cols=18 Identities=39% Similarity=0.451 Sum_probs=15.5
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
-+.++.|-+|+|||||--
T Consensus 32 ~~I~ivG~~g~GKSTliN 49 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLIN 49 (418)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
T ss_conf 399998899893999999
No 300
>>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} (A:)
Probab=64.69 E-value=2.3 Score=22.03 Aligned_cols=20 Identities=40% Similarity=0.576 Sum_probs=16.2
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
.--.++.|.+|+|||||-..
T Consensus 25 ~~Ki~ivG~~~vGKTsli~r 44 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHM 44 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
T ss_conf 64799999999988999999
No 301
>>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} (A:147-418)
Probab=64.03 E-value=2.5 Score=21.79 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=16.1
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-..+|-|..|+|||||-..
T Consensus 22 g~ili~G~tGsGKTtl~~a 40 (272)
T 1p9r_A 22 GIILVTGPTGSGKSTTLYA 40 (272)
T ss_dssp EEEEEECSTTSCHHHHHHH
T ss_pred CEEEEECCCCCCCCHHHHH
T ss_conf 7799967898864268998
No 302
>>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding site, hydrolase; 3.20A {Spinacia oleracea} (B:97-377)
Probab=63.64 E-value=2.1 Score=22.26 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=17.0
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
...++||-+|+|||||..+
T Consensus 70 Qr~~I~~~~g~GKt~l~~~ 88 (281)
T 1fx0_B 70 GKIGLFGGAGVGKTVLIME 88 (281)
T ss_dssp CCEEEEECSSSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 4565335777642089999
No 303
>>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* (A:)
Probab=63.27 E-value=2.4 Score=21.86 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=14.9
Q ss_pred EEEEEECCCCCCCCCCC
Q ss_conf 27998335431112224
Q gi|254780826|r 220 VALFFGLSGTGKTTLSA 236 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~ 236 (509)
-.++.|.+|+|||||-.
T Consensus 23 ki~ivG~~~vGKTsll~ 39 (190)
T 3con_A 23 KLVVVGAGGVGKSALTI 39 (190)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
T ss_conf 99999969929899999
No 304
>>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics, NPPSFA; HET: GDP; 1.96A {Thermus thermophilus HB8} (A:)
Probab=63.00 E-value=2.4 Score=21.81 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=15.0
Q ss_pred EEEEEECCCCCCCCCCCC
Q ss_conf 279983354311122247
Q gi|254780826|r 220 VALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d 237 (509)
..+++|.+|.|||||...
T Consensus 3 kI~ivG~~~vGKSSLin~ 20 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNR 20 (161)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
T ss_conf 999999999849999999
No 305
>>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} (A:)
Probab=62.89 E-value=2.7 Score=21.56 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=15.1
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
-..++.|.+|.|||||-.
T Consensus 5 ~kI~iiG~~~vGKSsLin 22 (172)
T 2gj8_A 5 XKVVIAGRPNAGKSSLLN 22 (172)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
T ss_conf 689999999998999999
No 306
>>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} (A:540-757)
Probab=62.87 E-value=2.1 Score=22.29 Aligned_cols=20 Identities=40% Similarity=0.632 Sum_probs=16.2
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
.-+.+|.|-+|||||.+..-
T Consensus 49 ~~~il~~G~~GtGKt~lAr~ 68 (218)
T 1qvr_A 49 IGSFLFLGPTGVGKTELAKT 68 (218)
T ss_dssp SEEEEEBSCSSSSHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
T ss_conf 65899877887337999999
No 307
>>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin protein ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} (B:97-312)
Probab=62.81 E-value=3.5 Score=20.80 Aligned_cols=56 Identities=14% Similarity=0.108 Sum_probs=31.9
Q ss_pred EEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 664136788877899999986241078799312453477787027998335431112224
Q gi|254780826|r 177 LIGGTSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 177 lI~GT~YaGEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
.+.|... +|.+.+++..++.. ....|.-+..+......--.++.|..|.|||||-.
T Consensus 9 ~~~g~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ki~ivG~~~vGKTSLi~ 64 (216)
T 3l2o_B 9 AMFGPGL-EELNTSLVLSLMSS---EELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILI 64 (216)
T ss_dssp EEECTHH-HHSSSCHHHHHTTC---GGGCCEECCSTTTCSSSCCCEEEEETTTEEEEEEE
T ss_pred EEECCCC-CCCCHHHHHHHHCC---CCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEE
T ss_conf 8866985-75547999998628---97442047775322577764699978975699888
No 308
>>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} (A:69-265)
Probab=62.71 E-value=2.7 Score=21.52 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=13.5
Q ss_pred EEEEECCCCCCCCCC
Q ss_conf 799833543111222
Q gi|254780826|r 221 ALFFGLSGTGKTTLS 235 (509)
Q Consensus 221 alfFGLSGTGKTTLS 235 (509)
.++.|.+|.|||||-
T Consensus 4 I~lvG~~~~GKSsLi 18 (197)
T 1tq4_A 4 VAVTGETGSGKSSFI 18 (197)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
T ss_conf 999789998689999
No 309
>>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} (B:40-427)
Probab=62.63 E-value=2.9 Score=21.33 Aligned_cols=17 Identities=41% Similarity=0.530 Sum_probs=14.5
Q ss_pred EEEEEECCCCCCCCCCC
Q ss_conf 27998335431112224
Q gi|254780826|r 220 VALFFGLSGTGKTTLSA 236 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~ 236 (509)
..++.|-+|+|||||--
T Consensus 5 ~I~ivG~~g~GKStliN 21 (388)
T 2qag_B 5 NILCVGETGLGKSTLMD 21 (388)
T ss_dssp EEEEECSTTSSSHHHHH
T ss_pred EEEEECCCCCCHHHHHH
T ss_conf 99998899997999999
No 310
>>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} (A:65-322)
Probab=62.56 E-value=3.2 Score=20.99 Aligned_cols=45 Identities=7% Similarity=-0.212 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 153899999998819809998167468876887320788999999
Q gi|254780826|r 396 VQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALL 440 (509)
Q Consensus 396 ~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii 440 (509)
......|....+++++.++++|---.......+++..+.....+-
T Consensus 171 ~~~~~~L~~la~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (258)
T 2i1q_A 171 GRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQAIGGHIVG 215 (258)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECEECC-------CCEESSHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEE
T ss_conf 888888876654046238984346741566578763225865074
No 311
>>1wf3_A GTP-binding protein; GTPase, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus HB8} (A:1-179)
Probab=62.47 E-value=2.7 Score=21.50 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=15.9
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-..++.|.+|.|||||-..
T Consensus 8 ~~i~ivG~~nvGKSsLin~ 26 (179)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNN 26 (179)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 6899997999879999999
No 312
>>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} (A:1-181)
Probab=62.37 E-value=2.8 Score=21.45 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=15.5
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
-..+++|.++.|||||-.
T Consensus 9 ~~i~iiG~~nvGKSSLin 26 (181)
T 1ega_A 9 GFIAIVGRPNVGKSTLLN 26 (181)
T ss_dssp EEEEEECSSSSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
T ss_conf 489999899982999999
No 313
>>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} (A:)
Probab=62.18 E-value=2.8 Score=21.42 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=15.6
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
--.++.|.+|.|||+|-.
T Consensus 26 ~KivivGd~~VGKTsLi~ 43 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLI 43 (207)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
T ss_conf 089999989988999999
No 314
>>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} (A:)
Probab=62.01 E-value=2.6 Score=21.62 Aligned_cols=18 Identities=39% Similarity=0.571 Sum_probs=15.2
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
--.++.|.+|+|||||-.
T Consensus 24 ~ki~iiG~~~vGKTsLi~ 41 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAG 41 (195)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
T ss_conf 799999989959999999
No 315
>>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10} (A:620-714,A:864-972)
Probab=61.97 E-value=1.8 Score=22.62 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=16.6
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
.-++|=|+||+||++|-.|
T Consensus 32 ~~~~~tg~sgsgksslvfD 50 (204)
T 2r6f_A 32 TFVAVTGVSGSGKSTLVNE 50 (204)
T ss_dssp SEEECCBCTTSSHHHHHTT
T ss_pred CEEEEEEECCCCCCCHHHH
T ss_conf 4565554147875320255
No 316
>>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} (A:)
Probab=61.93 E-value=2.6 Score=21.61 Aligned_cols=18 Identities=28% Similarity=0.250 Sum_probs=15.2
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
--.++.|.+|.|||+|-.
T Consensus 6 ~kiviiG~~~vGKTSli~ 23 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLI 23 (186)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
T ss_conf 999999989979899999
No 317
>>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} (A:255-525)
Probab=61.79 E-value=3.1 Score=21.12 Aligned_cols=20 Identities=40% Similarity=0.599 Sum_probs=17.6
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+...+++|.+|+|||+|...
T Consensus 27 G~~~~i~G~pGsGKT~l~~q 46 (271)
T 1tf7_A 27 DSIILATGATGTGKTLLVSR 46 (271)
T ss_dssp SCEEEEEECTTSSHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHH
T ss_conf 65999946887669999999
No 318
>>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, signaling protein; 2.90A {Chlorobaculum tepidum} (A:37-213)
Probab=61.77 E-value=2.6 Score=21.66 Aligned_cols=18 Identities=28% Similarity=0.207 Sum_probs=15.3
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
--.+++|.+|.|||||-.
T Consensus 6 ~ki~i~G~~~vGKTsLi~ 23 (177)
T 3dpu_A 6 IKVHLIGDGMAGKTSLLK 23 (177)
T ss_dssp EEEEEESSSCSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
T ss_conf 679999938987999999
No 319
>>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} (A:)
Probab=61.62 E-value=3.4 Score=20.87 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=16.8
Q ss_pred CCCEEEEEEECCCCCCCCCCC
Q ss_conf 787027998335431112224
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~ 236 (509)
...-..++.|.+|+|||||-.
T Consensus 46 ~~~~ki~ivG~~~vGKTsLl~ 66 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLT 66 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
T ss_conf 656289998989997488999
No 320
>>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} (A:)
Probab=61.50 E-value=2.7 Score=21.52 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=15.7
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
--.++.|++|+|||+|-..
T Consensus 7 ~ki~ivG~~~vGKTSli~r 25 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLR 25 (170)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 7899999999498999999
No 321
>>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} (A:)
Probab=61.40 E-value=2.7 Score=21.51 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=15.9
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-..+|+|.+|.|||||-..
T Consensus 8 ~kv~iiG~~~vGKSsLi~~ 26 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNA 26 (188)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 5899999999879999999
No 322
>>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} (A:)
Probab=61.29 E-value=3 Score=21.25 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=16.1
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
--.++.|.+|+|||+|-..
T Consensus 17 ~KivlvG~~~vGKTsli~r 35 (211)
T 3bbp_A 17 FKLVFLGEQSVGKTSLITR 35 (211)
T ss_dssp CEEEEEESTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 8999999899799999999
No 323
>>2wjy_A Regulator of nonsense transcripts 1; alternative splicing, nonsense mediated decay, zinc-finger, ATP-binding, polymorphism, metal-binding, UPF2; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A (A:322-584)
Probab=61.25 E-value=3.3 Score=20.92 Aligned_cols=17 Identities=47% Similarity=0.620 Sum_probs=12.5
Q ss_pred EEEEEEECCCCCCCCCC
Q ss_conf 02799833543111222
Q gi|254780826|r 219 DVALFFGLSGTGKTTLS 235 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS 235 (509)
..++..|.-|||||+..
T Consensus 51 ~~~lIqGPPGTGKT~ti 67 (263)
T 2wjy_A 51 PLSLIQGPPGTGKTVTS 67 (263)
T ss_dssp SEEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCCHHHHH
T ss_conf 95799889998688999
No 324
>>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* (A:)
Probab=61.24 E-value=2.7 Score=21.48 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=15.2
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
--.++.|++|+|||||-.
T Consensus 7 ~ki~iiG~~~vGKSsll~ 24 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTT 24 (178)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
T ss_conf 899999959939999999
No 325
>>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A (A:146-408)
Probab=61.10 E-value=3.3 Score=20.92 Aligned_cols=17 Identities=47% Similarity=0.620 Sum_probs=12.2
Q ss_pred EEEEEEECCCCCCCCCC
Q ss_conf 02799833543111222
Q gi|254780826|r 219 DVALFFGLSGTGKTTLS 235 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS 235 (509)
..++..|.-|||||+..
T Consensus 51 ~~~lIqGPPGTGKT~ti 67 (263)
T 2gk6_A 51 PLSLIQGPPGTGKTVTS 67 (263)
T ss_dssp SEEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCCHHHHH
T ss_conf 95598779998889999
No 326
>>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A* (A:)
Probab=61.06 E-value=4.3 Score=20.17 Aligned_cols=35 Identities=26% Similarity=0.217 Sum_probs=22.9
Q ss_pred CCCEEEEEEECCCCCCCCCCCC--------CCCEEEECCCEEE
Q ss_conf 7870279983354311122247--------8861330311021
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSAS--------VDRFLIGDDEHGW 250 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d--------~~r~LigDDehgW 250 (509)
....++++=|=-|+||||+|+. ..|.|+-|....-
T Consensus 14 ~~~vIav~s~KGGVGKTT~a~nLA~~La~~g~kVlvid~D~~~ 56 (334)
T 3iqw_A 14 RSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAH 56 (334)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 7866999969997819999999999999689958999589998
No 327
>>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} (A:1-312)
Probab=61.01 E-value=3.3 Score=20.94 Aligned_cols=18 Identities=39% Similarity=0.416 Sum_probs=15.1
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
-..+++|.+|+|||||--
T Consensus 39 ~~I~ivG~~~~GKSsLiN 56 (312)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMN 56 (312)
T ss_dssp EEEEEEEBTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
T ss_conf 999877899997999999
No 328
>>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} (A:)
Probab=60.89 E-value=3 Score=21.18 Aligned_cols=18 Identities=39% Similarity=0.536 Sum_probs=15.1
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
-..+++|.+|+|||||-.
T Consensus 22 ~ki~iiG~~~~GKTSLi~ 39 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIIN 39 (190)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
T ss_conf 799999999989999999
No 329
>>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... (A:1-185)
Probab=60.55 E-value=4.7 Score=19.92 Aligned_cols=32 Identities=28% Similarity=0.320 Sum_probs=21.2
Q ss_pred EEECCCCCC-CCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 931245347-77870279983354311122247
Q gi|254780826|r 206 PMHCSINMD-KEKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 206 pmHcsan~~-~~~~d~alfFGLSGTGKTTLS~d 237 (509)
|+.++++.. .+..--.++.|.+|+|||||-..
T Consensus 2 ~~ms~~~~~~~~~~~ki~iiG~~~vGKTsLi~r 34 (185)
T 3gj0_A 2 PHMASAAQGEPQVQFKLVLVGDGGTGKTTFVKR 34 (185)
T ss_dssp ----CCSTTCCCCEEEEEEEECTTSSHHHHHTT
T ss_pred CCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
T ss_conf 986645568874167999999999799999999
No 330
>>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} (A:)
Probab=60.54 E-value=2.6 Score=21.63 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=14.9
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
--.+++|.+|+|||||-.
T Consensus 6 ~ki~iiG~~~vGKSsli~ 23 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQ 23 (168)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
T ss_conf 999999989929899999
No 331
>>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} (E:)
Probab=60.53 E-value=3.7 Score=20.58 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=25.8
Q ss_pred EEEEEECCCCCCCCCCCC--------CCCEEEECCCE-EECCCCCCCCC
Q ss_conf 279983354311122247--------88613303110-21567412345
Q gi|254780826|r 220 VALFFGLSGTGKTTLSAS--------VDRFLIGDDEH-GWSKEGVFNFE 259 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d--------~~r~LigDDeh-gW~d~gvfn~E 259 (509)
+.+|=|=-|+||||+++. ..|.|+-|+.. +.+-...++.+
T Consensus 4 Iiv~s~KGGVGKTT~a~nLA~~la~~G~rvlliD~D~~~~~~~~~~~~~ 52 (289)
T 2afh_E 4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSK 52 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCC
T ss_conf 8999899988899999999999998899889995289997113433998
No 332
>>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold, motor, ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A (A:142-422)
Probab=60.34 E-value=3.5 Score=20.75 Aligned_cols=19 Identities=26% Similarity=0.308 Sum_probs=16.9
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
--.++||-+|+|||||..+
T Consensus 34 Qr~~I~~~~g~GKt~ll~~ 52 (281)
T 3ice_A 34 QRGLIVAPPKAGKTXLLQN 52 (281)
T ss_dssp CEEEEECCSSSSHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHH
T ss_conf 8068854898748899999
No 333
>>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis, plasmid; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A (A:1-125)
Probab=60.33 E-value=2.9 Score=21.29 Aligned_cols=18 Identities=28% Similarity=0.593 Sum_probs=14.3
Q ss_pred EEEEEECCCCCCCCCCCC
Q ss_conf 279983354311122247
Q gi|254780826|r 220 VALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d 237 (509)
..++-|.||.|||||...
T Consensus 3 ~ivi~GpsgsGKt~la~~ 20 (125)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQ 20 (125)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
T ss_conf 999979886478999999
No 334
>>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} (A:)
Probab=60.28 E-value=2.9 Score=21.30 Aligned_cols=17 Identities=35% Similarity=0.608 Sum_probs=14.6
Q ss_pred EEEEEECCCCCCCCCCC
Q ss_conf 27998335431112224
Q gi|254780826|r 220 VALFFGLSGTGKTTLSA 236 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~ 236 (509)
-.++.|.+|.|||+|-.
T Consensus 5 KiviiGd~~vGKTsli~ 21 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVL 21 (172)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
T ss_conf 89999979979999999
No 335
>>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} (A:1-173)
Probab=60.26 E-value=3.1 Score=21.09 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=14.3
Q ss_pred EEEEEECCCCCCCCCCC
Q ss_conf 27998335431112224
Q gi|254780826|r 220 VALFFGLSGTGKTTLSA 236 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~ 236 (509)
..++.|.+|.|||||-.
T Consensus 3 ~V~iiG~~~~GKSSli~ 19 (173)
T 1mky_A 3 TVLIVGRPNVGKSTLFN 19 (173)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCHHHHHHH
T ss_conf 89998999962999999
No 336
>>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} (A:)
Probab=60.15 E-value=3.2 Score=21.04 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=16.6
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
.-..++.|.+|.|||||-..
T Consensus 26 ~~kI~iiG~~~vGKSSLi~~ 45 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNT 45 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHH
T ss_conf 97899999999989999999
No 337
>>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP binding protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} (A:)
Probab=60.01 E-value=3 Score=21.25 Aligned_cols=17 Identities=35% Similarity=0.657 Sum_probs=14.5
Q ss_pred EEEEEECCCCCCCCCCC
Q ss_conf 27998335431112224
Q gi|254780826|r 220 VALFFGLSGTGKTTLSA 236 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~ 236 (509)
-.++.|++|+|||||-.
T Consensus 6 ki~iiG~~~~GKTSLi~ 22 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLAS 22 (175)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
T ss_conf 99999979959999999
No 338
>>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (D:111-360,D:596-608)
Probab=59.99 E-value=3.4 Score=20.82 Aligned_cols=19 Identities=42% Similarity=0.543 Sum_probs=15.3
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
.+..++-|.-|||||++..
T Consensus 54 ~~~~lI~GppGTGKT~~l~ 72 (263)
T 1w36_D 54 RRISVISGGPGTGKTTTVA 72 (263)
T ss_dssp BSEEEEECCTTSTHHHHHH
T ss_pred CCEEEEECCCCCCCCCHHH
T ss_conf 7907984699986403299
No 339
>>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} (A:)
Probab=59.58 E-value=3.1 Score=21.15 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=16.0
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-+..+-|.+|+||||+...
T Consensus 8 ~~I~ieG~~GsGKTTl~~~ 26 (334)
T 1p6x_A 8 VRIYLDGVYGIGKSTTGRV 26 (334)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 8999988877889999999
No 340
>>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors; HET: GTP; 1.90A {Homo sapiens} (A:)
Probab=59.46 E-value=3.1 Score=21.15 Aligned_cols=18 Identities=28% Similarity=0.560 Sum_probs=14.9
Q ss_pred EEEEEECCCCCCCCCCCC
Q ss_conf 279983354311122247
Q gi|254780826|r 220 VALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d 237 (509)
-.++.|.+|.|||+|-..
T Consensus 5 KivlvGd~~vGKTsLi~r 22 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQ 22 (167)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
T ss_conf 999999899899999999
No 341
>>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* (A:)
Probab=59.45 E-value=3.6 Score=20.71 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=15.1
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
-..+++|.+|.|||||--
T Consensus 37 ~~v~ivG~~~~GKSSLin 54 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVN 54 (262)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
T ss_conf 389998999987999999
No 342
>>2ck3_D ATP synthase beta chain; ATP phosphorylase, ATP phosphorylase (H+ transporting), F1FO ATP synthase, F1-ATPase, hydrolase, ATP synthesis; HET: ANP ADP; 1.9A {Bos taurus} (D:85-364)
Probab=59.26 E-value=3 Score=21.25 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=16.8
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
.-.++||-||+|||||..+
T Consensus 70 QR~~Ifa~~g~GKt~l~~~ 88 (280)
T 2ck3_D 70 GKIGLFGGAGVGKTVLIME 88 (280)
T ss_dssp CEEEEEECTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 7767556899888999999
No 343
>>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} (A:1-123,A:293-359)
Probab=59.14 E-value=3.8 Score=20.51 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=18.9
Q ss_pred ECCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 12453477787027998335431112224
Q gi|254780826|r 208 HCSINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 208 Hcsan~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
|..+.+.-. ....+|.|..|+|||+|-.
T Consensus 17 ~~~~~i~f~-~gln~i~G~NGsGKSnile 44 (190)
T 2o5v_A 17 LAPGTLNFP-EGVTGIYGENGAGKTNLLE 44 (190)
T ss_dssp CCSEEEECC-SEEEEEECCTTSSHHHHHH
T ss_pred CCCCEEECC-CCEEEEECCCCCCHHHHHH
T ss_conf 533289769-9808999999871999999
No 344
>>1yzq_A Small GTP binding protein RAB6 isoform; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.78A {Homo sapiens} (A:)
Probab=59.11 E-value=3.4 Score=20.85 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=15.9
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
--.++.|.+|.|||+|-..
T Consensus 7 ~KiviiG~~gvGKTsll~r 25 (170)
T 1yzq_A 7 FKLVFLGEQSVGKTSLITR 25 (170)
T ss_dssp CEEEEEESTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 8999999499899999999
No 345
>>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} (A:)
Probab=58.71 E-value=3.5 Score=20.78 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=15.3
Q ss_pred EEEEEECCCCCCCCCCC
Q ss_conf 27998335431112224
Q gi|254780826|r 220 VALFFGLSGTGKTTLSA 236 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~ 236 (509)
-.++.|.+|.|||+|-.
T Consensus 20 KvviiG~~~VGKTSLi~ 36 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLM 36 (194)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
T ss_conf 99999999979899999
No 346
>>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} (A:100-285)
Probab=58.54 E-value=4.9 Score=19.81 Aligned_cols=50 Identities=18% Similarity=0.014 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 156831538999999988198099981674688768873207889999999998496024
Q gi|254780826|r 391 MPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKS 450 (509)
Q Consensus 391 ~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~~ 450 (509)
+|+.+.-..-+=.+.++.-+-..+||||| |=++=.+.+++++..+|.+..
T Consensus 105 ~plt~~t~~li~~~~l~~mk~~a~lIN~~----------RG~ivd~~AL~~aL~~g~i~g 154 (186)
T 2ekl_A 105 VTVSKDAKPIIDYPQFELMKDNVIIVNTS----------RAVAVNGKALLDYIKKGKVYA 154 (186)
T ss_dssp CCCCTTSCCSBCHHHHHHSCTTEEEEESS----------CGGGBCHHHHHHHHHTTCEEE
T ss_pred CCCCCCCCCEECHHHHHCCCCCHHHCCCC----------CHHHHHHHHHHHHHHCCCEEE
T ss_conf 23233542124766763237720300356----------322220177888886296748
No 347
>>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} (A:)
Probab=58.45 E-value=4.1 Score=20.29 Aligned_cols=19 Identities=32% Similarity=0.267 Sum_probs=16.3
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-...+-|..|+|||||+..
T Consensus 13 ~~I~ieG~~GsGKSTl~~~ 31 (341)
T 1osn_A 13 LRIYLDGAYGIGKTTAAEE 31 (341)
T ss_dssp EEEEEEESSSSCTTHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 6999989867789999999
No 348
>>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} (A:1-138)
Probab=58.41 E-value=4.2 Score=20.26 Aligned_cols=18 Identities=39% Similarity=0.763 Sum_probs=14.3
Q ss_pred CEEEEEEECCCCCCCCCC
Q ss_conf 702799833543111222
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS 235 (509)
....++.|.-|+||||+-
T Consensus 23 ~~l~vi~G~Ng~GKStil 40 (138)
T 1f2t_A 23 EGINLIIGQNGSGKSSLL 40 (138)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCCHHHH
T ss_conf 982999988988800699
No 349
>>1ii8_A RAD50 ABC-ATPase; MRE11, DNA double-strand break repair, replication; 3.02A {Pyrococcus furiosus} (A:1-138)
Probab=58.41 E-value=4.2 Score=20.26 Aligned_cols=18 Identities=39% Similarity=0.763 Sum_probs=14.1
Q ss_pred CEEEEEEECCCCCCCCCC
Q ss_conf 702799833543111222
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS 235 (509)
....++.|.-|+||||+-
T Consensus 23 ~~l~vi~G~Ng~GKStil 40 (138)
T 1ii8_A 23 EGINLIIGQNGSGKSSLL 40 (138)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCCCHHH
T ss_conf 993899888999831198
No 350
>>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Pyrococcus horikoshii OT3} (A:)
Probab=58.18 E-value=4.5 Score=20.07 Aligned_cols=21 Identities=0% Similarity=-0.153 Sum_probs=17.8
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
.+.+.++.|-+|+|||++...
T Consensus 20 ~G~i~~i~G~~g~GKT~~~~~ 40 (260)
T 3bs4_A 20 HSLILIHEEDASSRGKDILFY 40 (260)
T ss_dssp TCEEEEEECSGGGCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
T ss_conf 983999982899998999999
No 351
>>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii} (A:)
Probab=58.16 E-value=3 Score=21.20 Aligned_cols=40 Identities=30% Similarity=0.385 Sum_probs=24.9
Q ss_pred EEEEEE-ECCCCCCCCCCCC----------CCCEEEECCCEEECCCCCCCC
Q ss_conf 027998-3354311122247----------886133031102156741234
Q gi|254780826|r 219 DVALFF-GLSGTGKTTLSAS----------VDRFLIGDDEHGWSKEGVFNF 258 (509)
Q Consensus 219 d~alfF-GLSGTGKTTLS~d----------~~r~LigDDehgW~d~gvfn~ 258 (509)
.+.+|+ |=-|+||||+|+. ..|.|+-|+...-+-.-+|+.
T Consensus 18 ~vI~v~s~KGGVGKTT~a~nLA~a~~La~~G~rVLlvd~Dpq~~l~~~l~~ 68 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLSDAFCQ 68 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCHHHHHHTS
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCC
T ss_conf 469999699956299999999999999858990899957999876887198
No 352
>>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} (A:)
Probab=58.15 E-value=2.4 Score=21.83 Aligned_cols=36 Identities=28% Similarity=0.291 Sum_probs=23.5
Q ss_pred EEEEE-ECCCCCCCCCCCC--------CCCEEEECCCEEECCCCC
Q ss_conf 27998-3354311122247--------886133031102156741
Q gi|254780826|r 220 VALFF-GLSGTGKTTLSAS--------VDRFLIGDDEHGWSKEGV 255 (509)
Q Consensus 220 ~alfF-GLSGTGKTTLS~d--------~~r~LigDDehgW~d~gv 255 (509)
+..|+ +=-|+||||+++. ..+.|+-|+...-+....
T Consensus 4 vI~v~s~KGGvGKTT~a~nlA~~La~~g~kvlliD~D~q~~~~~~ 48 (263)
T 1hyq_A 4 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLEL 48 (263)
T ss_dssp EEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
T ss_conf 999989999885999999999999968998999968899897789
No 353
>>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; HET: ATP; 2.20A {Chlorobium tepidum tls} (A:)
Probab=58.14 E-value=4.6 Score=20.00 Aligned_cols=33 Identities=21% Similarity=0.201 Sum_probs=21.4
Q ss_pred EEEEEEECC-CCCCCCCCCC--------C-CCEEEECCCEEEC
Q ss_conf 027998335-4311122247--------8-8613303110215
Q gi|254780826|r 219 DVALFFGLS-GTGKTTLSAS--------V-DRFLIGDDEHGWS 251 (509)
Q Consensus 219 d~alfFGLS-GTGKTTLS~d--------~-~r~LigDDehgW~ 251 (509)
.+..|.+.. |+||||+++. . .+.|+.||....+
T Consensus 5 kvI~v~s~KGGvGKTT~a~~LA~~La~~g~~~vllid~d~~~~ 47 (245)
T 3ea0_A 5 RVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFG 47 (245)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 7999989999665999999999999985899899997989989
No 354
>>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GDP-binding; HET: GDP NAD; 1.73A {Homo sapiens} (A:)
Probab=58.04 E-value=3.7 Score=20.59 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=21.0
Q ss_pred EEEECCCCCC--CCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 9931245347--77870279983354311122247
Q gi|254780826|r 205 MPMHCSINMD--KEKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 205 lpmHcsan~~--~~~~d~alfFGLSGTGKTTLS~d 237 (509)
-+|-++.+.. ....--.++.|.+|.|||+|-..
T Consensus 3 ~~m~~~~~~~~~~~~~~KIvivGd~~vGKTSLl~r 37 (187)
T 2a9k_A 3 PGISGGGGGSQNSLALHKVIMVGSGGVGKSALTLQ 37 (187)
T ss_dssp --------------CEEEEEEECSTTSSHHHHHHH
T ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHH
T ss_conf 86556555688866303999999799688999999
No 355
>>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* (A:)
Probab=58.03 E-value=4.2 Score=20.23 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=16.8
Q ss_pred CCCCEEEEEEECCCCCCCCCCC
Q ss_conf 7787027998335431112224
Q gi|254780826|r 215 KEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 215 ~~~~d~alfFGLSGTGKTTLS~ 236 (509)
+...--.++.|.+|.|||+|-.
T Consensus 19 ~~~~~kivivG~~~vGKTsli~ 40 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLF 40 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHH
T ss_pred CCEEEEEEEECCCCCCHHHHHH
T ss_conf 8858899999999929899999
No 356
>>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} (A:1-168)
Probab=58.00 E-value=3.5 Score=20.79 Aligned_cols=19 Identities=42% Similarity=0.539 Sum_probs=16.5
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
...||.|..|||||++..-
T Consensus 47 ~~~Ll~GppG~GKT~~a~~ 65 (168)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALA 65 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 8798889799999999999
No 357
>>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} (A:103-299)
Probab=57.81 E-value=6.4 Score=19.06 Aligned_cols=49 Identities=29% Similarity=0.332 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 15683153899999998819809998167468876887320788999999999849602
Q gi|254780826|r 391 MPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIK 449 (509)
Q Consensus 391 ~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~ 449 (509)
+|+.|.-+.-+=.+.++.-+-..|||||| |=++=.+-++++|+-+|.|.
T Consensus 105 ~plt~~T~~li~~~~l~~mk~~a~lvN~~----------RG~iVd~~aL~~aL~~g~i~ 153 (197)
T 1j4a_A 105 VPDVPANVHMINDESIAKMKQDVVIVNVS----------RGPLVDTDAVIRGLDSGKIF 153 (197)
T ss_dssp SCCCGGGTTCBSHHHHHHSCTTEEEEECS----------CGGGBCHHHHHHHHHHTSEE
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEECC----------CCCCCCHHHHHHHHHCCCEE
T ss_conf 68984101221199984248996999804----------65435689999999759703
No 358
>>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} (A:64-267)
Probab=57.79 E-value=3.4 Score=20.85 Aligned_cols=69 Identities=17% Similarity=0.176 Sum_probs=35.2
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHC
Q ss_conf 702799833543111222478861330311021567412345553211013583335135887530110312
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLE 289 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d~~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailE 289 (509)
....++.|-+|||||||..-=. .++|+....-..+.-|.+. +++-|.+-+..|........ ..+-+++.
T Consensus 41 ~~~~~l~G~~gtGKStl~~~l~-~l~g~~~~~~~~~~~~~~~-~l~gk~i~i~de~~~~~~~~-~~lK~l~~ 109 (204)
T 1u0j_A 41 RNTIWLFGPATTGKTNIAEAIA-HTVPFYGCVNWTNENFPFN-DCVDKMVIWWEEGKMTAKVV-ESAKAILG 109 (204)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH-HHSSCEEECCTTCSSCTTG-GGSSCSEEEECSCCEETTTH-HHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HHHCCCCCCCCCCCCCCCC-CCCCCEEEEEECCCCCHHHH-HHHHHHCC
T ss_conf 4599998899887899999999-9807442013557887663-23698799995899732289-99998657
No 359
>>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} (A:)
Probab=57.73 E-value=4.4 Score=20.09 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=25.2
Q ss_pred EEEEEECCCCCCCCCCCC--------CCCE-EEECCCEEECCCCCCCCC
Q ss_conf 279983354311122247--------8861-330311021567412345
Q gi|254780826|r 220 VALFFGLSGTGKTTLSAS--------VDRF-LIGDDEHGWSKEGVFNFE 259 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d--------~~r~-LigDDehgW~d~gvfn~E 259 (509)
+..|-|-.|+||||+++. ..|. ||.-|-.+.+-...++.+
T Consensus 3 ii~~sgKGGvGKTT~a~~lA~~LA~~g~kVlliD~D~~~~~~~~~~~~~ 51 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGL 51 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCC
T ss_conf 9999899977699999999999997899689995889998314661887
No 360
>>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} (A:)
Probab=57.68 E-value=3.4 Score=20.83 Aligned_cols=17 Identities=18% Similarity=0.427 Sum_probs=14.6
Q ss_pred EEEEEECCCCCCCCCCC
Q ss_conf 27998335431112224
Q gi|254780826|r 220 VALFFGLSGTGKTTLSA 236 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~ 236 (509)
-.++.|.+|+|||||-.
T Consensus 5 ki~iiG~~~vGKTsLl~ 21 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVL 21 (170)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
T ss_conf 99999989919899999
No 361
>>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} (A:)
Probab=57.67 E-value=3.4 Score=20.83 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=15.1
Q ss_pred EEEEEECCCCCCCCCCCC
Q ss_conf 279983354311122247
Q gi|254780826|r 220 VALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d 237 (509)
-.+++|.+|+|||||-..
T Consensus 9 ki~ivG~~~vGKTsll~~ 26 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNR 26 (177)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
T ss_conf 999999899899999999
No 362
>>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} (A:)
Probab=57.62 E-value=5.1 Score=19.70 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=16.6
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
..--.++.|.+|.|||+|-..
T Consensus 8 ~~~KiviiGd~~vGKTsll~r 28 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQ 28 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
T ss_conf 745899999799398999999
No 363
>>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell membrane, GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* (A:1-172,A:259-274)
Probab=57.55 E-value=4 Score=20.36 Aligned_cols=17 Identities=35% Similarity=0.309 Sum_probs=14.7
Q ss_pred EEEEEEECCCCCCCCCC
Q ss_conf 02799833543111222
Q gi|254780826|r 219 DVALFFGLSGTGKTTLS 235 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS 235 (509)
-..++.|.+|.|||||-
T Consensus 4 ~~I~ivG~~~vGKSTLi 20 (188)
T 3i8s_A 4 LTIGLIGNPNSGKTTLF 20 (188)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
T ss_conf 88999989999799999
No 364
>>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} (A:)
Probab=57.49 E-value=3.5 Score=20.80 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=15.3
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
--.+++|.+|+|||||-.
T Consensus 22 ~ki~iiG~~~vGKTsli~ 39 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTV 39 (187)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
T ss_conf 999999969989999999
No 365
>>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} (A:)
Probab=57.41 E-value=3.8 Score=20.54 Aligned_cols=17 Identities=41% Similarity=0.563 Sum_probs=14.3
Q ss_pred EEEEEECCCCCCCCCCC
Q ss_conf 27998335431112224
Q gi|254780826|r 220 VALFFGLSGTGKTTLSA 236 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~ 236 (509)
-.+++|..|+|||||-.
T Consensus 5 ki~ivG~~~~GKTsli~ 21 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLV 21 (170)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
T ss_conf 99999999979999999
No 366
>>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} (A:1-167)
Probab=57.28 E-value=4 Score=20.36 Aligned_cols=18 Identities=28% Similarity=0.398 Sum_probs=15.5
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
-..++.|+++.|||||-.
T Consensus 4 ~~I~iiG~~nvGKSSLin 21 (167)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFN 21 (167)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
T ss_conf 999999899998999999
No 367
>>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C (D:)
Probab=57.22 E-value=4.3 Score=20.20 Aligned_cols=20 Identities=30% Similarity=0.159 Sum_probs=16.4
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
.--.++.|.+|.|||||-..
T Consensus 8 ~~kiviiG~~~vGKTsLi~r 27 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLIS 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
T ss_conf 16999999899899999999
No 368
>>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, non-SMC subunit, ABC-type ATPase, WHD, ATP; HET: ATG; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* (A:1-208,A:411-483)
Probab=57.22 E-value=4.2 Score=20.23 Aligned_cols=17 Identities=35% Similarity=0.380 Sum_probs=10.6
Q ss_pred EEEEEEECCCCCCCCCC
Q ss_conf 02799833543111222
Q gi|254780826|r 219 DVALFFGLSGTGKTTLS 235 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS 235 (509)
.+.++.|--|+||||+-
T Consensus 30 ~invIvG~NGsGKSTiL 46 (281)
T 3euj_A 30 LVTTLSGGNGAGKSTTM 46 (281)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
T ss_conf 80799899998799999
No 369
>>1m2o_B GTP binding, GTP-binding protein SAR1; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} (B:)
Probab=57.21 E-value=4.2 Score=20.26 Aligned_cols=19 Identities=47% Similarity=0.646 Sum_probs=16.0
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
--.++.|.+|.|||+|-..
T Consensus 24 ~ki~ivG~~~vGKTsLi~r 42 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHM 42 (190)
T ss_dssp CEEEEEESTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 2999999999988999999
No 370
>>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} (A:)
Probab=56.97 E-value=3.7 Score=20.60 Aligned_cols=18 Identities=33% Similarity=0.344 Sum_probs=15.3
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
--.+++|.+|+|||||-.
T Consensus 23 ~ki~ivG~~~vGKSsLi~ 40 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVN 40 (188)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
T ss_conf 699999999999899999
No 371
>>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, transit peptide, disease mutation, nucleotide-binding, ATP-binding; HET: GDP 2PE; 2.64A {Homo sapiens} (A:1-262)
Probab=56.89 E-value=5.6 Score=19.40 Aligned_cols=20 Identities=25% Similarity=0.205 Sum_probs=16.4
Q ss_pred CCEEEEEEECCCCCCCCCCC
Q ss_conf 87027998335431112224
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~ 236 (509)
+--+.+|-|.-|.||||+.+
T Consensus 73 ~~~v~~l~G~~GaGKTT~l~ 92 (262)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIE 92 (262)
T ss_dssp SCEEEEEECCTTSSHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
T ss_conf 72178630799888999999
No 372
>>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural genomics, NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii OT3} (A:163-357)
Probab=56.58 E-value=4 Score=20.42 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=15.5
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-..+++|.+|.|||||-..
T Consensus 6 ~~v~ivG~~~~GKSsLin~ 24 (195)
T 2e87_A 6 PTVVIAGHPNVGKSTLLKA 24 (195)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHH
T ss_conf 8799961788456289999
No 373
>>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell membrane, GTP-binding, ION transport; 2.50A {Legionella pneumophila} (A:1-169,A:253-256)
Probab=56.44 E-value=4 Score=20.37 Aligned_cols=17 Identities=47% Similarity=0.591 Sum_probs=14.3
Q ss_pred EEEEECCCCCCCCCCCC
Q ss_conf 79983354311122247
Q gi|254780826|r 221 ALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 221 alfFGLSGTGKTTLS~d 237 (509)
.++.|-+|.|||||-..
T Consensus 4 I~iiG~~~vGKTsL~~~ 20 (173)
T 3iby_A 4 ALLIGNPNCGKTTLFNA 20 (173)
T ss_dssp EEEEESTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
T ss_conf 99989999689999999
No 374
>>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} (A:)
Probab=56.43 E-value=3.7 Score=20.60 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=15.6
Q ss_pred EEEEEECCCCCCCCCCCC
Q ss_conf 279983354311122247
Q gi|254780826|r 220 VALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d 237 (509)
-.+++|.+|+|||||-..
T Consensus 22 ki~ivG~~~~GKSsli~~ 39 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHR 39 (184)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
T ss_conf 999999689888999999
No 375
>>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} (A:)
Probab=56.33 E-value=4.2 Score=20.25 Aligned_cols=19 Identities=37% Similarity=0.412 Sum_probs=16.1
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
--.++.|.+|.|||+|-..
T Consensus 26 ~KiviiGd~~vGKTSLi~r 44 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQ 44 (200)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 7999999989398999999
No 376
>>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} (B:)
Probab=56.08 E-value=4.8 Score=19.85 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=17.4
Q ss_pred CCCEEEEEEECCCCCCCCCCCC
Q ss_conf 7870279983354311122247
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d 237 (509)
...-..++.|.+|.|||||-..
T Consensus 10 ~~~~kv~iiG~~~vGKSSLi~~ 31 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTL 31 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
T ss_conf 8897899999999999999999
No 377
>>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe} (A:)
Probab=56.02 E-value=3.5 Score=20.75 Aligned_cols=43 Identities=28% Similarity=0.312 Sum_probs=29.7
Q ss_pred EEEEEE-ECCCCCCCCCCCC--------CCCEEEECCCEEECCCCCCCCCCC
Q ss_conf 027998-3354311122247--------886133031102156741234555
Q gi|254780826|r 219 DVALFF-GLSGTGKTTLSAS--------VDRFLIGDDEHGWSKEGVFNFEGG 261 (509)
Q Consensus 219 d~alfF-GLSGTGKTTLS~d--------~~r~LigDDehgW~d~gvfn~EgG 261 (509)
.+.+|+ |=-|+||||+++. ..|.|+-|....-+-...|..+..
T Consensus 19 ~vI~v~s~KGGVGKTTva~nLA~~LA~~G~rVlliD~D~~~~l~~~l~~~~~ 70 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHNLSDAFGTKFG 70 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTTCHHHHHHSSCCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCCC
T ss_conf 2699997999784999999999999968993899968999887788388678
No 378
>>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis 1330} (A:144-361)
Probab=55.94 E-value=4.2 Score=20.25 Aligned_cols=19 Identities=42% Similarity=0.587 Sum_probs=15.8
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-..+|-|-.|+||||+-..
T Consensus 33 ~~ili~G~tgSGKTT~l~a 51 (218)
T 2gza_A 33 RVIVVAGETGSGKTTLMKA 51 (218)
T ss_dssp CCEEEEESSSSCHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHH
T ss_conf 8489980798866899999
No 379
>>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} (A:)
Probab=55.74 E-value=3.1 Score=21.14 Aligned_cols=36 Identities=25% Similarity=0.244 Sum_probs=22.5
Q ss_pred EEEEEEECCCCCCCCCCCC-------CCCEEEECCCEEECCCC
Q ss_conf 0279983354311122247-------88613303110215674
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS-------VDRFLIGDDEHGWSKEG 254 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d-------~~r~LigDDehgW~d~g 254 (509)
-...|-|.+|+||||+... +....+..+..-|..-+
T Consensus 5 ~~I~ieG~~GsGKTT~a~~L~~~L~~~~~~~~~~~~~~~~~~~ 47 (331)
T 1e2k_A 5 LRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLG 47 (331)
T ss_dssp EEEEECSCTTSSHHHHHHHHTC----CCEEEECCCHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCC
T ss_conf 3999988977789999999999845489379825422125789
No 380
>>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} (A:85-360)
Probab=55.54 E-value=5.1 Score=19.68 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=17.0
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
.-.++||-+|+|||||..+
T Consensus 74 Qr~~I~~~~g~GKT~l~~~ 92 (276)
T 2dpy_A 74 QRMGLFAGSGVGKSVLLGM 92 (276)
T ss_dssp CEEEEEECTTSSHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHH
T ss_conf 4034567542037999764
No 381
>>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* (A:223-402)
Probab=55.48 E-value=4.2 Score=20.23 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=15.7
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-..++.|.+|.|||||-..
T Consensus 12 ~~I~iiG~~nvGKSSLin~ 30 (180)
T 3gee_A 12 VSTVIAGKPNAGKSTLLNT 30 (180)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHH
T ss_conf 7168766332106799999
No 382
>>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} (A:)
Probab=55.22 E-value=3.8 Score=20.57 Aligned_cols=21 Identities=48% Similarity=0.610 Sum_probs=17.0
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
..--.++.|.+|.|||||-..
T Consensus 17 ~~~kivivG~~~vGKTsLi~r 37 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYR 37 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHH
T ss_conf 679999999999988999928
No 383
>>2zci_A Phosphoenolpyruvate carboxykinase [GTP], phosphoenolpyruvate; GTP-dependent, signaling protein, lyase; 2.30A {Corynebacterium glutamicum} (A:227-313,A:404-610)
Probab=55.18 E-value=14 Score=16.87 Aligned_cols=235 Identities=18% Similarity=0.205 Sum_probs=115.2
Q ss_pred HHHHHHHHCCCCCEEEEECCCC--CCCCCC--EEEEEEECCCCCCCCCCC-CCC-----CEEEECCCEEECCCCCCCCCC
Q ss_conf 9999986241078799312453--477787--027998335431112224-788-----613303110215674123455
Q gi|254780826|r 191 VFTYLNHIFPERGIMPMHCSIN--MDKEKE--DVALFFGLSGTGKTTLSA-SVD-----RFLIGDDEHGWSKEGVFNFEG 260 (509)
Q Consensus 191 iFtvmny~lp~~g~lpmHcsan--~~~~~~--d~alfFGLSGTGKTTLS~-d~~-----r~LigDDehgW~d~gvfn~Eg 260 (509)
-+++..++.-++|-|.=|-=.- .+.+|. .++.- -.|+.|||+|+- .|. -..||||- .|-. .-++
T Consensus 7 ALRias~~ar~eGWLaEHMlIlgv~~P~G~~~yiaaA-FPSaCGKTnlAMl~p~~~Gwkv~~vGDDI-Awm~----~~~d 80 (294)
T 2zci_A 7 ALRIASVMAREEGWMAEHMLILKLINPEGKAYHIAAA-FPSACGKTNLAMITPTIPGWTAQVVGDDI-AWLK----LRED 80 (294)
T ss_dssp TTHHHHHHHHHHTCEEECCEEEEEECSSSCEEEEEEE-CSSSHHHHHHHTCCCSSTTCEEEEEESSC-EEEE----ECSS
T ss_pred HHHHHHHHCCCCCCHHHHHHEEEEECCCCCEEEEEEE-ECCCCCCCCHHHCCCCCCCCCCEEECCCE-EEEE----ECCC
T ss_conf 7778765335566377542101442799987899987-05645642042217888887641761546-4678----7699
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 53211013583335135887530110312400578981111478867670589860004310002567887269996026
Q gi|254780826|r 261 GCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAAD 340 (509)
Q Consensus 261 GcYaK~i~Ls~~~EP~I~~aa~~~~ailENV~~d~~~~~df~d~s~TeNtR~~yp~~~i~n~~~~~~~~~p~~iifl~~d 340 (509)
|.|| | -| | | |+.|+ ..+.|||=-+|
T Consensus 81 glrA--i------NP--w----------e----dP~GV-------------------------------pi~aiiFGGRr 105 (294)
T 2zci_A 81 GLYA--V------NP--F----------N----DWEGV-------------------------------KIDAILFGGRR 105 (294)
T ss_dssp SEEE--E------CC--G----------G----CTTCE-------------------------------ECSEEEEECCC
T ss_pred CCEE--E------CC--C----------C----CCCCC-------------------------------CCEEEEEECCC
T ss_conf 8467--5------46--5----------4----66788-------------------------------72289970577
Q ss_pred CCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHH---HHHHHHCCEEEEEE
Q ss_conf 778876044418588999997423245666200012565312100105001568315389999---99988198099981
Q gi|254780826|r 341 AFGVLPPVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILK---DYIVKYCVDCWLVN 417 (509)
Q Consensus 341 ~~gvlPpvsklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~---~~i~~~~~~vyLvN 417 (509)
+.+ +|+|..-..=+-.-+..+.-.+..+.+....+.-+..+-+-=.-||+.++...|-+--. ++..+.-.++|-||
T Consensus 106 ~~t-~PlV~ea~~W~hGV~~ga~m~Se~TaAaa~g~~g~~r~dP~AMlPF~gYn~gdY~~HWL~~g~~~~~~~PkIF~VN 184 (294)
T 2zci_A 106 ADT-VPLVTQTYDWEHGTMVGALLASGQTAASAEAKVGTLRHDPMAMLPFIGYNAGEYLQNWIDMGNKGGDKMPSIFLVN 184 (294)
T ss_dssp SSS-SCSEEECSSHHHHHHHHHTCBCCC--------CCCCCBCGGGCTTTCCSCHHHHHHHHHHHHHHHGGGSCEEEEEC
T ss_pred CCC-CCCEEEECCCCCHHHHHHHHCCCCCEECCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 778-7852860453205888888703530001135567267564346875677999999999997651467798089984
Q ss_pred C------C---CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCC----CCCCCC-HHHCCHHHHCCC
Q ss_conf 6------7---4688768873207889999999998496024660667887742562----079899-656497662599
Q gi|254780826|r 418 T------G---WTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPL----EVKGVD-RKLLNPRDSWND 483 (509)
Q Consensus 418 T------G---w~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~~~~~~~~~~f~l~iP~----~~~gv~-~~~l~P~~~w~d 483 (509)
= | |-| +|--.| .-.=|++- .+|+.+ -..-|+ |+ ||+ .+.|.+ ++..-....=-|
T Consensus 185 WFrkd~~G~FlWPG--fgeN~R----vL~Wi~~R-~~G~~~---a~eTPi-G~-iP~~~dLdl~Gld~~~~~~~~l~~v~ 252 (294)
T 2zci_A 185 WFRRGEDGRFLWPG--FGDNSR----VLKWVIDR-IEGHVG---ADETVV-GH-TAKAEDLDLDGLDTPIEDVKEALTAP 252 (294)
T ss_dssp TTCBCTTSCBSSCC--GGGHHH----HHHHHHHH-HHTCCC---CEECSS-SE-ECCGGGSCCSCCCSCCTTHHHHHCCC
T ss_pred CCEECCCCCCCCCC--CCCCEE----HHHHHHHH-HCCCCC---CCCCCC-CC-CCCCCCCCCCCCCCCHHHHHHHHCCC
T ss_conf 13057998872588--887600----99999999-659656---233665-35-68755467558888977899985889
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 8999999999999999
Q gi|254780826|r 484 VEAYDQKMRELLLMFE 499 (509)
Q Consensus 484 ~~~Y~~~a~~L~~~F~ 499 (509)
++.|.+++....+-|.
T Consensus 253 ~~~W~~E~~~i~~~~~ 268 (294)
T 2zci_A 253 AEQWANDVEDNAEYLT 268 (294)
T ss_dssp HHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 8999999999999998
No 384
>>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8} (A:107-382)
Probab=55.13 E-value=3.5 Score=20.76 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=16.9
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
...++||-+|+|||||..+
T Consensus 70 Qr~~Ifa~~G~GKT~l~~~ 88 (276)
T 2r9v_A 70 QRELIIGDRQTGKTAIAID 88 (276)
T ss_dssp CBEEEEEETTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 6788756888766788998
No 385
>>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum 3D7} (A:)
Probab=55.04 E-value=5.7 Score=19.39 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=16.7
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
..-..+|.|.+|.|||||-..
T Consensus 28 ~~~~i~iiG~~~vGKSSLin~ 48 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNI 48 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
T ss_conf 999899989999989999999
No 386
>>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} (A:)
Probab=54.92 E-value=4.1 Score=20.34 Aligned_cols=17 Identities=41% Similarity=0.563 Sum_probs=14.8
Q ss_pred EEEEEECCCCCCCCCCC
Q ss_conf 27998335431112224
Q gi|254780826|r 220 VALFFGLSGTGKTTLSA 236 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~ 236 (509)
-.+++|..|+|||||-.
T Consensus 22 ki~ivG~~~vGKTsli~ 38 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLV 38 (213)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
T ss_conf 99999999979999999
No 387
>>3i4l_A A-type ATP synthase catalytic subunit A; hydrolase; HET: ANP; 2.40A {Pyrococcus horikoshii} PDB: 3i72_A 3i73_A* 3ikj_A 1vdz_A (A:1-101,A:190-440)
Probab=54.87 E-value=4.3 Score=20.16 Aligned_cols=19 Identities=32% Similarity=0.330 Sum_probs=17.1
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
...+.||-+|+|||+|.++
T Consensus 140 Qr~~I~g~~g~GKT~l~~~ 158 (352)
T 3i4l_A 140 GTAAIPGPFGSGKTVTQHQ 158 (352)
T ss_dssp CEEEEESCTTCTTCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 6037767888881499999
No 388
>>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A (A:118-313)
Probab=54.70 E-value=4.9 Score=19.78 Aligned_cols=49 Identities=27% Similarity=0.421 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 15683153899999998819809998167468876887320788999999999849602
Q gi|254780826|r 391 MPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIK 449 (509)
Q Consensus 391 ~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~ 449 (509)
+|+.|.-+.-+=.+.++.-+-..+||||| |=++=.+.++++++-+|.|.
T Consensus 112 ~plt~~T~~li~~~~l~~mk~ga~liN~~----------RG~~vd~~aL~~aL~~g~i~ 160 (196)
T 2j6i_A 112 APLHAGTKGLINKELLSKFKKGAWLVNTA----------RGAICVAEDVAAALESGQLR 160 (196)
T ss_dssp CCCSTTTTTCBCHHHHTTSCTTEEEEECS----------CGGGBCHHHHHHHHHHTSEE
T ss_pred HHCCCCCCCCCCHHHHHHCCCCCEEEECC----------CHHHHCHHHHHHHHHCCCEE
T ss_conf 00000223433899996179997897147----------26553308799999849804
No 389
>>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} (C:)
Probab=54.44 E-value=5.3 Score=19.60 Aligned_cols=19 Identities=37% Similarity=0.352 Sum_probs=16.0
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
--.++.|.+|.|||||-..
T Consensus 9 ~kivivG~~~vGKTsLi~r 27 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFR 27 (183)
T ss_dssp EEEEEECCCCC--------
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 8999999999388999999
No 390
>>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} (A:)
Probab=54.34 E-value=4.2 Score=20.25 Aligned_cols=35 Identities=20% Similarity=0.194 Sum_probs=22.1
Q ss_pred CEEEEECCCCCCC----CCCEEEEEEECCCCCCCCCCCC
Q ss_conf 8799312453477----7870279983354311122247
Q gi|254780826|r 203 GIMPMHCSINMDK----EKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 203 g~lpmHcsan~~~----~~~d~alfFGLSGTGKTTLS~d 237 (509)
...+|+....... ...--.++.|.||.|||+|-..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~KivilGd~~VGKTsli~r 47 (196)
T 2atv_A 9 SGVDLGTENLYFQSMAKSAEVKLAIFGRAGVGKSALVVR 47 (196)
T ss_dssp ------------------CCEEEEEECCTTSSHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHH
T ss_conf 875557533233344689865999989999799999999
No 391
>>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* (A:1-271)
Probab=54.14 E-value=4.1 Score=20.35 Aligned_cols=19 Identities=37% Similarity=0.377 Sum_probs=17.1
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
.-.++||-+|+|||||..+
T Consensus 72 Qr~~I~a~~g~GKT~ll~~ 90 (271)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGM 90 (271)
T ss_dssp CEEEEEECTTSSHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHH
T ss_conf 7443468888768888654
No 392
>>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} (Y:)
Probab=54.05 E-value=4.6 Score=19.96 Aligned_cols=18 Identities=39% Similarity=0.436 Sum_probs=15.1
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
--.++.|.+|.|||+|-.
T Consensus 9 ~KIviiGd~gVGKTsli~ 26 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLL 26 (206)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
T ss_conf 899999999919899999
No 393
>>2p67_A LAO/AO transport system kinase; ARGK, structural genomics, PSI-2, protein structure initiative; 1.80A {Escherichia coli K12} (A:1-265)
Probab=53.97 E-value=5 Score=19.73 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=15.4
Q ss_pred CEEEEEEECCCCCCCCCC
Q ss_conf 702799833543111222
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS 235 (509)
.-+..+.|..|.|||||-
T Consensus 56 ~~~v~ivG~~~aGKSTLl 73 (265)
T 2p67_A 56 TLRLGVTGTPGAGKSTFL 73 (265)
T ss_dssp SEEEEEEECTTSCHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
T ss_conf 418974489999899999
No 394
>>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} (A:)
Probab=53.76 E-value=4.7 Score=19.91 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=16.8
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
..--.++.|.+|+|||||-..
T Consensus 15 ~~~ki~iiG~~~vGKTsli~~ 35 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQ 35 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHH
T ss_conf 837999999999888999999
No 395
>>2j28_9 Signal recognition particle 54; ribosome, protein/RNA complex; 8.0A {Escherichia coli} (9:92-330)
Probab=53.74 E-value=7.9 Score=18.45 Aligned_cols=18 Identities=50% Similarity=0.661 Sum_probs=15.4
Q ss_pred CEEEEEEECCCCCCCCCC
Q ss_conf 702799833543111222
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS 235 (509)
..+.++-|..|+||||.-
T Consensus 8 ~~vv~i~G~tGsGKST~i 25 (239)
T 2j28_9 8 PAVVLMAGLQGAGKTTSV 25 (239)
T ss_dssp SCEEEEECSSSSSSTTTH
T ss_pred CEEEEEEEECCCCCCHHH
T ss_conf 869999963288751369
No 396
>>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} (A:243-411)
Probab=53.70 E-value=3.2 Score=21.00 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.3
Q ss_pred EEEEEECCCCCCCCCCC
Q ss_conf 27998335431112224
Q gi|254780826|r 220 VALFFGLSGTGKTTLSA 236 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~ 236 (509)
-.+++|.+|.|||||-.
T Consensus 3 kI~ivG~~~vGKSsLi~ 19 (169)
T 1xzp_A 3 RMVIVGKPNVGKSTLLN 19 (169)
T ss_dssp EEEEECCHHHHTCHHHH
T ss_pred EEEEECCCCCHHHHHHH
T ss_conf 39997565640689999
No 397
>>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell membrane, GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} (A:)
Probab=53.59 E-value=4.8 Score=19.88 Aligned_cols=19 Identities=32% Similarity=0.282 Sum_probs=15.9
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
--.++.|.+|.|||+|-..
T Consensus 24 ~KivivGd~~vGKTSli~r 42 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFR 42 (191)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 6999999999398999999
No 398
>>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B (A:112-306)
Probab=53.49 E-value=9.2 Score=18.00 Aligned_cols=49 Identities=20% Similarity=0.222 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 15683153899999998819809998167468876887320788999999999849602
Q gi|254780826|r 391 MPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIK 449 (509)
Q Consensus 391 ~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~ 449 (509)
+|+.+.-+.-+=.+.++.-+-.++||||| |=++=..-++++|.-+|.+.
T Consensus 117 ~plt~~T~~li~~~~l~~mk~~a~liN~a----------RG~ivd~~aL~~aL~~g~i~ 165 (195)
T 2w2k_A 117 VPYMKLTHHLIDEAFFAAMKPGSRIVNTA----------RGPVISQDALIAALKSGKLL 165 (195)
T ss_dssp CCCSGGGTTCBCHHHHHHSCTTEEEEECS----------CGGGBCHHHHHHHHHTTSEE
T ss_pred ECCCCCCHHHHHHHHHHHCCCCCEEEEEC----------CCCCCCHHHHHHHHHHCCCC
T ss_conf 02335637776566744414673688504----------42246788999877501116
No 399
>>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} (A:)
Probab=53.44 E-value=4.4 Score=20.09 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=14.1
Q ss_pred EEEEEECCCCCCCCCC
Q ss_conf 2799833543111222
Q gi|254780826|r 220 VALFFGLSGTGKTTLS 235 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS 235 (509)
-.++.|.+|+|||||-
T Consensus 22 ki~ivG~~~~GKTsLi 37 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLT 37 (189)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
T ss_conf 9999999991999999
No 400
>>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome assembly, GTP-binding; HET: GNP; 1.90A {Aquifex aeolicus} (A:1-190,A:295-308)
Probab=53.43 E-value=4.8 Score=19.88 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=14.4
Q ss_pred EEEEEECCCCCCCCCCC
Q ss_conf 27998335431112224
Q gi|254780826|r 220 VALFFGLSGTGKTTLSA 236 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~ 236 (509)
..++.|.+|.|||||-.
T Consensus 12 ~V~iiG~~~~GKSSLin 28 (204)
T 3iev_A 12 YVAIVGKPNVGKSTLLN 28 (204)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
T ss_conf 89999999986999999
No 401
>>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* (A:)
Probab=53.08 E-value=4.9 Score=19.82 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=15.2
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
-..++.|.+|.|||||..
T Consensus 4 ~kv~iiG~~~vGKStLi~ 21 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFN 21 (165)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
T ss_conf 199999899998999999
No 402
>>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} (A:168-353)
Probab=53.02 E-value=4.6 Score=20.02 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=15.3
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
-..+++|.+|.|||||--
T Consensus 9 ~~v~iiG~~~vGKSsLin 26 (186)
T 2hjg_A 9 IQFCLIGRPNVGKSSLVN 26 (186)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
T ss_conf 179998799988899888
No 403
>>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} (A:)
Probab=52.75 E-value=7.3 Score=18.67 Aligned_cols=24 Identities=25% Similarity=0.176 Sum_probs=17.4
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 477787027998335431112224
Q gi|254780826|r 213 MDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 213 ~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
...+..--.++.|.+|+|||+|-.
T Consensus 4 ~~~~~~~KI~iiG~~~vGKTsli~ 27 (212)
T 2j0v_A 4 MSVSKFIKCVTVGDGAVGKTCMLI 27 (212)
T ss_dssp CSCCCEEEEEEEESTTSSHHHHHH
T ss_pred CCCCCEEEEEEECCCCCCHHHHHH
T ss_conf 876875799999979979899999
No 404
>>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.40A {Homo sapiens} (A:)
Probab=52.64 E-value=4.7 Score=19.96 Aligned_cols=17 Identities=35% Similarity=0.630 Sum_probs=14.7
Q ss_pred EEEEEECCCCCCCCCCC
Q ss_conf 27998335431112224
Q gi|254780826|r 220 VALFFGLSGTGKTTLSA 236 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~ 236 (509)
-.++.|..|+|||||-.
T Consensus 39 kI~iiG~~~vGKTsli~ 55 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLAN 55 (211)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
T ss_conf 99999959959899999
No 405
>>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} (A:)
Probab=52.61 E-value=4.2 Score=20.23 Aligned_cols=17 Identities=29% Similarity=0.601 Sum_probs=14.4
Q ss_pred EEEEEECCCCCCCCCCC
Q ss_conf 27998335431112224
Q gi|254780826|r 220 VALFFGLSGTGKTTLSA 236 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~ 236 (509)
-.++.|.+++|||||-.
T Consensus 6 ki~iiG~~~vGKTSLi~ 22 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTL 22 (168)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
T ss_conf 99999989958899999
No 406
>>1xtq_A GTP-binding protein RHEB; beta saddle, P-loop, signaling protein; HET: GDP; 2.00A {Homo sapiens} (A:)
Probab=52.60 E-value=5.1 Score=19.71 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=15.8
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
--.++.|.+|.|||||-..
T Consensus 7 ~KvvivG~~~vGKTsli~r 25 (177)
T 1xtq_A 7 RKIAILGYRSVGKSSLTIQ 25 (177)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 6999999899098999999
No 407
>>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} (A:102-299)
Probab=52.17 E-value=5.8 Score=19.31 Aligned_cols=49 Identities=22% Similarity=0.226 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 15683153899999998819809998167468876887320788999999999849602
Q gi|254780826|r 391 MPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIK 449 (509)
Q Consensus 391 ~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~ 449 (509)
+|+.|.-+.-+=.+.++.-+..++||||| |=++=.+-++++|..+|.|.
T Consensus 105 ~plt~~T~~li~~~~l~~mk~~a~liN~~----------RG~ivd~~aL~~aL~~g~i~ 153 (198)
T 1xdw_A 105 APYIKENGAVVTRDFLKKMKDGAILVNCA----------RGQLVDTEAVIEAVESGKLG 153 (198)
T ss_dssp CCCCTTTCCSBCHHHHHTSCTTEEEEECS----------CGGGBCHHHHHHHHHHTSEE
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEECC----------CHHHHCHHHHHHHCCCHHHC
T ss_conf 21101012254699998779998899776----------35551206664520111102
No 408
>>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A (A:)
Probab=52.13 E-value=4.8 Score=19.87 Aligned_cols=19 Identities=21% Similarity=0.155 Sum_probs=15.8
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
--.++.|.+|+|||||-..
T Consensus 8 ~ki~iiG~~~vGKTsli~~ 26 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHR 26 (178)
T ss_dssp EEEEEECCGGGCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 7999999999789999999
No 409
>>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} (B:)
Probab=51.99 E-value=4.8 Score=19.84 Aligned_cols=19 Identities=42% Similarity=0.655 Sum_probs=15.7
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
.-..++.|.+|.|||||-.
T Consensus 7 ~~ki~ivG~~~vGKSsLi~ 25 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFV 25 (214)
T ss_dssp -CEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 9979999999989899999
No 410
>>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* (A:)
Probab=51.95 E-value=5 Score=19.73 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=15.9
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-..++.|.+|+|||||-..
T Consensus 22 ~ki~iiG~~~~GKSsLi~r 40 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQ 40 (181)
T ss_dssp EEEEEEEETTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 7999999899598999999
No 411
>>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta fold and the C-terminal all beta domain., structural genomics, PSI-2; 2.00A {Nostoc SP} (A:1-297)
Probab=51.91 E-value=4.4 Score=20.09 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=19.3
Q ss_pred EEEEEECCCCCCCCCCCC--------CCCE-EEECCCEE
Q ss_conf 279983354311122247--------8861-33031102
Q gi|254780826|r 220 VALFFGLSGTGKTTLSAS--------VDRF-LIGDDEHG 249 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d--------~~r~-LigDDehg 249 (509)
++++=|=.|+||||+|+. .+|. |+.||...
T Consensus 4 I~v~s~KGGVGKTT~a~nLA~~LA~~g~~v~li~d~d~~ 42 (297)
T 3igf_A 4 ILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGLAEPV 42 (297)
T ss_dssp EEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEECSCSH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 999988987829999999999999789959999188998
No 412
>>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor; HET: GDP; 1.46A {Bos taurus} (A:)
Probab=51.89 E-value=4.9 Score=19.82 Aligned_cols=16 Identities=44% Similarity=0.634 Sum_probs=14.0
Q ss_pred EEEEECCCCCCCCCCC
Q ss_conf 7998335431112224
Q gi|254780826|r 221 ALFFGLSGTGKTTLSA 236 (509)
Q Consensus 221 alfFGLSGTGKTTLS~ 236 (509)
.++.|.+|.|||||-.
T Consensus 3 i~ivG~~~vGKTsli~ 18 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILY 18 (164)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
T ss_conf 9999999968899999
No 413
>>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} (A:174-359)
Probab=51.73 E-value=4.9 Score=19.80 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=15.2
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
-..+++|.+|.|||||--
T Consensus 8 ~~I~iiG~~~~GKSSlin 25 (186)
T 1mky_A 8 IKVAIVGRPNVGKSTLFN 25 (186)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
T ss_conf 479998999987899999
No 414
>>2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A {Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A* (A:1-106,A:189-283)
Probab=51.35 E-value=5.3 Score=19.59 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=16.1
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
...+..|..||||||....
T Consensus 23 ~~~lV~g~aGsGKT~~~~~ 41 (201)
T 2is6_A 23 SNLLVLAGAGSGKTRVLVH 41 (201)
T ss_dssp SCEEEECCTTSSHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHH
T ss_conf 9989998286599999999
No 415
>>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* (A:)
Probab=51.25 E-value=5.9 Score=19.27 Aligned_cols=19 Identities=37% Similarity=0.396 Sum_probs=15.8
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
--+.++.|.+|.|||||-.
T Consensus 38 ~~~i~iiG~~n~GKSTLin 56 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIE 56 (226)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
T ss_conf 8499998899988999999
No 416
>>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3idq_A 3a36_A 3a37_A* (A:)
Probab=51.24 E-value=6.2 Score=19.15 Aligned_cols=33 Identities=33% Similarity=0.465 Sum_probs=22.6
Q ss_pred EEEEEE-ECCCCCCCCCCCC----------CCCEEEECCCEEEC
Q ss_conf 027998-3354311122247----------88613303110215
Q gi|254780826|r 219 DVALFF-GLSGTGKTTLSAS----------VDRFLIGDDEHGWS 251 (509)
Q Consensus 219 d~alfF-GLSGTGKTTLS~d----------~~r~LigDDehgW~ 251 (509)
.+..|+ |=-|+||||+++. ..|.|+-|-...=+
T Consensus 18 ~iIav~s~KGGVGKTT~a~nLA~a~~lA~~G~rVLviD~D~q~~ 61 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHN 61 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 57999979997609999999999999865899089992699999
No 417
>>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, cytoplasm, metal-binding, nucleotide biosynthesis, nucleotide-binding; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* (A:1-117,A:163-216)
Probab=50.99 E-value=4.8 Score=19.87 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=25.7
Q ss_pred CCCCCCCEEEEEECCCCCCCCHHHHCC------HHHHHHHHHHHCCCCCCCC
Q ss_conf 567887269996026778876044418------5889999974232456662
Q gi|254780826|r 326 SIGKHPKHVIMLAADAFGVLPPVAYLN------PEKAVYYFLSGYTAKVAGT 371 (509)
Q Consensus 326 ~~~~~p~~iifl~~d~~gvlPpvsklt------~~qa~~~F~sGyT~k~agt 371 (509)
.....|..+|.|-++....---..||. .+-..||=-.|--.++.|+
T Consensus 102 ~~~~~~~~vi~L~~~dd~~e~~~~R~~~~~~~t~Pvi~yy~~~~~~~~i~~~ 153 (171)
T 3dl0_A 102 EMGKPIDYVINIQVDKDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQ 153 (171)
T ss_dssp HTTCCCSEEEEEECCGCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS
T ss_pred HCCCCCCEEEEECCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 6099766567613789789999999999999999999999956988999899
No 418
>>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 subcomplex of F1-ATPase, hydrolase; 3.20A {Bacillus SP} (E:87-356)
Probab=50.96 E-value=4.6 Score=20.01 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=17.3
Q ss_pred EEEEEEECCCCCCCCCCCCC
Q ss_conf 02799833543111222478
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSASV 238 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d~ 238 (509)
.-.++||-+|+|||||..+=
T Consensus 66 Qr~~If~~~g~GKt~l~~~i 85 (270)
T 1sky_E 66 GKIGLFGGAGVGKTVLIQEL 85 (270)
T ss_dssp CEEEEECCSSSCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
T ss_conf 76664558998889999999
No 419
>>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 3.20A {Nostoc SP} (A:214-390)
Probab=50.67 E-value=5.7 Score=19.39 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=15.7
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-..+|+|.++.|||||-..
T Consensus 12 ~~i~liG~~~vGKSsLin~ 30 (177)
T 3geh_A 12 LKVAIVGRPNVGKSSLLNA 30 (177)
T ss_dssp EEEEEEECTTSSHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHH
T ss_conf 3699972556661257777
No 420
>>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} (A:)
Probab=50.66 E-value=5.7 Score=19.39 Aligned_cols=19 Identities=32% Similarity=0.223 Sum_probs=15.8
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
--.++.|.+|.|||+|-..
T Consensus 8 ~KivilGd~~vGKTsLi~r 26 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHV 26 (184)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 7999999899498999999
No 421
>>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluorescence, membrane, disease mutation, golgi stack, GTP- binding; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* 1gnr_A* 1k8r_A* ... (X:)
Probab=50.54 E-value=5.7 Score=19.37 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=14.7
Q ss_pred EEEEEECCCCCCCCCCC
Q ss_conf 27998335431112224
Q gi|254780826|r 220 VALFFGLSGTGKTTLSA 236 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~ 236 (509)
-.++.|.+|.|||+|-.
T Consensus 5 KivivGd~~vGKTsli~ 21 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTI 21 (166)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
T ss_conf 99999969989999999
No 422
>>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii OT3} (A:)
Probab=50.50 E-value=6.3 Score=19.10 Aligned_cols=18 Identities=39% Similarity=0.506 Sum_probs=15.1
Q ss_pred EEEEEECCCCCCCCCCCC
Q ss_conf 279983354311122247
Q gi|254780826|r 220 VALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d 237 (509)
+.+|.|.++.|||||.-.
T Consensus 3 ~v~iiG~~naGKSSL~n~ 20 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYR 20 (190)
T ss_dssp EEEEEEBTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
T ss_conf 899989999889999999
No 423
>>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus} (A:185-358)
Probab=50.41 E-value=8.3 Score=18.28 Aligned_cols=33 Identities=21% Similarity=0.449 Sum_probs=27.8
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCHHHHCCH
Q ss_conf 100025678872699960267788760444185
Q gi|254780826|r 321 NHAPQSIGKHPKHVIMLAADAFGVLPPVAYLNP 353 (509)
Q Consensus 321 n~~~~~~~~~p~~iifl~~d~~gvlPpvsklt~ 353 (509)
|+++.+.++.-.+-+||.+|.+.-.||+..++.
T Consensus 30 ~a~pgs~ag~gtqyfwlskd~ydffppltirn~ 62 (174)
T 2c1l_A 30 QAAPGTTAGQGTQYFWLSKDSYDFFPPLTIRNR 62 (174)
T ss_dssp HSCTTCGGGCSCCEEEECTTCTTTSSCCCEECC
T ss_pred CCCCCCCCCCCCEEEEEECCHHHCCCCCEEECC
T ss_conf 047787557651579974451111785155514
No 424
>>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} (A:)
Probab=50.12 E-value=5.4 Score=19.53 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=15.3
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
--.++.|.+|.|||||-..
T Consensus 4 ~KivivG~~~vGKTsli~r 22 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQ 22 (167)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 6999999899499999999
No 425
>>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} (A:)
Probab=50.09 E-value=5.4 Score=19.52 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=15.4
Q ss_pred EEEEEECCCCCCCCCCCC
Q ss_conf 279983354311122247
Q gi|254780826|r 220 VALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d 237 (509)
-.++.|.+|.|||||-..
T Consensus 8 Ki~ivG~~~vGKTSLi~r 25 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLR 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
T ss_conf 999999999898999999
No 426
>>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A* (A:)
Probab=49.89 E-value=7.7 Score=18.51 Aligned_cols=36 Identities=25% Similarity=0.245 Sum_probs=23.3
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCC--------CCCEEEECCC
Q ss_conf 34777870279983354311122247--------8861330311
Q gi|254780826|r 212 NMDKEKEDVALFFGLSGTGKTTLSAS--------VDRFLIGDDE 247 (509)
Q Consensus 212 n~~~~~~d~alfFGLSGTGKTTLS~d--------~~r~LigDDe 247 (509)
+.++....+.++-|=-|+||||+++. ..|.|+-|-.
T Consensus 35 ~~~~~~~~Ii~~s~KGGvGKTT~a~~lA~~La~~g~kVllID~D 78 (307)
T 3end_A 35 ADKITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCD 78 (307)
T ss_dssp -----CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 55788853999989987479999999999999879928999437
No 427
>>1vr0_A Probable 2-phosphosulfolactate phosphatase; 15026306, putative 2-phosphosulfolactate phosphatase, structural genomics; HET: 3SL; 2.49A {Clostridium acetobutylicum} (A:1-40,A:126-207)
Probab=49.80 E-value=16 Score=16.32 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHH---HHHHHHH
Q ss_conf 53899999998819809998167468876887320788999---9999998
Q gi|254780826|r 397 QYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTR---ALLKAIF 444 (509)
Q Consensus 397 ~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr---~ii~ai~ 444 (509)
.-+.-..+++.+.+-+|++|.-||.| |++++.+- +|++.+.
T Consensus 51 lNasAVA~~l~~~~~dV~IVcAG~~G-------~fslED~l~AGaIi~~L~ 94 (122)
T 1vr0_A 51 LNGEAVAEKIVELNNDVVIVNAGTYG-------EFSIDDFICSGYIINCVX 94 (122)
T ss_dssp TTHHHHHHHHHHHTSCEEEEECCBTT-------BCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCEEEEECCCCC-------CCCHHHHHHHHHHHHHHH
T ss_conf 11999999999649998999278899-------986788886899999985
No 428
>>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A* (1:)
Probab=49.18 E-value=5.6 Score=19.44 Aligned_cols=31 Identities=26% Similarity=0.246 Sum_probs=20.8
Q ss_pred EEEEEEEC-CCCCCCCCCCC--------CCCEEEECCCEE
Q ss_conf 02799833-54311122247--------886133031102
Q gi|254780826|r 219 DVALFFGL-SGTGKTTLSAS--------VDRFLIGDDEHG 249 (509)
Q Consensus 219 d~alfFGL-SGTGKTTLS~d--------~~r~LigDDehg 249 (509)
.+..|.+. -|+||||+++. .+|.|+.|....
T Consensus 7 kvI~v~s~KGGvGKTTia~~LA~~la~~g~kVlliD~D~~ 46 (257)
T 1wcv_1 7 RRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQ 46 (257)
T ss_dssp CEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 6999987999885999999999999978997899967999
No 429
>>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* (B:)
Probab=48.75 E-value=5.8 Score=19.34 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=15.9
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
--.++.|.+|.|||+|-..
T Consensus 13 ~KivivG~~~vGKTSli~r 31 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLR 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 4999989999699999999
No 430
>>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} (A:)
Probab=48.75 E-value=6.4 Score=19.03 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=17.9
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 3477787027998335431112224
Q gi|254780826|r 212 NMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 212 n~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
+...+..--.++.|.+|.|||+|-.
T Consensus 20 ~~~~~~~~KivlvGd~~vGKTsli~ 44 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLME 44 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHH
T ss_pred CCCCCEEEEEEEECCCCCCHHHHHH
T ss_conf 9975668999999989877487998
No 431
>>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structural genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* (A:1-137,A:202-246)
Probab=48.64 E-value=5.5 Score=19.48 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=16.2
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-..+++|..|+||||++..
T Consensus 28 ~rIiIiGpPGSGKsT~a~~ 46 (182)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQR 46 (182)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 4499989999987999999
No 432
>>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome dynamics; HET: GDP; 2.5A {Homo sapiens} (A:)
Probab=48.63 E-value=7.4 Score=18.61 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=17.1
Q ss_pred CCCEEEEEEECCCCCCCCCCCC
Q ss_conf 7870279983354311122247
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d 237 (509)
+..--.++.|.+|.|||+|-..
T Consensus 32 ~~~~KIvliG~~~vGKTSli~r 53 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMV 53 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHH
T ss_conf 8447999989899888899998
No 433
>>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single particle analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B (A:94-368)
Probab=48.33 E-value=6.5 Score=19.00 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=17.0
Q ss_pred EEEEEEECCCCCCCCCCCCC
Q ss_conf 02799833543111222478
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSASV 238 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d~ 238 (509)
...++||-+|+|||||..+-
T Consensus 70 Qr~~Ifa~~g~GKT~Ll~~i 89 (275)
T 2qe7_A 70 QRELIIGDRQTGKTTIAIDT 89 (275)
T ss_dssp CBCEEEECSSSCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
T ss_conf 67777568888776899999
No 434
>>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} (A:)
Probab=48.32 E-value=7.4 Score=18.64 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.5
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
--.++.|.+|.|||+|-.
T Consensus 22 ~KiviiGd~gVGKTsli~ 39 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLL 39 (191)
T ss_dssp EEEEEESSTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
T ss_conf 799999999969899999
No 435
>>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydrolase; HET: ADP; 2.15A {Escherichia coli} (A:1-303)
Probab=48.31 E-value=9.5 Score=17.90 Aligned_cols=29 Identities=34% Similarity=0.505 Sum_probs=19.9
Q ss_pred EEEEEEEC-CCCCCCCCCCC--------CCCEEEECCC
Q ss_conf 02799833-54311122247--------8861330311
Q gi|254780826|r 219 DVALFFGL-SGTGKTTLSAS--------VDRFLIGDDE 247 (509)
Q Consensus 219 d~alfFGL-SGTGKTTLS~d--------~~r~LigDDe 247 (509)
.+.+|++. -|+||||+|+. ..|.|+-|-.
T Consensus 8 ~vi~v~s~KGGvGKTT~a~~LA~~la~~G~rVlliD~D 45 (303)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45 (303)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 83899988970579999999999999789989999678
No 436
>>2ck3_A ATP synthase alpha chain heart isoform; ATP phosphorylase, ATP phosphorylase (H+ transporting), F1FO ATP synthase, F1-ATPase, hydrolase, ATP synthesis; HET: ANP ADP; 1.9A {Bos taurus} (A:93-380)
Probab=48.13 E-value=4.7 Score=19.90 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=16.8
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
....+||-+|+|||+|..+
T Consensus 71 qr~~If~~~G~GKt~l~~~ 89 (288)
T 2ck3_A 71 QRELIIGDRQTGKTSIAID 89 (288)
T ss_dssp CBCEEEESTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 7776556999998999999
No 437
>>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} (A:)
Probab=47.69 E-value=8.8 Score=18.11 Aligned_cols=21 Identities=43% Similarity=0.665 Sum_probs=17.2
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
.+-..++.|.+|+|||||-..
T Consensus 6 ~~~kI~iiG~~~vGKTsli~~ 26 (171)
T 1upt_A 6 REXRILILGLDGAGKTTILYR 26 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
T ss_conf 324899999999759999999
No 438
>>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substrate-binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2h1s_A 2q50_A (A:108-297)
Probab=47.63 E-value=7.9 Score=18.44 Aligned_cols=50 Identities=20% Similarity=0.214 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 156831538999999988198099981674688768873207889999999998496024
Q gi|254780826|r 391 MPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKS 450 (509)
Q Consensus 391 ~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~~ 450 (509)
+|+.|.-..-+=.+.++.-+-.++||||| |=++=.+.++++|+-+|.+..
T Consensus 111 ~Plt~~T~~li~~~~~~~mk~ga~liNv~----------RG~ivde~aL~~aL~~g~i~~ 160 (190)
T 2gcg_A 111 CSLTPATEGLCNKDFFQKMKETAVFINIS----------RGDVVNQDDLYQALASGKIAA 160 (190)
T ss_dssp CCCCTTTTTCBSHHHHHHSCTTCEEEECS----------CGGGBCHHHHHHHHHHTSSSE
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCEEEECC----------CCCEECHHHHHHHHHCCCEEE
T ss_conf 46787854223799998530012278615----------772300989999986493779
No 439
>>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} (A:)
Probab=47.62 E-value=5.6 Score=19.40 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=15.6
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
--.++.|-+|+|||+|-..
T Consensus 8 ~KIvvlG~~gvGKTSLi~~ 26 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLR 26 (208)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 6999999999398999999
No 440
>>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenase, oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} (A:101-297)
Probab=47.56 E-value=12 Score=17.34 Aligned_cols=87 Identities=16% Similarity=0.125 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCC-CCC--CCEE---EHHHC-----CCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCC
Q ss_conf 58899999742324566620001-256--5312---10010-----5001568315389999999881980999816746
Q gi|254780826|r 353 PEKAVYYFLSGYTAKVAGTEKGV-LKP--EATF---SACFG-----APFMPRDPVQYGNILKDYIVKYCVDCWLVNTGWT 421 (509)
Q Consensus 353 ~~qa~~~F~sGyT~k~agte~g~-~ep--~~tf---s~cFg-----~PF~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~ 421 (509)
-.|+.+-.+.++-+++.+..+.. ..+ ...+ ...+. ---+|+.+.-..-+=.+.++.-+-.++|||+|
T Consensus 56 IG~~ia~~~~~~g~~V~~~~~~~~~~~~~~~~~~~~~e~~~~sDiv~~~lPlt~~T~~li~~~~l~~mk~~a~liN~~-- 133 (197)
T 1dxy_A 56 IGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTA-- 133 (197)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECS--
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEECCHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHCCCCCEEEECC--
T ss_conf 999999996278978999899764000478355289999861999999326876554654899997369983899535--
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 8876887320788999999999849602
Q gi|254780826|r 422 AGSYGEGYRMPLSVTRALLKAIFDNSIK 449 (509)
Q Consensus 422 Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~ 449 (509)
|=.+=.+-++++|.-+|.|.
T Consensus 134 --------RG~iVd~~aL~~aL~~g~i~ 153 (197)
T 1dxy_A 134 --------RPNLIDTQAMLSNLKSGKLA 153 (197)
T ss_dssp --------CTTSBCHHHHHHHHHTTSEE
T ss_pred --------CCCCCCHHHHHHHHHHCCCC
T ss_conf --------76532899999999829863
No 441
>>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} (A:99-288)
Probab=47.49 E-value=7.7 Score=18.51 Aligned_cols=49 Identities=20% Similarity=0.126 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 15683153899999998819809998167468876887320788999999999849602
Q gi|254780826|r 391 MPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIK 449 (509)
Q Consensus 391 ~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~ 449 (509)
+|+.|.-+.-+=.+.++.-+-..+||||| |=++=.+-++++|..+|.|.
T Consensus 112 ~plt~~T~~li~~~~l~~mk~~a~liN~~----------Rg~~vd~~aL~~aL~~g~i~ 160 (190)
T 1gdh_A 112 APSTPETRYFFNKATIKSLPQGAIVVNTA----------RGDLVDNELVVAALEAGRLA 160 (190)
T ss_dssp CCCCTTTTTCBSHHHHTTSCTTEEEEECS----------CGGGBCHHHHHHHHHHTSEE
T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEECC----------CCCCCCHHHHHHHHHCCCEE
T ss_conf 68874114577788876326630798525----------65416669999998659735
No 442
>>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepressor, transcription repressor; HET: NAD; 1.95A {Homo sapiens} (A:117-311)
Probab=47.40 E-value=6.5 Score=19.00 Aligned_cols=51 Identities=22% Similarity=0.150 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 1568315389999999881980999816746887688732078899999999984960246
Q gi|254780826|r 391 MPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSV 451 (509)
Q Consensus 391 ~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~~~ 451 (509)
+|+.|.-+.-+=.+.++.-+-.+++||+| |=.+=.+.++++|+.+|.+..+
T Consensus 115 ~plt~~T~~li~~~~l~~mk~~a~~iN~~----------RG~~vd~~aL~~aL~~g~i~~a 165 (195)
T 1mx3_A 115 CGLNEHNHHLINDFTVKQMRQGAFLVNTA----------RGGLVDEKALAQALKEGRIRGA 165 (195)
T ss_dssp CCCCTTCTTSBSHHHHTTSCTTEEEEECS----------CTTSBCHHHHHHHHHHTSEEEE
T ss_pred CCCCCCCCCCCCHHHHHCCCCCEEEEEEC----------CCCEECHHHHHHHHHCCCCEEE
T ss_conf 55421123533699994176880999946----------8755868999999876983089
No 443
>>2rex_B RHO-related GTP-binding protein RHO6; complex, structural genomics consortium, SGC, GTPase, GNP, plexin, effector domain, alternative splicing; HET: GNP; 2.30A {Homo sapiens} PDB: 2cls_A* (B:)
Probab=47.28 E-value=7.6 Score=18.54 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=16.9
Q ss_pred CCCCEEEEEEECCCCCCCCCCC
Q ss_conf 7787027998335431112224
Q gi|254780826|r 215 KEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 215 ~~~~d~alfFGLSGTGKTTLS~ 236 (509)
.+..--.+|.|-+|.|||+|-.
T Consensus 7 ~~~~~KivivG~~~vGKTsLi~ 28 (197)
T 2rex_B 7 VVARCKLVLVGDVQCGKTAMLQ 28 (197)
T ss_dssp ---CEEEEEECSTTSSHHHHHH
T ss_pred CCEEEEEEEECCCCCCHHHHHH
T ss_conf 8427899999999979889999
No 444
>>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 1xcg_B 1tx4_B* 1kmq_A* 1dpf_A* (A:)
Probab=47.02 E-value=5.4 Score=19.55 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=15.1
Q ss_pred EEEEEECCCCCCCCCCC
Q ss_conf 27998335431112224
Q gi|254780826|r 220 VALFFGLSGTGKTTLSA 236 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~ 236 (509)
-.++.|.+|.|||+|-.
T Consensus 27 KivilG~~~VGKTSli~ 43 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLI 43 (201)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
T ss_conf 79999999978899999
No 445
>>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} (A:)
Probab=46.93 E-value=7.6 Score=18.55 Aligned_cols=32 Identities=31% Similarity=0.422 Sum_probs=21.8
Q ss_pred EEEEE-ECCCCCCCCCCCC--------CCCEEEECCCEEEC
Q ss_conf 27998-3354311122247--------88613303110215
Q gi|254780826|r 220 VALFF-GLSGTGKTTLSAS--------VDRFLIGDDEHGWS 251 (509)
Q Consensus 220 ~alfF-GLSGTGKTTLS~d--------~~r~LigDDehgW~ 251 (509)
+.+|+ +=-|.||||+++. .+|.|+.|+....+
T Consensus 4 vI~v~s~KGGvGKTT~a~nLA~~LA~~g~kvlliD~d~~~~ 44 (237)
T 1g3q_A 4 IISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMA 44 (237)
T ss_dssp EEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSC
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 89998999998399999999999997799889997999999
No 446
>>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} (A:150-349)
Probab=46.91 E-value=8.9 Score=18.09 Aligned_cols=19 Identities=37% Similarity=0.555 Sum_probs=16.2
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
-.+.++-|..|.||||..+
T Consensus 8 ~~viii~G~tG~GKTT~ip 26 (200)
T 2og2_A 8 PAVIMIVGVNGGGKTTSLG 26 (200)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CEEEEEECCCCHHHHHHHH
T ss_conf 5699970553136677899
No 447
>>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} (A:93-292)
Probab=46.74 E-value=8.9 Score=18.09 Aligned_cols=19 Identities=37% Similarity=0.555 Sum_probs=16.2
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
-.+.++-|..|.||||..+
T Consensus 8 ~~viii~G~tG~GKTT~ip 26 (200)
T 3b9q_A 8 PAVIMIVGVNGGGKTTSLG 26 (200)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred CEEEEECCCCCCCCHHHHH
T ss_conf 1699961665554115799
No 448
>>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} (A:)
Probab=46.33 E-value=6.7 Score=18.91 Aligned_cols=18 Identities=39% Similarity=0.505 Sum_probs=15.1
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
--.++.|..|+|||||-.
T Consensus 9 ~ki~iiG~~~vGKTsll~ 26 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMH 26 (182)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
T ss_conf 699999999969899999
No 449
>>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding site, hydrolase; 3.20A {Spinacia oleracea} (A:95-371)
Probab=45.82 E-value=4.4 Score=20.13 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=17.3
Q ss_pred EEEEEEECCCCCCCCCCCCC
Q ss_conf 02799833543111222478
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSASV 238 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d~ 238 (509)
...++||-+|+|||||..+-
T Consensus 70 Qr~~I~g~~g~GKT~Ll~~i 89 (277)
T 1fx0_A 70 QRELIIGDRQTGKTAVATDT 89 (277)
T ss_dssp CBCBEEESSSSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
T ss_conf 45551358999677899998
No 450
>>1xew_X SMC protein; structural maintenance of chromosomes, ABC-atpases, condensin, cohesin, cell cycle; 2.00A {Pyrococcus furiosus} (X:1-139)
Probab=45.52 E-value=9.7 Score=17.83 Aligned_cols=20 Identities=20% Similarity=0.536 Sum_probs=16.1
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
....++.|.-|+||||+-..
T Consensus 26 ~~~nvi~G~NGsGKStil~A 45 (139)
T 1xew_X 26 KGFTAIVGANGSGKSNIGDA 45 (139)
T ss_dssp SSEEEEEECTTSSSHHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHH
T ss_conf 98479989888873439898
No 451
>>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} (A:)
Probab=45.43 E-value=13 Score=17.10 Aligned_cols=41 Identities=27% Similarity=0.360 Sum_probs=24.7
Q ss_pred HHHCCCCCEEEEECCCCCC-CCCCEEEEEEECCCCCCCCCCC
Q ss_conf 8624107879931245347-7787027998335431112224
Q gi|254780826|r 196 NHIFPERGIMPMHCSINMD-KEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 196 ny~lp~~g~lpmHcsan~~-~~~~d~alfFGLSGTGKTTLS~ 236 (509)
...-+..+..+|--..... ....--.++.|-+|.|||+|-.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~KivivGd~~VGKTsli~ 47 (192)
T 2b6h_A 6 HHHHHSSGLVPRGSLFSRIFGKKQMRILMVGLDAAGKTTILY 47 (192)
T ss_dssp -----------CCCGGGGTTTTSCEEEEEEESTTSSHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHCCCCEEEEEEECCCCCCHHHHHH
T ss_conf 454435676848512766627875899999999988899999
No 452
>>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor binding domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* (A:119-301)
Probab=45.35 E-value=10 Score=17.70 Aligned_cols=49 Identities=22% Similarity=0.253 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 15683153899999998819809998167468876887320788999999999849602
Q gi|254780826|r 391 MPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIK 449 (509)
Q Consensus 391 ~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~ 449 (509)
+|+.+.-+.-+=++.++.-+-.++||||| |=++=.+.+++++.-+|.+.
T Consensus 105 ~plt~~T~~li~~~~l~~mk~ga~liN~~----------Rg~ivd~~aL~~aL~~g~i~ 153 (183)
T 3ba1_A 105 CPLTPETTHIINREVIDALGPKGVLINIG----------RGPHVDEPELVSALVEGRLG 153 (183)
T ss_dssp SCCCGGGTTCBCHHHHHHHCTTCEEEECS----------CGGGBCHHHHHHHHHHTSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCC----------CCCCHHHHHHHHHHHCCEEE
T ss_conf 79983101356899999976555654325----------53100115566676449077
No 453
>>2qmo_A Dethiobiotin synthetase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.47A {Helicobacter pylori 26695} (A:)
Probab=45.23 E-value=10 Score=17.66 Aligned_cols=29 Identities=14% Similarity=0.045 Sum_probs=19.0
Q ss_pred EEEEEEE-CCCCCCCCCCCC--------CCCEEEECCC
Q ss_conf 0279983-354311122247--------8861330311
Q gi|254780826|r 219 DVALFFG-LSGTGKTTLSAS--------VDRFLIGDDE 247 (509)
Q Consensus 219 d~alfFG-LSGTGKTTLS~d--------~~r~LigDDe 247 (509)
.+..|++ -.|+||||+|+. ..|.|+-|-.
T Consensus 2 k~I~v~s~kGGvGKTTvs~~LA~~La~~g~kVl~id~D 39 (220)
T 2qmo_A 2 HXLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPI 39 (220)
T ss_dssp CEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECCE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 88999879999749999999999999789969998861
No 454
>>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} (A:)
Probab=45.12 E-value=7.2 Score=18.71 Aligned_cols=18 Identities=39% Similarity=0.514 Sum_probs=15.2
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
--.++.|.+|.|||+|-.
T Consensus 9 ~KivliGd~gVGKTSLi~ 26 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMN 26 (207)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
T ss_conf 699999989909999999
No 455
>>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} (A:1-102,A:185-277)
Probab=45.03 E-value=6.8 Score=18.88 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=15.2
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
...+..|..|||||+...
T Consensus 16 ~~~lV~g~~GsGKT~~~~ 33 (195)
T 1uaa_A 16 GPCLVLAGAGSGKTRVIT 33 (195)
T ss_dssp SEEEECCCTTSCHHHHHH
T ss_pred CCEEEEEECCHHHHHHHH
T ss_conf 898999808447999999
No 456
>>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} (A:)
Probab=44.87 E-value=7.3 Score=18.66 Aligned_cols=18 Identities=39% Similarity=0.445 Sum_probs=15.4
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
--.++.|..|+|||+|-.
T Consensus 11 ~Ki~iiG~~~vGKTsli~ 28 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLV 28 (180)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
T ss_conf 789999989909899999
No 457
>>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} (A:101-288)
Probab=44.69 E-value=12 Score=17.29 Aligned_cols=50 Identities=18% Similarity=0.186 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 156831538999999988198099981674688768873207889999999998496024
Q gi|254780826|r 391 MPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKS 450 (509)
Q Consensus 391 ~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~~ 450 (509)
+|+.|.-+.-+=.+.++.-+-..+|||+| |=++=.+.++++|..+|.+..
T Consensus 105 lplt~~T~~li~~~~l~~m~~~a~lvN~a----------Rg~ivde~aL~~aL~~g~i~~ 154 (188)
T 1sc6_A 105 VPENPSTKNXXGAKEISLXKPGSLLINAS----------RGTVVDIPALADALASKHLAG 154 (188)
T ss_dssp CCSSTTTTTCBCHHHHHHSCTTEEEEECS----------CSSSBCHHHHHHHHHTTSEEE
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCEEEECC----------CCCEECHHHHHHHHHCCCCCE
T ss_conf 78885663515899997469986999437----------776565899999975176663
No 458
>>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.47A {Synechocystis SP} (A:)
Probab=44.59 E-value=4.8 Score=19.88 Aligned_cols=16 Identities=31% Similarity=0.229 Sum_probs=11.0
Q ss_pred EEEECCCCCCCCCCCC
Q ss_conf 9983354311122247
Q gi|254780826|r 222 LFFGLSGTGKTTLSAS 237 (509)
Q Consensus 222 lfFGLSGTGKTTLS~d 237 (509)
++=+==|.||||++..
T Consensus 5 v~n~KGGVGKTT~a~n 20 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVH 20 (209)
T ss_dssp EEESSTTSSHHHHHHH
T ss_pred EECCCCCHHHHHHHHH
T ss_conf 9879997179999999
No 459
>>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Ralstonia solanacearum} (A:108-302)
Probab=44.38 E-value=4.8 Score=19.90 Aligned_cols=49 Identities=14% Similarity=0.097 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 15683153899999998819809998167468876887320788999999999849602
Q gi|254780826|r 391 MPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIK 449 (509)
Q Consensus 391 ~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~ 449 (509)
+|+.+.-+.-+=.+.++.-+-.++||||| |-++=.+.++++|+.+|.+.
T Consensus 116 ~plt~~T~~~i~~~~l~~mk~~~~lIN~~----------Rg~ivde~aL~~aL~~g~i~ 164 (195)
T 3gg9_A 116 LRLNDETRSIITVADLTRMKPTALFVNTS----------RAELVEENGMVTALNRGRPG 164 (195)
T ss_dssp CCCSTTTTTCBCHHHHTTSCTTCEEEECS----------CGGGBCTTHHHHHHHHTSSS
T ss_pred HHCCCCCCEEEEHHHHCCCCCCEEEEECC----------CCCCCCHHHHHHHHHCCCCC
T ss_conf 11020123255411232568814899537----------76432349899998649843
No 460
>>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 2.07A {Thermus thermophilus HB8} (A:158-334)
Probab=43.72 E-value=7.8 Score=18.48 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=13.9
Q ss_pred EEEEECCCCCCCCCCC
Q ss_conf 7998335431112224
Q gi|254780826|r 221 ALFFGLSGTGKTTLSA 236 (509)
Q Consensus 221 alfFGLSGTGKTTLS~ 236 (509)
.++.|.++.|||||.-
T Consensus 3 V~iiG~~~vGKSsL~n 18 (177)
T 1udx_A 3 VGLVGYPNAGKSSLLA 18 (177)
T ss_dssp EEEECCGGGCHHHHHH
T ss_pred EEEEEECCCCCHHHHH
T ss_conf 9999726788565998
No 461
>>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.73A {Homo sapiens} (A:)
Probab=43.61 E-value=9.4 Score=17.94 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=17.3
Q ss_pred CCCEEEEEEECCCCCCCCCCCC
Q ss_conf 7870279983354311122247
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d 237 (509)
...--.++.|-+|.|||+|-..
T Consensus 18 ~~~~KivliGd~~vGKTSLi~r 39 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVS 39 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
T ss_conf 9972899999999599999999
No 462
>>2hje_A Autoinducer 2 sensor kinase/phosphatase LUXQ; PER/ARNT/simple-minded (PAS) fold, autoinducer-2 (AI-2), quorum sensing, histidine sensor kinase; 1.70A {Vibrio harveyi} (A:61-144)
Probab=43.41 E-value=13 Score=17.03 Aligned_cols=33 Identities=15% Similarity=0.429 Sum_probs=24.6
Q ss_pred CCCCCEEECCCCCCCCCCCCC-CCC---CCHHHHHHHHHHH
Q ss_conf 713223616886544345767-875---8889999999999
Q gi|254780826|r 50 SAFDKFIVRDSHTENDVFWEN-NKY---ISPADFDTLKADM 86 (509)
Q Consensus 50 SPkDKfIV~d~~t~d~I~Wg~-N~~---i~~e~F~~L~~~v 86 (509)
||.=||| ++.+.|-|+| |.. +++...+.|-++|
T Consensus 1 tPDfRFi----s~~~~i~WdDGNa~FYGi~~~~L~~l~~kv 37 (84)
T 2hje_A 1 TPEFRFL----TDHKGIIWDDGNAHFYGVNDLILDSLANRV 37 (84)
T ss_dssp CCSEEEE----ECSSSEEEECSGGGGGTCCHHHHHHHHHHC
T ss_pred CCCEEEE----ECCCCCEEECCCCCCCCCCHHHHHHHCCCC
T ss_conf 9756998----528987798898631054466775406666
No 463
>>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, hydrolase; HET: GDP; 1.75A {Pyrococcus abyssi} (A:)
Probab=42.95 E-value=8.8 Score=18.14 Aligned_cols=19 Identities=42% Similarity=0.782 Sum_probs=15.7
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-+.++-|-.|.|||||...
T Consensus 15 ~~i~i~G~~gaGKTTl~~~ 33 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGE 33 (262)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred CEEEEEECCCCHHHHHHHH
T ss_conf 8899993899839999999
No 464
>>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} (A:145-334)
Probab=42.14 E-value=12 Score=17.29 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 156831538999999988198099981674688768873207889999999998496024
Q gi|254780826|r 391 MPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKS 450 (509)
Q Consensus 391 ~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~~ 450 (509)
+|+.+.-..-+=.+.++.-+-.++||||| |=++=.+-++++|+-+|.+..
T Consensus 111 ~plt~~T~~lin~~~l~~mk~ga~lVN~~----------RG~lvde~aL~~aL~~g~i~g 160 (190)
T 2nac_A 111 CPLHPETEHMINDETLKLFKRGAYIVNTA----------RGKLCDRDAVARALESGRLAG 160 (190)
T ss_dssp SCCCTTTTTCBSHHHHTTSCTTEEEEECS----------CGGGBCHHHHHHHHHTTSEEE
T ss_pred HCCCCCCCCCCCHHHHHCCCCCEEEEECC----------CCCEECHHHHHHHHHCCCEEE
T ss_conf 12565440226767774449972999816----------886467999998887097248
No 465
>>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} (A:99-285)
Probab=42.06 E-value=9.2 Score=18.00 Aligned_cols=19 Identities=32% Similarity=0.576 Sum_probs=16.4
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
.+....|+.|-|||||...
T Consensus 50 ~vI~I~G~gGiGKTtLa~~ 68 (187)
T 1z6t_A 50 GWVTIHGMAGCGKSVLAAE 68 (187)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 5799889986769999999
No 466
>>3kbo_A Glyoxylate/hydroxypyruvate reductase A; NADP, cytoplasm, NAD, structural genomics; HET: NDP NDB EPE; 2.14A {Salmonella enterica subsp} (A:96-280)
Probab=42.00 E-value=14 Score=16.69 Aligned_cols=49 Identities=18% Similarity=0.219 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 15683153899999998819809998167468876887320788999999999849602
Q gi|254780826|r 391 MPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIK 449 (509)
Q Consensus 391 ~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~ 449 (509)
+|+.|.-..-+=.+.++.-+-..+|||+| |=++=...+++++.-+|.+.
T Consensus 106 ~plt~~T~~li~~~~l~~mk~~a~liN~a----------RG~ivd~~aL~~aL~~g~i~ 154 (185)
T 3kbo_A 106 LPNTAQTVGIINSELLDQLPDGAYVLNLA----------RGVHVQEADLLAALDSGKLK 154 (185)
T ss_dssp CCCCTTTTTCBSHHHHTTSCTTEEEEECS----------CGGGBCHHHHHHHHHHSSEE
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCC----------CCCCCCHHHHHHHHHHCCCC
T ss_conf 87544553225899999740113321047----------41247899999999839963
No 467
>>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus HB8} (A:97-279)
Probab=41.97 E-value=7.7 Score=18.49 Aligned_cols=49 Identities=22% Similarity=0.217 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 15683153899999998819809998167468876887320788999999999849602
Q gi|254780826|r 391 MPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIK 449 (509)
Q Consensus 391 ~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~ 449 (509)
+|+.+.-+.-+=.+.++.-+-..+||||| |=++=.+.++++|.-+|.|.
T Consensus 105 ~plt~~T~~li~~~~l~~mk~ga~lIN~~----------RG~ivde~aL~~aL~~g~l~ 153 (183)
T 2cuk_A 105 TPLTPETHRLLNRERLFAMKRGAILLNTA----------RGALVDTEALVEALRGHLFG 153 (183)
T ss_dssp CCCCTTTTTCBCHHHHTTSCTTCEEEECS----------CGGGBCHHHHHHHHTTTSSE
T ss_pred CCCCHHHHCCCCHHHHHCCCCCCEEEECC----------CCHHHHHHHHHHHHHCCEEE
T ss_conf 88983430653799984135895799645----------62222038999986187547
No 468
>>1vp8_A Hypothetical protein AF0103; NP_068944.1, structural genomics, JCSG, joint center for structural genomics, PSI; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus dsm 4304} (A:)
Probab=41.71 E-value=9.2 Score=17.99 Aligned_cols=14 Identities=14% Similarity=0.283 Sum_probs=9.9
Q ss_pred EEECCCCCCCCCCC
Q ss_conf 98335431112224
Q gi|254780826|r 223 FFGLSGTGKTTLSA 236 (509)
Q Consensus 223 fFGLSGTGKTTLS~ 236 (509)
..|..||||||-++
T Consensus 161 ~IaItGTGKTTTTs 174 (201)
T 1vp8_A 161 VVAVGGRSRGADTA 174 (201)
T ss_dssp EEEEECSSSSCCEE
T ss_pred EEEECCCCCCCCEE
T ss_conf 89984555777369
No 469
>>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} (A:)
Probab=41.69 E-value=8.7 Score=18.14 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=15.2
Q ss_pred EEEEEECCCCCCCCCCCC
Q ss_conf 279983354311122247
Q gi|254780826|r 220 VALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d 237 (509)
-.++.|-+|.|||+|-..
T Consensus 10 KvvivGd~~VGKTsli~r 27 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFR 27 (203)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
T ss_conf 999999999198999999
No 470
>>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} (A:)
Probab=41.49 E-value=15 Score=16.64 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=20.4
Q ss_pred CEEEEEEECC-CCCCCCCCCC--------CCCEEEECCC
Q ss_conf 7027998335-4311122247--------8861330311
Q gi|254780826|r 218 EDVALFFGLS-GTGKTTLSAS--------VDRFLIGDDE 247 (509)
Q Consensus 218 ~d~alfFGLS-GTGKTTLS~d--------~~r~LigDDe 247 (509)
..+..|.|.. |.||||++.. ..|.|+-|-.
T Consensus 104 ~~vI~v~s~kgGvGKTtia~~LA~~La~~g~~vlliD~D 142 (299)
T 3cio_A 104 NNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDAD 142 (299)
T ss_dssp CCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 839999899979988999999999999779958998458
No 471
>>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} (A:)
Probab=41.29 E-value=9.7 Score=17.84 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=15.9
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
--.++.|.+|.|||+|-..
T Consensus 9 ~KiviiGd~~VGKTSLi~r 27 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLR 27 (199)
T ss_dssp EEEEEEECTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 3899999599699999999
No 472
>>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A* (A:86-365)
Probab=41.27 E-value=5.4 Score=19.52 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=16.6
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
--.++||-+|+|||+|..+
T Consensus 68 Qr~~I~g~~G~GKT~L~~~ 86 (280)
T 2c61_A 68 QKLPIFSASGLPHNEIALQ 86 (280)
T ss_dssp CBCCEEECTTSCHHHHHHH
T ss_pred CEEECCCCCCCCCCHHHHH
T ss_conf 1210246756766489999
No 473
>>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A (A:129-302)
Probab=40.98 E-value=9.1 Score=18.03 Aligned_cols=18 Identities=39% Similarity=0.506 Sum_probs=15.7
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
-..+++|-+||||+++..
T Consensus 25 ~pVlI~Ge~GtGK~~~A~ 42 (174)
T 3dzd_A 25 APVLITGESGTGKEIVAR 42 (174)
T ss_dssp SCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCCCHHHHHH
T ss_conf 958998899858899999
No 474
>>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding site, hydrolase; 3.20A {Spinacia oleracea} (B:378-498)
Probab=40.97 E-value=17 Score=16.16 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=34.4
Q ss_pred HHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 9998819809998167468876887320788999999999849602466066
Q gi|254780826|r 404 DYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRV 455 (509)
Q Consensus 404 ~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~~~~~~~ 455 (509)
.||+.+=++-+-|---.+|-+ |+..+|+.|-.=..+|++|+.++.+=..
T Consensus 48 RklqrFLsQpF~vae~fTg~~---G~~V~l~dTi~~f~~Il~G~~D~~pE~a 96 (121)
T 1fx0_B 48 RKIERFLSQPFFVAEVFTGSP---GKYVGLAETIRGFQLILSGELDSLPEQA 96 (121)
T ss_dssp HHHHHHTCCCCSSCTTTSCSC---CCCCCHHHHHHHHHTTTTTTTSSSCGGG
T ss_pred HHHHHHHCCCCHHHHHHCCCC---CEEECHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 999998489970246550798---7671499999999999876552286888
No 475
>>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* (A:)
Probab=40.49 E-value=10 Score=17.74 Aligned_cols=16 Identities=31% Similarity=0.744 Sum_probs=10.2
Q ss_pred EEEEEECCCCCCCCCC
Q ss_conf 2799833543111222
Q gi|254780826|r 220 VALFFGLSGTGKTTLS 235 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS 235 (509)
.++..|.+|+|||++-
T Consensus 26 ~v~LvG~~GvGKtaiv 41 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIA 41 (359)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
T ss_conf 7689849999899999
No 476
>>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, structural genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* (A:99-290)
Probab=40.33 E-value=12 Score=17.33 Aligned_cols=49 Identities=24% Similarity=0.224 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 15683153899999998819809998167468876887320788999999999849602
Q gi|254780826|r 391 MPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIK 449 (509)
Q Consensus 391 ~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~ 449 (509)
+|+.+.-..-+=.+.++.-+-..+|||+| |=++=...++++|.-+|.+.
T Consensus 114 ~Plt~~T~~li~~~~l~~mk~ga~liN~~----------RG~lvd~~aL~~aL~~g~i~ 162 (192)
T 2dbq_A 114 VPLTRETYHLINEERLKLXKKTAILINIA----------RGKVVDTNALVKALKEGWIA 162 (192)
T ss_dssp CCCCTTTTTCBCHHHHHHSCTTCEEEECS----------CGGGBCHHHHHHHHHHTSSS
T ss_pred CCCCHHHHCCCCHHHHHHHCCCEEEEEEC----------CCCCCCHHHHHHHHHCCCEE
T ss_conf 78962310560999996248993999927----------98654268999999739652
No 477
>>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} (A:)
Probab=40.28 E-value=12 Score=17.29 Aligned_cols=31 Identities=19% Similarity=0.147 Sum_probs=19.8
Q ss_pred EEECCCCCC-CCCCEEEEEEECCCCCCCCCCC
Q ss_conf 931245347-7787027998335431112224
Q gi|254780826|r 206 PMHCSINMD-KEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 206 pmHcsan~~-~~~~d~alfFGLSGTGKTTLS~ 236 (509)
||-.++-.. ....--.++.|-+|.|||+|-.
T Consensus 2 ~m~~~~~~~~~~~~~KivivGd~~VGKTSli~ 33 (179)
T 1z0f_A 2 PLGSATAPYNYSYIFKYIIIGDMGVGKSCLLH 33 (179)
T ss_dssp ---------CCSEEEEEEEECSTTSSHHHHHH
T ss_pred CCCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
T ss_conf 98778998877767899999999919899999
No 478
>>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP- binding, coiled coil, cytoplasm, disease mutation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* (A:1-72)
Probab=40.17 E-value=9.2 Score=18.00 Aligned_cols=18 Identities=39% Similarity=0.521 Sum_probs=14.7
Q ss_pred EEEEEECCCCCCCCCCCC
Q ss_conf 279983354311122247
Q gi|254780826|r 220 VALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d 237 (509)
-.++.|-+|.|||+|...
T Consensus 4 Ki~lvGd~~vGKTsl~~~ 21 (72)
T 2zej_A 4 KLXIVGNTGSGKTTLLQQ 21 (72)
T ss_dssp EEEEESCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
T ss_conf 899999599779999999
No 479
>>3fkq_A NTRC-like two-domain protein; RER070207001320, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: ATP 2PE; 2.10A {Eubacterium rectale} (A:139-373)
Probab=39.41 E-value=15 Score=16.61 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=22.0
Q ss_pred EEEEEE-ECCCCCCCCCCCC--------CCCEEEECCCEEEC
Q ss_conf 027998-3354311122247--------88613303110215
Q gi|254780826|r 219 DVALFF-GLSGTGKTTLSAS--------VDRFLIGDDEHGWS 251 (509)
Q Consensus 219 d~alfF-GLSGTGKTTLS~d--------~~r~LigDDehgW~ 251 (509)
.+.+|. +=.|+||||+++. ..|.|+-|-....+
T Consensus 6 ~vI~v~s~KGGvGKTT~a~~LA~~la~~G~~VlliD~D~~~~ 47 (235)
T 3fkq_A 6 SVVIFTSPCGGVGTSTVAAACAIAHANXGKKVFYLNIEQCGT 47 (235)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECCTTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 899998999984599999999999995899399995899999
No 480
>>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A (A:1-168,A:240-278)
Probab=39.38 E-value=12 Score=17.32 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=14.7
Q ss_pred EEEEEEECCCCCCCCCC
Q ss_conf 02799833543111222
Q gi|254780826|r 219 DVALFFGLSGTGKTTLS 235 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS 235 (509)
-...++|.+++|||||.
T Consensus 14 rnIaIvG~~nsGKSTLl 30 (207)
T 2h5e_A 14 RTFAIISHPDAGKTTIT 30 (207)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
T ss_conf 78999968998999999
No 481
>>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosynthesis, structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} (A:98-282)
Probab=39.22 E-value=12 Score=17.28 Aligned_cols=49 Identities=29% Similarity=0.327 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 15683153899999998819809998167468876887320788999999999849602
Q gi|254780826|r 391 MPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIK 449 (509)
Q Consensus 391 ~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~ 449 (509)
+|+.|.-+.-+=.+.++.-+-..+||||| |=++=.+-+++++..+|++.
T Consensus 107 ~plt~~T~~lin~~~l~~mk~~a~liN~~----------RG~ivd~~aL~~aL~~g~i~ 155 (185)
T 1ygy_A 107 LPKTPETAGLIDKEALAKTKPGVIIVNAA----------RGGLVDEAALADAITGGHVR 155 (185)
T ss_dssp CCCSTTTTTCBCHHHHTTSCTTEEEEECS----------CTTSBCHHHHHHHHHTSSEE
T ss_pred CCCCCCCCCEECHHHHHCCCCCCEEEECC----------CCCEECHHHHHHHHHCCCCE
T ss_conf 68866302709799981789998788425----------76567689999898649850
No 482
>>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infectious disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} (A:112-299)
Probab=39.14 E-value=24 Score=15.25 Aligned_cols=49 Identities=18% Similarity=0.176 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 15683153899999998819809998167468876887320788999999999849602
Q gi|254780826|r 391 MPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIK 449 (509)
Q Consensus 391 ~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~ 449 (509)
+|+.|.-+.-+=.+.++.-+-.++|||+| |-++=...+++++..+|.+.
T Consensus 105 ~plt~~T~~li~~~~~~~mk~~~~liN~~----------Rg~ivd~~aL~~aL~~g~i~ 153 (188)
T 3k5p_A 105 VPSSKSTSKLITEAKLRKMKKGAFLINNA----------RGSDVDLEALAKVLQEGHLA 153 (188)
T ss_dssp CCC-----CCBCHHHHHHSCTTEEEEECS----------CTTSBCHHHHHHHHHTTSEE
T ss_pred ECCCCCCCCHHHHHHHHHCCCCCEEEECC----------CCCEECHHHHHHHHHHCCCC
T ss_conf 02111233403499995279998787237----------65520299999999729730
No 483
>>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} (A:1-234)
Probab=39.07 E-value=10 Score=17.71 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=14.2
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
-..+|.|.||.|||||--
T Consensus 163 ~~i~lvG~sNvGKSSLiN 180 (234)
T 3ec1_A 163 GDVYVVGCTNVGKSTFIN 180 (234)
T ss_dssp SCEEEECCTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
T ss_conf 616986589854889999
No 484
>>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone; HET: MSE; 1.70A {Methylobacterium extorquens AM1} (A:)
Probab=38.83 E-value=11 Score=17.45 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=15.8
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-+..+.|..|.|||||-..
T Consensus 56 ~~V~ivG~pnaGKSTLln~ 74 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDA 74 (337)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCCCHHHHHHH
T ss_conf 4996228999889999999
No 485
>>1x1r_A RAS-related protein M-RAS; GTP-binding, signaling protein; HET: GDP; 1.30A {Mus musculus} (A:)
Probab=38.47 E-value=11 Score=17.61 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=15.3
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
--.++.|-+|.|||+|-.
T Consensus 14 ~KivivGd~~VGKTsLi~ 31 (178)
T 1x1r_A 14 YKLVVVGDGGVGKSALTI 31 (178)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
T ss_conf 799999999909899999
No 486
>>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} (A:1-107,A:194-286)
Probab=38.39 E-value=12 Score=17.20 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=16.2
Q ss_pred EEEEEEECCCCCCCCCCCCC
Q ss_conf 02799833543111222478
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSASV 238 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d~ 238 (509)
...+..|-.|||||+....+
T Consensus 25 ~~~~V~~~tGsGKT~~~~~~ 44 (200)
T 1pjr_A 25 GPLLIMAGAGSGKTRVLTHR 44 (200)
T ss_dssp SCEEEEECTTSCHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHH
T ss_conf 89899983842799999999
No 487
>>3l0i_B RAS-related protein RAB-1A; GEF/GDF-RAB complex, GTP-binding, guanine-nucleotide exchange factor, GDI-displacement factor; 2.85A {Homo sapiens} (B:)
Probab=38.27 E-value=18 Score=16.06 Aligned_cols=26 Identities=31% Similarity=0.285 Sum_probs=18.7
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 34777870279983354311122247
Q gi|254780826|r 212 NMDKEKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 212 n~~~~~~d~alfFGLSGTGKTTLS~d 237 (509)
+..++..--.++.|-+|.|||+|-..
T Consensus 27 ~~~~~~~~Kv~ivG~~~vGKTsli~~ 52 (199)
T 3l0i_B 27 NPEYDYLFKLLLIGDSGVGKSCLLLR 52 (199)
T ss_dssp -CCCSEEEEEEEECCTTSCCTTTTTS
T ss_pred CCCCCEEEEEEEECCCCCCHHHHHHH
T ss_conf 88878898999999999899999999
No 488
>>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} (A:)
Probab=38.07 E-value=20 Score=15.69 Aligned_cols=32 Identities=22% Similarity=-0.036 Sum_probs=21.1
Q ss_pred EEEEEE-CCCCCCCCCCCC--------CCCEEEECCCEEEC
Q ss_conf 279983-354311122247--------88613303110215
Q gi|254780826|r 220 VALFFG-LSGTGKTTLSAS--------VDRFLIGDDEHGWS 251 (509)
Q Consensus 220 ~alfFG-LSGTGKTTLS~d--------~~r~LigDDehgW~ 251 (509)
+..|.| =.|.||||+|+. .+|.|+-|.....+
T Consensus 3 vI~v~s~KGGvGKTtia~~La~~La~~G~~Vl~id~d~~~~ 43 (224)
T 1byi_A 3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGS 43 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSEEESC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHCCC
T ss_conf 29999799995399999999999997799499988431499
No 489
>>1ghp_A Beta-lactamase, penicillinase; hydrolase, antibiotic resistance, beta-lactam hydrolysis, benzylpenicillin, cephaloridine; HET: PNM; 1.76A {Staphylococcus aureus} (A:1-37,A:151-258)
Probab=38.05 E-value=25 Score=15.14 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=8.3
Q ss_pred CCCCCHHHHHHHHHHH
Q ss_conf 8758889999999999
Q gi|254780826|r 71 NKYISPADFDTLKADM 86 (509)
Q Consensus 71 N~~i~~e~F~~L~~~v 86 (509)
|+.|.|...-.|.+++
T Consensus 33 ~~~f~P~d~a~lL~~l 48 (145)
T 1ghp_A 33 DKRFAPAAFGKTLNKL 48 (145)
T ss_dssp TSCEEHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
T ss_conf 9868399999999999
No 490
>>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A (A:106-403)
Probab=37.85 E-value=11 Score=17.41 Aligned_cols=40 Identities=8% Similarity=-0.130 Sum_probs=21.3
Q ss_pred CCCCHHHCCHHHHCC---CHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 989965649766259---9899999999999999999987512
Q gi|254780826|r 468 KGVDRKLLNPRDSWN---DVEAYDQKMRELLLMFENNAEKKQI 507 (509)
Q Consensus 468 ~gv~~~~l~P~~~w~---d~~~Y~~~a~~L~~~F~~Nf~~~~~ 507 (509)
.|.|--.++|+.... -..-..+-.++|++.+.+.|++...
T Consensus 253 ~g~~v~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~ 295 (298)
T 3ez9_A 253 SFDTVISANPQSYPGSAEALKKARTEAERFTKAVFDRIEFVRG 295 (298)
T ss_dssp -----------------CTTHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 5998599799980889999999999999999999999998742
No 491
>>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} (A:)
Probab=37.61 E-value=12 Score=17.23 Aligned_cols=18 Identities=39% Similarity=0.501 Sum_probs=15.4
Q ss_pred EEEEEECCCCCCCCCCCC
Q ss_conf 279983354311122247
Q gi|254780826|r 220 VALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d 237 (509)
-.++.|.+|.|||+|-..
T Consensus 12 KiviiGd~~VGKTsli~r 29 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQ 29 (186)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
T ss_conf 999999899188999999
No 492
>>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* (A:)
Probab=37.58 E-value=16 Score=16.33 Aligned_cols=41 Identities=27% Similarity=0.329 Sum_probs=24.8
Q ss_pred CEEEEEEEC-CCCCCCCCCCC--------CCCEEEEC-CCEEECCCCCCCC
Q ss_conf 702799833-54311122247--------88613303-1102156741234
Q gi|254780826|r 218 EDVALFFGL-SGTGKTTLSAS--------VDRFLIGD-DEHGWSKEGVFNF 258 (509)
Q Consensus 218 ~d~alfFGL-SGTGKTTLS~d--------~~r~LigD-DehgW~d~gvfn~ 258 (509)
..+.+|-+. .|.||||+++. .+|.|+-| |-..++-...++.
T Consensus 82 ~~vi~v~s~kgG~GKTtia~nLA~~la~~g~~VlliD~D~~~~~~~~~~~~ 132 (271)
T 3bfv_A 82 VQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNL 132 (271)
T ss_dssp CCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTC
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHCCC
T ss_conf 859999789989988999999999999679948998558999866776177
No 493
>>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION transport, hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D (B:80-367)
Probab=37.56 E-value=6.4 Score=19.02 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=17.6
Q ss_pred EEEEEEECCCCCCCCCCCCCC
Q ss_conf 027998335431112224788
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSASVD 239 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d~~ 239 (509)
--.++||-+|+|||+|..+=-
T Consensus 69 Qr~~Ifg~~G~GKT~l~~~i~ 89 (288)
T 3gqb_B 69 QKLPIFSGSGLPANEIAAQIA 89 (288)
T ss_dssp CBCCEEEETTSCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHH
T ss_conf 703345788878115678887
No 494
>>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosphate ION, oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} (A:91-257)
Probab=37.51 E-value=25 Score=15.08 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=34.5
Q ss_pred HHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCC
Q ss_conf 99999988198099981674688768873207889999999998496024660667887742
Q gi|254780826|r 401 ILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFS 462 (509)
Q Consensus 401 ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~~~~~~~~~~f~l~ 462 (509)
+=.+.++.-+-.++||||| |=++-.+-++++|.-+|++. .--.+.|.-+
T Consensus 99 i~~~~l~~mk~g~~liN~a----------Rg~ivd~~aL~~aL~~g~i~---~a~lDV~~~E 147 (167)
T 2o4c_A 99 LDEPRLAALRPGTWLVNAS----------RGAVVDNQALRRLLEGGADL---EVALDVWEGE 147 (167)
T ss_dssp BCHHHHHTSCTTEEEEECS----------CGGGBCHHHHHHHHHTTCCE---EEEESCCTTT
T ss_pred HHHHHHHHCCCCCEEEECC----------CCCEECHHHHHHHHHHCCCC---CCCCCCCCCC
T ss_conf 7599998579998899547----------77623799999999819986---5425446789
No 495
>>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate acceptor; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* (A:1-167)
Probab=37.26 E-value=16 Score=16.40 Aligned_cols=18 Identities=17% Similarity=0.091 Sum_probs=14.7
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
...++.|..|+||||+-.
T Consensus 29 ~l~~i~G~mgsGKTt~L~ 46 (167)
T 2j9r_A 29 WIEVICGSMFSGKSEELI 46 (167)
T ss_dssp EEEEEECSTTSCHHHHHH
T ss_pred EEEEEEECCCCHHHHHHH
T ss_conf 799999050788999999
No 496
>>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase; HET: AP5; 1.63A {Saccharomyces cerevisiae} (A:1-122,A:185-220)
Probab=36.97 E-value=11 Score=17.55 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=15.2
Q ss_pred EEEEEECCCCCCCCCCCC
Q ss_conf 279983354311122247
Q gi|254780826|r 220 VALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d 237 (509)
-.+++|..|.||||++.-
T Consensus 6 rI~I~GpPGSGKsT~a~~ 23 (158)
T 1aky_A 6 RMVLIGPPGAGKGTQAPN 23 (158)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
T ss_conf 899989999987999999
No 497
>>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* (A:)
Probab=36.80 E-value=12 Score=17.33 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=15.7
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
--.++.|..|.|||||-..
T Consensus 7 ~ki~iiG~~~vGKSsli~~ 25 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANI 25 (192)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 8999999799499999999
No 498
>>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} (A:92-281)
Probab=36.78 E-value=18 Score=16.13 Aligned_cols=87 Identities=16% Similarity=0.135 Sum_probs=52.0
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCC--------CCEEEHHHCC-----CCCCCCHHHHHHHHHHHHHHHCCEEEEEECCC
Q ss_conf 8899999742324566620001256--------5312100105-----00156831538999999988198099981674
Q gi|254780826|r 354 EKAVYYFLSGYTAKVAGTEKGVLKP--------EATFSACFGA-----PFMPRDPVQYGNILKDYIVKYCVDCWLVNTGW 420 (509)
Q Consensus 354 ~qa~~~F~sGyT~k~agte~g~~ep--------~~tfs~cFg~-----PF~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw 420 (509)
.|+..-.+.++-+++.+..+....+ ...+..++.. --+|+.|.-+.-+=++.++.-+-.++|||+|
T Consensus 58 G~~va~~l~~fG~~V~~~~~~~~~~~~~~~~~~~~~l~~ll~~aD~v~~~~p~t~~T~~li~~~~l~~mk~~~~lvN~~- 136 (190)
T 3evt_A 58 GQSLAAKASALGMHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIG- 136 (190)
T ss_dssp HHHHHHHHHHTTCEEEEEESSCCCCTTCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECS-
T ss_pred CCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEHHHHHCCCCCCEEEEEC-
T ss_conf 4422001025420573147875433221111344320011223221112345554431013154432012343035305-
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 688768873207889999999998496024
Q gi|254780826|r 421 TAGSYGEGYRMPLSVTRALLKAIFDNSIKS 450 (509)
Q Consensus 421 ~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~~ 450 (509)
|=++=.+.+++++.-+|.+..
T Consensus 137 ---------RG~ivd~~aL~~aL~~g~i~~ 157 (190)
T 3evt_A 137 ---------RGPAVDTTALMTALDHHQLSM 157 (190)
T ss_dssp ---------CGGGBCHHHHHHHHHTTSCSE
T ss_pred ---------CCCCCCHHHHHHHHHCCCCCC
T ss_conf ---------775421067776443042100
No 499
>>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, serine metabolism; HET: NAD; 1.70A {Homo sapiens} (A:121-305)
Probab=36.68 E-value=13 Score=17.11 Aligned_cols=49 Identities=20% Similarity=0.189 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 15683153899999998819809998167468876887320788999999999849602
Q gi|254780826|r 391 MPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIK 449 (509)
Q Consensus 391 ~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~ 449 (509)
+|+.|.-+.-+=.+.++.-+-.++||||| |=++=.+-+++++.-+|.+.
T Consensus 107 ~plt~~T~~li~~~~l~~mk~g~~liN~~----------RG~ivd~~aL~~aL~~g~i~ 155 (185)
T 2g76_A 107 TPLLPSTTGLLNDNTFAQCKKGVRVVNCA----------RGGIVDEGALLRALQSGQCA 155 (185)
T ss_dssp CCCCTTTTTSBCHHHHTTSCTTEEEEECS----------CTTSBCHHHHHHHHHHTSEE
T ss_pred CCCCCCCCCCCCHHHHHCCCCCCEEEECC----------HHHHHHHHHHHHHHHCCCEE
T ss_conf 78865442110379972468994899657----------18876417899999749622
No 500
>>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} (A:1-177)
Probab=36.58 E-value=18 Score=16.10 Aligned_cols=18 Identities=39% Similarity=0.534 Sum_probs=15.1
Q ss_pred CEEEEEEECCCCCCCCCC
Q ss_conf 702799833543111222
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS 235 (509)
.-..+|.|.++.||+||-
T Consensus 120 ~~~v~ivG~pNvGKSSLi 137 (177)
T 1puj_A 120 AIRALIIGIPNVGKSTLI 137 (177)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
T ss_conf 605776128855279988
Done!