RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780826|ref|YP_003065239.1| phosphoenolpyruvate
carboxykinase [Candidatus Liberibacter asiaticus str. psy62]
(509 letters)
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine
triphosphate, riken structural genomics/proteomics
initiative, RSGI; 2.00A {Thermus thermophilus HB8} SCOP:
c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*
Length = 529
Score = 603 bits (1557), Expect = e-173
Identities = 250/510 (49%), Positives = 335/510 (65%), Gaps = 7/510 (1%)
Query: 1 MEKFDLEGSSRVYRNLSTSRLYEESIRREKTILTCDGALRALTGQHTGRSAFDKFIVRDS 60
+E + RV+ N + L E ++ R + +L G L T +TGRS DKF+VR+
Sbjct: 4 LEALGIHPKKRVFWNTVSPVLVEHTLLRGEGLLAHHGPLVVDTTPYTGRSPKDKFVVREP 63
Query: 61 HTENDVFW-ENNKYISPADFDTLKADMLDYIKDKDLFLQDLVACPHTKNAISVCVVTQYA 119
E +++W E N+ +P F+ L ++ Y+ ++DL++QDL A + ++V VVT+
Sbjct: 64 EVEGEIWWGEVNQPFAPEAFEALYQRVVQYLSERDLYVQDLYAGADRRYRLAVRVVTESP 123
Query: 120 WHSLFIRNLLKHKEDLGAVPNMMS----LQVVVLPDFSADPNRHGCCSETIIAVDLTAGL 175
WH+LF RN+ G + + VV P F A P R G SE + + L
Sbjct: 124 WHALFARNMFILPRRFGNDDEVEAFVPGFTVVHAPYFQAVPERDGTRSEVFVGISFQRRL 183
Query: 176 ILIGGTSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLS 235
+LI GT YAGEIKKS+FT +N++ P+RG+ PMH S N+ KE DVA+FFGLSGTGKTTLS
Sbjct: 184 VLIVGTKYAGEIKKSIFTVMNYLMPKRGVFPMHASANVGKE-GDVAVFFGLSGTGKTTLS 242
Query: 236 ASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDE 295
+R LIGDDEHGWS++GVFNFEGGCYAK I LS E EP I+ AS +F +LENVVV+
Sbjct: 243 TDPERPLIGDDEHGWSEDGVFNFEGGCYAKVIRLSPEHEPLIYKASNQFEAILENVVVNP 302
Query: 296 CG-IPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAADAFGVLPPVAYLNPE 354
+ D S TENTR++YP+ + N + HP+ + L+ADA+GVLPP+A L+PE
Sbjct: 303 ESRRVQWDDDSKTENTRSSYPIAHLENVVESGVAGHPRAIFFLSADAYGVLPPIARLSPE 362
Query: 355 KAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVDCW 414
+A+YYFLSGYTA+VAGTE+GV +P ATFSACFGAPF+P P Y +L + I K+ +
Sbjct: 363 EAMYYFLSGYTARVAGTERGVTEPRATFSACFGAPFLPMHPGVYARMLGEKIRKHAPRVY 422
Query: 415 LVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPLEVKGVDRKL 474
LVNTGWT G YG GYR PL VTRALLKA ++++VPYR D FGF VPLE GV ++L
Sbjct: 423 LVNTGWTGGPYGVGYRFPLPVTRALLKAALSGALENVPYRRDPVFGFEVPLEAPGVPQEL 482
Query: 475 LNPRDSWNDVEAYDQKMRELLLMFENNAEK 504
LNPR++W D EAYDQ+ R+L +F+ N +K
Sbjct: 483 LNPRETWADKEAYDQQARKLARLFQENFQK 512
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase;
2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Length = 524
Score = 578 bits (1491), Expect = e-165
Identities = 194/503 (38%), Positives = 283/503 (56%), Gaps = 9/503 (1%)
Query: 10 SRVYRNLSTSRLYEESIR-REKTILTCDGALRALTGQHTGRSAFDKFIVRDSHTENDVFW 68
++RNL + L + +++ + + LT GAL ++ TGRS DK IV +V W
Sbjct: 2 PTIHRNLLSPELVQWALKIEKDSRLTARGALAVMSYAKTGRSPLDKRIVDTDDVRENVDW 61
Query: 69 -ENNKYISPADFDTLKADMLDYIKDKD-LFLQDLVACPHTKNAISVCVVTQYAWHSLFIR 126
+ N +S F ++ +++ ++ LF+ D A + + V V T +H+LF+R
Sbjct: 62 GKVNMKLSEESFARVRKIAKEFLDTREHLFVVDCFAGHDERYRLKVRVFTTRPYHALFMR 121
Query: 127 NLLKHKEDLGAVPNMMSLQVVV-LPDFSADPNRHGCCSETIIAVDLTAGLILIGGTSYAG 185
++L V+ + ADP+ G S T +A++ +I GT YAG
Sbjct: 122 DMLIVPTPEELATFGEPDYVIYNAGECKADPSIPGLTSTTCVALNFKTREQVILGTEYAG 181
Query: 186 EIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGD 245
E+KK + T + + P+ + MH S N+ K+ DV +FFGLSGTGKTTLSA R LIGD
Sbjct: 182 EMKKGILTVMFELMPQMNHLCMHASANVGKQ-GDVTVFFGLSGTGKTTLSADPHRNLIGD 240
Query: 246 DEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDE-CGIPNFKDS 304
DEH W+ GVFN EGGCYAK+I L+ +TE +I+ A RFG V EN V+D+ G +F D
Sbjct: 241 DEHVWTDRGVFNIEGGCYAKAIGLNPKTEKDIYDA-VRFGAVAENCVLDKRTGEIDFYDE 299
Query: 305 SVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYYFLSGY 364
S+ +NTR AYPL+ I ++I HPK+VI L DAFGV+PPVA L +A+++F+ GY
Sbjct: 300 SICKNTRVAYPLSHIEGALSKAIAGHPKNVIFLTNDAFGVMPPVARLTSAQAMFWFVMGY 359
Query: 365 TAKVAGTEKGVLK-PEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAG 423
TA V G E G + FS+CFG PF+ R YG L + + K+ WL+NTG+ G
Sbjct: 360 TANVPGVEAGGTRTARPIFSSCFGGPFLVRHATFYGEQLAEKMQKHNSRVWLLNTGYAGG 419
Query: 424 SYGEGY-RMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPLEVKGVDRKLLNPRDSWN 482
G RMPL VTRA++ AI D ++ Y +G +P V V LLNPR +W
Sbjct: 420 RADRGAKRMPLRVTRAIIDAIHDGTLDRTEYEEYPGWGLHIPKYVAKVPEHLLNPRKAWK 479
Query: 483 DVEAYDQKMRELLLMFENNAEKK 505
DV +++ +EL+ MF+ + +
Sbjct: 480 DVRQFNETSKELVAMFQESFSAR 502
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate;
domain closure, nucleotide binding; HET: ATP; 2.20A
{Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Length = 532
Score = 508 bits (1310), Expect = e-144
Identities = 206/517 (39%), Positives = 297/517 (57%), Gaps = 19/517 (3%)
Query: 1 MEKFDLEGSSRVYRNLSTSRLYEESIRR-----EKTILTCDGALRALTGQHTGRSAFDKF 55
+ K+ + G++ + N S L+ + EK +T GA+ +TG +TGRS DKF
Sbjct: 7 LAKYGITGATNIVHNPSHEELFAAETQASLEGFEKGTVTEMGAVNVMTGVYTGRSPKDKF 66
Query: 56 IVRDSHTENDVFW------ENNKYISPADFDTLKADMLDYIKDKDLFLQDLVACPHTKNA 109
IV++ ++ +++W +NK ++ + LKA + +K L++ DL +
Sbjct: 67 IVKNEASK-EIWWTSDEFKNDNKPVTEEAWAQLKALAGKELSNKPLYVVDLFCGANENTR 125
Query: 110 ISVCVVTQYAWHSLFIRNLLKHKEDLGAVPNMMSLQVVVLPDFSADPNR-HGCCSETIIA 168
+ + V + AW + F+ N+ + V+ + + G SET +
Sbjct: 126 LKIRFVMEVAWQAHFVTNMFIRPTEEELKGFEPDFVVLNASKAKVENFKELGLNSETAVV 185
Query: 169 VDLTAGLILIGGTSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSG 228
+L + +I T Y GE+KK +F+ +N P +GI MHCS N D E ++ A+FFGLSG
Sbjct: 186 FNLAEKMQIILNTWYGGEMKKGMFSMMNFYLPLQGIAAMHCSANTDLEGKNTAIFFGLSG 245
Query: 229 TGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVL 288
TGKTTLS R LIGDDEHGW +GVFNFEGGCYAK INLSKE EP+I+ A + +L
Sbjct: 246 TGKTTLSTDPKRLLIGDDEHGWDDDGVFNFEGGCYAKVINLSKENEPDIWGA-IKRNALL 304
Query: 289 ENVVVDECGIPNFKDSSVTENTRAAYPLNFIHN-HAPQSIGKHPKHVIMLAADAFGVLPP 347
ENV VD G +F D SVTENTR +YP+ I N P S K VI L+ADAFGVLPP
Sbjct: 305 ENVTVDANGKVDFADKSVTENTRVSYPIFHIKNIVKPVSKAPAAKRVIFLSADAFGVLPP 364
Query: 348 VAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIV 407
V+ L+ E+ YYFLSG+TAK+AGTE+G+ +P TFS+CFGA F+ P +Y +L +
Sbjct: 365 VSILSKEQTKYYFLSGFTAKLAGTERGITEPTPTFSSCFGAAFLTLPPTKYAEVLVKRME 424
Query: 408 KYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPLEV 467
+LVNTGW G G R+ + TR ++ AI D SI + F F+VP E+
Sbjct: 425 ASGAKAYLVNTGW----NGTGKRISIKDTRGIIDAILDGSIDTANTATIPYFNFTVPTEL 480
Query: 468 KGVDRKLLNPRDSWNDVEAYDQKMRELLLMFENNAEK 504
KGVD K+L+PR+++ D ++ K ++L F+ N +K
Sbjct: 481 KGVDTKILDPRNTYADASEWEVKAKDLAERFQKNFKK 517
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP;
1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1
PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X*
1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Length = 540
Score = 505 bits (1301), Expect = e-143
Identities = 212/519 (40%), Positives = 298/519 (57%), Gaps = 24/519 (4%)
Query: 2 EKFDLEGSSRVYRNLSTSRLYEESIR-----REKTILTCDGALRALTGQHTGRSAFDKFI 56
E + + + N S LY+E + E+ +LT GA+ TG TGRS DK+I
Sbjct: 13 EAYGISDVHDIVYNPSYDLLYQEELDPSLTGYERGVLTNLGAVAVDTGIFTGRSPKDKYI 72
Query: 57 VRDSHTENDVFW-------ENNKYISPADFDTLKADMLDYIKDKDLFLQDLVACPHTKNA 109
VRD T + +W +NK +SP + LK + + K LF+ D +
Sbjct: 73 VRDDTTRDTFWWADKGKGKNDNKPLSPETWQHLKGLVTRQLSGKRLFVVDAFCGANPDTR 132
Query: 110 ISVCVVTQYAWHSLFIRNLL---KHKEDLGAVPNMMSLQVVVLPDFSADPNRHGCCSETI 166
+SV +T+ AW + F++N+ +E G P+ + + + G SE
Sbjct: 133 LSVRFITEVAWQAHFVKNMFIRPSDEELAGFKPDFIVM--NGAKCTNPQWKEQGLNSENF 190
Query: 167 IAVDLTAGLILIGGTSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGL 226
+A +LT + LIGGT Y GE+KK +F+ +N++ P +GI MHCS N+ ++ DVA+FFGL
Sbjct: 191 VAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEKG-DVAVFFGL 249
Query: 227 SGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGT 286
SGTGKTTLS R LIGDDEHGW +GVFNFEGGCYAK+I LSKE EPEI++A
Sbjct: 250 SGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPEIYNAIR-RDA 308
Query: 287 VLENVVVDECGIPNFKDSSVTENTRAAYPLNFI-HNHAPQSIGKHPKHVIMLAADAFGVL 345
+LENV V E G +F D S TENTR +YP+ I + P S H VI L ADAFGVL
Sbjct: 309 LLENVTVREDGTIDFDDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVL 368
Query: 346 PPVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDY 405
PPV+ L ++ Y+FLSG+TAK+AGTE+G+ +P TFSACFGA F+ P QY +L
Sbjct: 369 PPVSRLTADQTQYHFLSGFTAKLAGTERGITEPTPTFSACFGAAFLSLHPTQYAEVLVKR 428
Query: 406 IVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPL 465
+ +LVNTGW G G R+ + TRA++ AI + S+ + F ++P
Sbjct: 429 MQAAGAQAYLVNTGW----NGTGKRISIKDTRAIIDAILNGSLDNAETFTLPMFNLAIPT 484
Query: 466 EVKGVDRKLLNPRDSWNDVEAYDQKMRELLLMFENNAEK 504
E+ GVD K+L+PR+++ E + +K L +F +N +K
Sbjct: 485 ELPGVDTKILDPRNTYASPEQWQEKAETLAKLFIDNFDK 523
>2zci_A Phosphoenolpyruvate carboxykinase [GTP], phosphoenolpyruvate;
GTP-dependent, signaling protein, lyase; 2.30A
{Corynebacterium glutamicum}
Length = 610
Score = 247 bits (631), Expect = 5e-66
Identities = 73/484 (15%), Positives = 132/484 (27%), Gaps = 79/484 (16%)
Query: 70 NNKYISPADFD-TLKADMLDYIKDKDLFLQDLVACPHT-KNAISVCVVTQYAWHSLFIRN 127
N + P + +K + +++ P + + +T + + +R
Sbjct: 100 TNNWAPPQAMKDEMSKHYAGSMKGRTMYVVPFCMGPISDPDPKLGVQLTDSEYVVMSMRI 159
Query: 128 LL----KHKEDLGA----VPNMMSLQVVVLPDFSADPNRHGCCSETIIAVDLTAGLILIG 179
+ + + +GA V + S V + + C I I
Sbjct: 160 MTRMGIEALDKIGANGSFVRCLHS--VGAPLEPGQEDVAWPCNDTKYITQFPETKEIWSY 217
Query: 180 GTSYAGEI----KKSVFTYLNHIFPERGIMPMHCSINM---DKEKEDVALFFGLSGTGKT 232
G+ Y G K + + E G M H I + K S GKT
Sbjct: 218 GSGYGGNAILAKKCYALRIASVMAREEGWMAEHMLILKLINPEGKAYHIAAAFPSACGKT 277
Query: 233 TLSASV------DRFLIGDDEH----GWSKEGVFNFEGGCYAKSINLSKETEPEIFSASC 282
L+ ++GDD N E G + + + + P
Sbjct: 278 NLAMITPTIPGWTAQVVGDDIAWLKLREDGLYAVNPENGFFGVAPGTNYASNPIAMKTME 337
Query: 283 RFGTVLENVVVDECGIPNFKDSSVT-----------------------ENTRAAYPLNFI 319
T+ NV + + G ++ N+R ++
Sbjct: 338 PGNTLFTNVALTDDGDIWWEGMDGDAPAHLIDWMGNDWTPESDENAAHPNSRYCVAIDQS 397
Query: 320 HNHAPQ--SIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYY----FLSGYTAKVAGTEK 373
AP+ I+ +P V + SG TA A +
Sbjct: 398 PAAAPEFNDWEGVKIDAILFGGRRADTVPLVTQTYDWEHGTMVGALLASGQTAASAEAKV 457
Query: 374 GVLKPEATFSACFGAPFMPRDPVQYGNILKDYIVKY---CVDCWLVNTGWTAGS------ 424
G PF+ + +Y D K +LVN
Sbjct: 458 GT----LRHDPMAMLPFIGYNAGEYLQNWIDMGNKGGDKMPSIFLVNWFRRGEDGRFLWP 513
Query: 425 -YGEGYRMPLSVTRAL---LKAIFDNSIKSVPYRVDEN-FGFSVPLEVKGVDRKLLNPRD 479
+G+ R+ V + + A + + D + G P+E V L P +
Sbjct: 514 GFGDNSRVLKWVIDRIEGHVGAD-ETVVGHTAKAEDLDLDGLDTPIE--DVKEALTAPAE 570
Query: 480 SWND 483
W +
Sbjct: 571 QWAN 574
>3dtb_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP];
gluconeogenesis, lyase, cytoplasm, decarboxylase,
GTP-binding, nucleotide-binding; HET: GDP 1PE EPE; 1.30A
{Rattus norvegicus} PDB: 2qey_A* 2qf1_A* 2qew_A* 2rk7_A
2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A*
3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* 1nhx_A*
2gmv_A*
Length = 624
Score = 200 bits (510), Expect = 6e-52
Identities = 74/531 (13%), Positives = 141/531 (26%), Gaps = 86/531 (16%)
Query: 48 GRSAFDKFIVRDSH-----TENDVFWENNKYISPADFD-TLKADMLDYIKDKDLFLQDLV 101
R I+ + +++S DF+ A +K + +++
Sbjct: 88 ARIESKTVIITQEQRDTVPIPKSGQSQLGRWMSEEDFEKAFNARFPGCMKGRTMYVIPFS 147
Query: 102 ACP-HTKNAISVCVVTQYAWHSLFIRNLL----KHKEDLGAVPNMMSLQVVVLP--DFSA 154
P + A +T + +R + E LG + L V P
Sbjct: 148 MGPLGSPLAKIGIELTDSPYVVASMRIMTRMGTSVLEALGDGEFIKCLHSVGCPLPLKKP 207
Query: 155 DPNRHGCCSE-TIIAVDLTAGLILIGGTSYAGEIKKS----VFTYLNHIFPERGIMPMHC 209
N C E T+IA I+ G+ Y G + + E G + H
Sbjct: 208 LVNNWACNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRIASRLAKEEGWLAEHM 267
Query: 210 SI----NMDKEKEDVALFF--------------GLSGTGKTTLSASVDRFLIGDDEHGWS 251
I N + +K+ +A F L G + + + +
Sbjct: 268 LILGITNPEGKKKYLAAAFPSACGKTNLAMMNPTLPGWKVECVGDDIAWMKFDAQGNLRA 327
Query: 252 KEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGI------------- 298
N E G + + S +T P + + T+ NV G
Sbjct: 328 ----INPENGFFGVAPGTSVKTNPNAI-KTIQKNTIFTNVAETSDGGVYWEGIDEPLAPG 382
Query: 299 ------------PNFKDSSVTENTRAAYPLNFIHNHAPQ---SIGKHPKHVIMLAADAFG 343
P ++ N+R P + P G + +I G
Sbjct: 383 VTITSWKNKEWRPQDEEPCAHPNSRFCTPASQCPIIDPAWESPEGVPIEGIIFGGRRPAG 442
Query: 344 VLPPVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILK 403
V P V + + + ++ + K PF + +Y
Sbjct: 443 V-PLVYEALSWQHGVFVGAAMRSEATAAAEHKGK-VIMHDPFAMRPFFGYNFGKYLAHWL 500
Query: 404 D---YIVKYCVDCWLVN---TGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDE 457
+ VN G+ V + I + +
Sbjct: 501 SMAHRPAAKLPKIFHVNWFRKDKNGKFLWPGFGENSRVLEWMFGRI-EGEDSA----KLT 555
Query: 458 NFGFS---VPLEVKGVDRKLLNPRDSWNDVEAYDQKMRELLLMFENNAEKK 505
G+ L +KG+ + E +++++ E+ E+
Sbjct: 556 PIGYVPKEDALNLKGLGDVNVEEL-FGISKEFWEKEVEEIDKYLEDQVNAD 605
>3moe_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP; gluconeogenesis,
lyase; HET: GTP SPV 1PE; 1.25A {Rattus norvegicus} PDB:
3mof_A* 3moh_A* 3dtb_A* 2qey_A* 2qf1_A* 2qew_A* 2rk7_A
2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A*
3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* ...
Length = 624
Score = 198 bits (505), Expect = 2e-51
Identities = 80/529 (15%), Positives = 146/529 (27%), Gaps = 82/529 (15%)
Query: 48 GRSAFDKFIVRDSH-----TENDVFWENNKYISPADF-DTLKADMLDYIKDKDLFLQDLV 101
R I+ + +++S DF A +K + +++
Sbjct: 88 ARIESKTVIITQEQRDTVPIPKSGQSQLGRWMSEEDFEKAFNARFPGCMKGRTMYVIPFS 147
Query: 102 ACP-HTKNAISVCVVTQYAWHSLFIRNLL----KHKEDLGA---VPNMMSLQVVVLPDFS 153
P + A +T + +R + E LG + + S+ LP
Sbjct: 148 MGPLGSPLAKIGIELTDSPYVVASMRIMTRMGTSVLEALGDGEFIKCLHSVGCP-LPLKK 206
Query: 154 ADPNRHGCCSE-TIIAVDLTAGLILIGGTSYAGEIKKSV----FTYLNHIFPERGIMPMH 208
N C E T+IA I+ G+ Y G + + E G + H
Sbjct: 207 PLVNNWACNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRIASRLAKEEGWLAEH 266
Query: 209 CSINMDKE---KEDVALFFGLSGTGKTTLSASVDRF------LIGDDEH--GWSKEGV-- 255
I K+ S GKT L+ +GDD + +G
Sbjct: 267 MLILGITNPEGKKKYLAAAFPSACGKTNLAMMNPTLPGWKVECVGDDIAWMKFDAQGNLR 326
Query: 256 -FNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGIPNFKDSSVT------- 307
N E G + + S +T P + + T+ NV G ++
Sbjct: 327 AINPENGFFGVAPGTSVKTNPNAI-KTIQKNTIFTNVAETSDGGVYWEGIDEPLAPGVTI 385
Query: 308 ------------------ENTRAAYPLNFIHNHAPQ---SIGKHPKHVIMLAADAFGVLP 346
N+R P + P G + +I GV
Sbjct: 386 TSWKNKEWRPQDEEPCAHPNSRFCTPASQCPIIDPAWESPEGVPIEGIIFGGRRPAGVPL 445
Query: 347 PVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNI---LK 403
L+ + V+ + + AG E PF + +Y +
Sbjct: 446 VYEALSWQHGVFVGAAMRSEATAGAEHKGK--VIMHDPFAMRPFFGYNFGKYLAHWLSMA 503
Query: 404 DYIVKYCVDCWLVN---TGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFG 460
+ VN G+ V + I + + G
Sbjct: 504 HRPAAKLPKIFHVNWFRKDKNGKFLWPGFGENSRVLEWMFGRI-EGEDSAKLT----PIG 558
Query: 461 FSVPLEVKGVDRKLLNPRDSWN----DVEAYDQKMRELLLMFENNAEKK 505
+ VP + ++ K L + E +++++ E+ E+
Sbjct: 559 Y-VP-KEDALNLKGLGDVNVEELFGISKEFWEKEVEEIDKYLEDQVNAD 605
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 39.9 bits (93), Expect = 0.002
Identities = 32/223 (14%), Positives = 54/223 (24%), Gaps = 100/223 (44%)
Query: 6 LEGSSRVY-------RNL----STSRLY--EESIRREKTILTCDGALRALTGQHTGRSAF 52
L +V +NL LY ++R+ K A +G R F
Sbjct: 360 LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK----------APSGLDQSRIPF 409
Query: 53 DKFIVRDS----------HTENDVFWENNKYISPADFDTLKADMLDY---IKDKDLFLQD 99
+ ++ S H+ + PA D + D++ KD+
Sbjct: 410 SERKLKFSNRFLPVASPFHSH---------LLVPA-SDLINKDLVKNNVSFNAKDI---- 455
Query: 100 LVACP--HTKNAISVCVVTQYAWHSLFIRNLLKHKEDLGAVP---NMMSLQVV------V 148
P T + +L + + + V
Sbjct: 456 --QIPVYDTFDG----------------SDLRVLSGSI--SERIVDCIIRLPVKWETTTQ 495
Query: 149 LP-----DFSADP------------NRHGCCSETIIAVDLTAG 174
DF P N+ G I+A L
Sbjct: 496 FKATHILDF--GPGGASGLGVLTHRNKDGTGVRVIVAGTLDIN 536
Score = 32.6 bits (74), Expect = 0.22
Identities = 56/377 (14%), Positives = 89/377 (23%), Gaps = 185/377 (49%)
Query: 218 EDVALFFGL---------SGTGKTTLSASVD----RFLIGDDEH--------------GW 250
E V F G G L+ + +L G+D H
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 251 SKEGVFNFEGGCYAKSINLSKETEPEIFSASCR--------F---GTVLENVVVDECGIP 299
+KE + N+ K++ +F A F G D+
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN------TDDY--- 169
Query: 300 NFKDSSVTENTRAAY-PL--NFIHNHAPQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKA 356
F++ T Y L + I + + L A
Sbjct: 170 -FEELRDLYQT---YHVLVGDLI-----KFSAETLSE---LIRT------------TLDA 205
Query: 357 VYYFLSGYTAKVAGTEKG--VLK----PEATFSACFGAPFMPRD-----PV--------Q 397
+T +G +L+ P T P +D P+ Q
Sbjct: 206 EKV----FT-------QGLNILEWLENPSNT-------P--DKDYLLSIPISCPLIGVIQ 245
Query: 398 YGNILKDYIVKYCVDCWL--VNTG-------WTAG-SYGEGYRMPLSVTRALLKAI---- 443
+ Y V L G G S G L VT AI
Sbjct: 246 --------LAHYVVTAKLLGFTPGELRSYLKGATGHSQG------L-VTAV---AIAETD 287
Query: 444 -----FDNSIKSVP------YR------------------VDENFGFSVP-LEVKGVDRK 473
F + K++ R ++ N G P L + + ++
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347
Query: 474 LL-------N---PRDS 480
+ N P
Sbjct: 348 QVQDYVNKTNSHLPAGK 364
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 36.8 bits (85), Expect = 0.012
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 262 CYAKSINL-SKETEPEIFSASCRFGTVLENVVVDE 295
C + + +E ++ A C G VL + +VD
Sbjct: 27 CKVYPPKIVERFSEGDVVCALC--GLVLSDKLVDT 59
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 2jj9_A* 2jhr_A*
1jwy_A* 1jx2_A* 1fmv_A ...
Length = 770
Score = 32.4 bits (73), Expect = 0.25
Identities = 19/162 (11%), Positives = 46/162 (28%), Gaps = 8/162 (4%)
Query: 212 NMDKEKEDVA-LFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLS 270
+M ++++ + L G SG GKT + V ++L + + A I +
Sbjct: 165 SMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEA 224
Query: 271 KETEPEIFSASCRFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKH 330
+ + + + G + + + + H
Sbjct: 225 FGNAKTTRNNNSSRFGKFIEIQFNSAGFISGAS-----IQSYLLEKSRVVFQSETERNYH 279
Query: 331 PKHVIMLAADAFGVLPPVAYLNPEKAVYYFLSGYTAKVAGTE 372
+ ++ A A +L ++ Y + G
Sbjct: 280 IFYQLLAGATAE--EKKALHLAGPESFNYLNQSGCVDIKGVS 319
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide,
hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP:
a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Length = 324
Score = 32.2 bits (72), Expect = 0.29
Identities = 21/148 (14%), Positives = 33/148 (22%), Gaps = 12/148 (8%)
Query: 210 SINMDKEKEDVALFFGLSGTGKTTL------SASVDRFLIGDDEHGWSKEGVFNFEGGCY 263
+ KE + L FG G GKTTL V+ + +
Sbjct: 30 AAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLE 89
Query: 264 AKSINLSKETEPEIFSASCRFGTVLENVVVDECGIPNFKDSSVTENTR------AAYPLN 317
I E A +E+ V+D ++ A
Sbjct: 90 EGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPG 149
Query: 318 FIHNHAPQSIGKHPKHVIMLAADAFGVL 345
I G + +
Sbjct: 150 LITAPLLSRFGIVEHLEYYTPEELAQGV 177
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG
ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1
c.37.1.20
Length = 323
Score = 31.1 bits (69), Expect = 0.61
Identities = 17/116 (14%), Positives = 32/116 (27%), Gaps = 4/116 (3%)
Query: 221 ALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSA 280
+ G+ G GKTT + L+G E + + G + + +
Sbjct: 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGID----VVRNQIKHFAQKK 100
Query: 281 SCRFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIM 336
+ V++DE T Y + A K + +
Sbjct: 101 LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQS 156
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 30.8 bits (69), Expect = 0.66
Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 14/134 (10%)
Query: 191 VFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHG- 249
F ++ +P R + + +N+ + G SG GK+T + R D G
Sbjct: 389 EFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY--DPLDGM 446
Query: 250 --WSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGIPNFKDSSVT 307
+ + + I + EP +F+ T+ EN+ G + +
Sbjct: 447 VSIDGQDIRTINVRYLREIIGVV-SQEPVLFA-----TTIAENIR---YGREDVTMDEIE 497
Query: 308 ENTRAAYPLNFIHN 321
+ + A +FI
Sbjct: 498 KAVKEANAYDFIMK 511
Score = 28.5 bits (63), Expect = 4.3
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 186 EIKKSVFTYLNHIFPERGIMPMHCSINMD-KEKEDVALFFGLSGTGKTTLSASVDRFL 242
+ VF Y P R +P+ ++++ K+ + +AL G SG GK+T+ ++RF
Sbjct: 1032 QFSGVVFNY-----PTRPSIPVLQGLSLEVKKGQTLALV-GSSGCGKSTVVQLLERFY 1083
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG
ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1
c.37.1.20
Length = 516
Score = 30.6 bits (68), Expect = 0.86
Identities = 35/318 (11%), Positives = 72/318 (22%), Gaps = 51/318 (16%)
Query: 186 EIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGD 245
+ +L + + H + A+ +G G GKTT + V
Sbjct: 46 GSVMKLKNWLANWENSKKNSFKHAGKDGSGVF-RAAMLYGPPGIGKTTAAHLV------- 97
Query: 246 DEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGIPNFKDSS 305
A+ + +LE D
Sbjct: 98 ------------------AQELG----------------YDILEQNASDVRSKTLLNAGV 123
Query: 306 VTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYYFLSGYT 365
+ F HN Q++ +IM D + +
Sbjct: 124 KNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLI 183
Query: 366 AKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSY 425
++P C F D + L ++ +
Sbjct: 184 LICNERNLPKMRP--FDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTT 241
Query: 426 GEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPLEVKG---VDRKLLNPRDSWN 482
R ++ LL I + ++E + K+L+ + +
Sbjct: 242 RGDIRQVIN----LLSTISTTTKTINHENINEISKAWEKNIALKPFDIAHKMLDGQIYSD 297
Query: 483 DVEAYDQKMRELLLMFEN 500
++ L F++
Sbjct: 298 IGSRNFTLNDKIALYFDD 315
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A
Length = 260
Score = 30.1 bits (67), Expect = 1.3
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 6/62 (9%)
Query: 222 LFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSAS 281
+ GL G GK+T S ++ + L + V +S + KE E S
Sbjct: 8 ILTGLPGVGKSTFSKNLAKIL------SKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKS 61
Query: 282 CR 283
Sbjct: 62 TY 63
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor
homology domain, kinesin, motor domain,
microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Length = 298
Score = 29.9 bits (67), Expect = 1.3
Identities = 25/155 (16%), Positives = 52/155 (33%), Gaps = 36/155 (23%)
Query: 5 DLEGSSRVYRNLSTSRLYEESIRREKTILTCDGALRALTGQHTGRSAFDKFIVRDSHTEN 64
+ +G+ R Y + E+++ +G + +H F++ I +E+
Sbjct: 21 EQKGTMRCYAYVM-----EQNLPENLLFDYENGVITQGLSEHV--YKFNRVIPHLKVSED 73
Query: 65 DVFWENNKYISPADFDTLKADMLDYIKDKDLFLQDLVACPHTKNAISVCVVTQYAWHSLF 124
F + +Y D+ L ++ ++ SL
Sbjct: 74 KFFTQ------------------EYSVYHDMCLNQKKNF-------NLISLSTTPHGSLR 108
Query: 125 --IRNLLKHKEDLGAVPNMMSLQVVVLPD--FSAD 155
+ L K+ + +++LQ V L D FS D
Sbjct: 109 ESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQD 143
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG
ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1
c.37.1.20
Length = 354
Score = 30.1 bits (66), Expect = 1.4
Identities = 13/116 (11%), Positives = 34/116 (29%), Gaps = 15/116 (12%)
Query: 222 LFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSAS 281
L +G +GTGK T ++ + G Y I++ +
Sbjct: 40 LLYGPNGTGKKTRCMALLESIFGPGV---------------YRLKIDVRQFVTASNRKLE 84
Query: 282 CRFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIML 337
+ ++ + + N + E + + + + H +++
Sbjct: 85 LNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVII 140
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 29.6 bits (66), Expect = 1.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 222 LFFGLSGTGKTTLSASVDRFLIGDDEH 248
LF G +G GKT L+ ++ L +E
Sbjct: 592 LFLGPTGVGKTELAKTLAATLFDTEEA 618
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1;
transferase, ATP sulfurylase, APS kinase, PAPS; HET:
ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5
c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Length = 630
Score = 29.5 bits (66), Expect = 1.8
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 11/52 (21%)
Query: 220 VALFFGLSGTGKTTLSASVDR----------FLIGDD-EHGWSKEGVFNFEG 260
GLSG GKTT+S +++ L GD+ G +K F+ E
Sbjct: 54 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPED 105
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1
(PAPS synthetase...; NMP-kinase fold, protein in complex
with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens}
PDB: 2pey_A* 2ax4_A*
Length = 179
Score = 29.3 bits (64), Expect = 1.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 220 VALFFGLSGTGKTTLSASVDRFL 242
GLSG GKTT+S +++ +L
Sbjct: 7 TVWLTGLSGAGKTTVSMALEEYL 29
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.10A {Aeropyrum pernix K1}
Length = 186
Score = 29.6 bits (65), Expect = 1.9
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 220 VALFFGLSGTGKTTLSASVDRFL 242
V GL G+GKTT++ + L
Sbjct: 15 VVWLTGLPGSGKTTIATRLADLL 37
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable
holliday junction DNA helicase; HET: ADP; 2.69A
{Campylobacter jejuni subsp}
Length = 338
Score = 29.5 bits (65), Expect = 2.0
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 210 SINMDKEKEDVALFFGLSGTGKTTL 234
+ E D LF G +G GKTTL
Sbjct: 47 AAKKRNECLDHILFSGPAGLGKTTL 71
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding; HET:
DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 29.4 bits (65), Expect = 2.1
Identities = 14/94 (14%), Positives = 29/94 (30%), Gaps = 7/94 (7%)
Query: 212 NMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSK 271
N + E+ F G G GKT L+ + + + F+ +
Sbjct: 32 NFNPEEGKGLTFVGSPGVGKTHLAVA-----TLKAIYEKKGIRGYFFDTKDLIFRLKHLM 86
Query: 272 ETEPEIFSASCRFGTVLENVVVDECGIPNFKDSS 305
+ + + + +V+D+ G D
Sbjct: 87 DEGKDTKFLKTVLNSPV--LVLDDLGSERLSDWQ 118
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG
ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1
c.37.1.20
Length = 340
Score = 29.2 bits (64), Expect = 2.2
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 222 LFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCY 263
LF+G GTGKT+ ++ R + G + E + + G
Sbjct: 50 LFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGID 91
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 29.2 bits (65), Expect = 2.2
Identities = 5/25 (20%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 210 SINMDKEKEDVALFFGLSGTGKTTL 234
+++ + ++ L G +G GK+
Sbjct: 17 NVDFEMGRDYCVLL-GPTGAGKSVF 40
>2hyd_A ABC transporter homolog; transport protein; HET: ADP; 3.00A
{Staphylococcus aureus} SCOP: c.37.1.12 f.37.1.1 PDB:
2onj_A*
Length = 578
Score = 28.9 bits (64), Expect = 2.7
Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHG---WSKEGVFNFEGGCYAKSI 267
IN+ EK + F G+SG GK+TL + RF D G + +F G I
Sbjct: 360 INLSIEKGETVAFVGMSGGGKSTLINLIPRFY--DVTSGQILIDGHNIKDFLTGSLRNQI 417
Query: 268 NLSKETEPEIFSASCRFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIHNH 322
L + + +FS TV EN+++ G P D V E + A +FI N
Sbjct: 418 GLV-QQDNILFS-----DTVKENILL---GRPTATDEEVVEAAKMANAHDFIMNL 463
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate
metabolism, nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A
{Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A*
1m7h_A* 3cr7_A*
Length = 211
Score = 28.9 bits (64), Expect = 3.1
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 220 VALFFGLSGTGKTTLSASVDRFL 242
GLS +GK+TL+ ++ L
Sbjct: 27 TIWLTGLSASGKSTLAVELEHQL 49
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 28.8 bits (63), Expect = 3.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 222 LFFGLSGTGKTTLSASVDRFLIGDDEHGWSKE 253
LF G GTGKT + ++ R L G++ E
Sbjct: 42 LFSGPPGTGKTATAIALARDLFGENWRDNFIE 73
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 28.7 bits (64), Expect = 3.4
Identities = 21/118 (17%), Positives = 42/118 (35%), Gaps = 24/118 (20%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLS 270
IN+ ++ +V G SG+GK+TL+ + RF I + G G + +
Sbjct: 28 INLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-------NGQVLI-DGHDLALADPN 79
Query: 271 K--------ETEPEIFSASCRFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIH 320
+ + + ++++N+ P V + A +FI
Sbjct: 80 WLRRQVGVVLQDNVLLN-----RSIIDNIS---LANPGMSVEKVIYAAKLAGAHDFIS 129
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 28.3 bits (63), Expect = 3.9
Identities = 26/136 (19%), Positives = 52/136 (38%), Gaps = 14/136 (10%)
Query: 186 EIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGD 245
E F+Y P++ SIN G +G+GK+T++ + RF +
Sbjct: 19 EFSDVNFSY-----PKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE 73
Query: 246 DEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGIPNFKDSS 305
+ + V + I + + + +F+ T+ N++ G + D
Sbjct: 74 GDIKIGGKNVNKYNRNSIRSIIGIVPQ-DTILFN-----ETIKYNILY---GKLDATDEE 124
Query: 306 VTENTRAAYPLNFIHN 321
V + T++A +FI
Sbjct: 125 VIKATKSAQLYDFIEA 140
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 28.0 bits (61), Expect = 5.0
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 213 MDKEKEDVALFF--GLSGTGKTTLSASVDRFL 242
M D ++ G+SG+GK+ +++ V L
Sbjct: 1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAHQL 32
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 28.0 bits (61), Expect = 5.5
Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 203 GIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNF 258
G++P + + +K + G + GK++ + R + S +F
Sbjct: 13 GLVPRGSAKSFSSQKAYKIVLAGDAAVGKSSF---LMRLCKNEFRENISATLGVDF 65
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleotide
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 27.7 bits (60), Expect = 5.6
Identities = 11/116 (9%), Positives = 29/116 (25%), Gaps = 13/116 (11%)
Query: 222 LFFGLSGTGKTTLSASVDRFL------IGDDEHGWSKEGVFNFEGGCYAKSINLSKETEP 275
+ G S GK+ + + L G D + G + P
Sbjct: 7 ILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGP 66
Query: 276 EIFSASCRFGTVLE-------NVVVDECGIPNFKDSSVTENTRAAYPLNFIHNHAP 324
E + + + +++D+ + + + ++
Sbjct: 67 EFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCD 122
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism,
ATP-binding, nucleotide biosynthesis,
nucleotide-binding, transferase; HET: ADP; 1.9A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Length = 201
Score = 27.9 bits (61), Expect = 6.1
Identities = 15/123 (12%), Positives = 31/123 (25%), Gaps = 14/123 (11%)
Query: 222 LFFGLSGTGKTT----LSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEI 277
L G G GK T L+ + I E G + ++ ++
Sbjct: 24 LLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDL 83
Query: 278 FSASCRFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIML 337
+V D P+ + + + + + + G V+
Sbjct: 84 T----------NELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEF 133
Query: 338 AAD 340
Sbjct: 134 RVS 136
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate
kinase); nucleoside monophosphate kinase, NMP kinase;
HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP:
c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Length = 194
Score = 27.9 bits (61), Expect = 6.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 213 MDKEKEDVALFFGLSGTGKTTLSA 236
M+K K +V G G+GK T A
Sbjct: 1 MEKSKPNVVFVLGGPGSGKGTQCA 24
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 27.5 bits (61), Expect = 6.4
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 185 GEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFL 242
G +K F ++ +P + + + V G +G+GK+T++A +
Sbjct: 15 GLVK---FQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69
>2wjy_A Regulator of nonsense transcripts 1; alternative splicing, nonsense
mediated decay, zinc-finger, ATP-binding, polymorphism,
metal-binding, UPF2; 2.50A {Homo sapiens} PDB: 2wjv_A
2iyk_A
Length = 800
Score = 27.8 bits (61), Expect = 6.5
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 219 DVALFFGLSGTGKTTLSASVDRFLIGDDEH 248
++L G GTGKT SA++ L
Sbjct: 372 PLSLIQGPPGTGKTVTSATIVYHLARQGNG 401
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 27.5 bits (60), Expect = 6.7
Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 7/94 (7%)
Query: 212 NMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSK 271
++ +G G GK+ L A++ L E + +F +S
Sbjct: 146 QYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL---SEKKGVSTTLLHFPSFAIDVKNAISN 202
Query: 272 ETEPEIFSASCRFGTVLENVVVDECGIPNFKDSS 305
+ E A +++D+ G
Sbjct: 203 GSVKEEIDAVKNV----PVLILDDIGAEQATSWV 232
>2awn_A Maltose/maltodextrin import ATP-binding protein MALK; ATP-binding
cassette, transport protein; HET: ADP; 2.30A
{Escherichia coli K12} SCOP: b.40.6.3 c.37.1.12 PDB:
1q1e_A 1q12_A* 2awo_A* 3fh6_A 2r6g_A* 1q1b_A
Length = 381
Score = 27.5 bits (61), Expect = 6.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTL 234
IN+D + + +F G SG GK+TL
Sbjct: 22 INLDIHEGEFVVFVGPSGCGKSTL 45
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 27.7 bits (61), Expect = 6.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 222 LFFGLSGTGKTTLSASVDRFL 242
LF G +GKTTL+A++
Sbjct: 173 LFKGPIDSGKTTLAAALLELC 193
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and
neural wiskott-aldrich syndrome...; verprolin,
polyproline, protein- protein complex; NMR {Homo
sapiens}
Length = 169
Score = 27.5 bits (61), Expect = 7.6
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 222 LFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGV 255
F G T+S++V + D WSK+
Sbjct: 48 SLFSFLGKKCVTMSSAVVQLYAADRNCMWSKKCS 81
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP; HET: ADP; 1.70A {Leishmania major
strain friedlin} SCOP: c.37.1.1
Length = 184
Score = 27.2 bits (59), Expect = 7.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 212 NMDKEKEDVALFFGLSGTGKTTLS 235
+M++ K L G GTGKT+++
Sbjct: 4 SMEQPKGINILITGTPGTGKTSMA 27
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 1.70A {Thermus thermophilus HB8} PDB: 2d2f_A*
Length = 250
Score = 27.6 bits (61), Expect = 7.7
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHG 249
+N+ K +V G +G GK+TL + E G
Sbjct: 22 VNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERG 60
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6- bisphosphatase; transferase
(phospho), hydrolase (phospho), glycolysis, bifunctional
enzyme; HET: ATG; 2.00A {Rattus norvegicus} SCOP:
c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A*
1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Length = 469
Score = 27.3 bits (60), Expect = 7.9
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 220 VALFFGLSGTGKTTLSASVDRFL 242
+ + GL GKT +S + R+L
Sbjct: 41 LIVMVGLPARGKTYISKKLTRYL 63
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 27.3 bits (59), Expect = 8.2
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 220 VALFFGLSGTGKTTLSASVDRFL 242
+ + G+ G GK+T+ A V L
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEIL 25
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase,
winged-helix domain, ATP hydrolysis, walker A, walker B,
sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga
maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A*
1in8_A* 1in7_A* 1j7k_A*
Length = 334
Score = 27.4 bits (60), Expect = 8.3
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 210 SINMDKEKEDVALFFGLSGTGKTTL 234
+ M E D L G G GKTTL
Sbjct: 43 AAKMRGEVLDHVLLAGPPGLGKTTL 67
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 27.0 bits (59), Expect = 9.1
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 180 GTSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVD 239
GT I+++V ++ I + + I EK V +F G +G+GKTT A +
Sbjct: 92 GTDKGKIIEEAVKEAVSEILETSRRIDLIEEIR-KAEKPYVIMFVGFNGSGKTTTIAKLA 150
Query: 240 RFLIGDDEHGWS 251
+L
Sbjct: 151 NWLKNHGFSVVI 162
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.320 0.137 0.416
Gapped
Lambda K H
0.267 0.0457 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 4,475,914
Number of extensions: 209081
Number of successful extensions: 925
Number of sequences better than 10.0: 1
Number of HSP's gapped: 881
Number of HSP's successfully gapped: 60
Length of query: 509
Length of database: 5,693,230
Length adjustment: 97
Effective length of query: 412
Effective length of database: 3,341,562
Effective search space: 1376723544
Effective search space used: 1376723544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.2 bits)