RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780826|ref|YP_003065239.1| phosphoenolpyruvate carboxykinase [Candidatus Liberibacter asiaticus str. psy62] (509 letters) >1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus HB8} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A* Length = 529 Score = 603 bits (1557), Expect = e-173 Identities = 250/510 (49%), Positives = 335/510 (65%), Gaps = 7/510 (1%) Query: 1 MEKFDLEGSSRVYRNLSTSRLYEESIRREKTILTCDGALRALTGQHTGRSAFDKFIVRDS 60 +E + RV+ N + L E ++ R + +L G L T +TGRS DKF+VR+ Sbjct: 4 LEALGIHPKKRVFWNTVSPVLVEHTLLRGEGLLAHHGPLVVDTTPYTGRSPKDKFVVREP 63 Query: 61 HTENDVFW-ENNKYISPADFDTLKADMLDYIKDKDLFLQDLVACPHTKNAISVCVVTQYA 119 E +++W E N+ +P F+ L ++ Y+ ++DL++QDL A + ++V VVT+ Sbjct: 64 EVEGEIWWGEVNQPFAPEAFEALYQRVVQYLSERDLYVQDLYAGADRRYRLAVRVVTESP 123 Query: 120 WHSLFIRNLLKHKEDLGAVPNMMS----LQVVVLPDFSADPNRHGCCSETIIAVDLTAGL 175 WH+LF RN+ G + + VV P F A P R G SE + + L Sbjct: 124 WHALFARNMFILPRRFGNDDEVEAFVPGFTVVHAPYFQAVPERDGTRSEVFVGISFQRRL 183 Query: 176 ILIGGTSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLS 235 +LI GT YAGEIKKS+FT +N++ P+RG+ PMH S N+ KE DVA+FFGLSGTGKTTLS Sbjct: 184 VLIVGTKYAGEIKKSIFTVMNYLMPKRGVFPMHASANVGKE-GDVAVFFGLSGTGKTTLS 242 Query: 236 ASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDE 295 +R LIGDDEHGWS++GVFNFEGGCYAK I LS E EP I+ AS +F +LENVVV+ Sbjct: 243 TDPERPLIGDDEHGWSEDGVFNFEGGCYAKVIRLSPEHEPLIYKASNQFEAILENVVVNP 302 Query: 296 CG-IPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAADAFGVLPPVAYLNPE 354 + D S TENTR++YP+ + N + HP+ + L+ADA+GVLPP+A L+PE Sbjct: 303 ESRRVQWDDDSKTENTRSSYPIAHLENVVESGVAGHPRAIFFLSADAYGVLPPIARLSPE 362 Query: 355 KAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVDCW 414 +A+YYFLSGYTA+VAGTE+GV +P ATFSACFGAPF+P P Y +L + I K+ + Sbjct: 363 EAMYYFLSGYTARVAGTERGVTEPRATFSACFGAPFLPMHPGVYARMLGEKIRKHAPRVY 422 Query: 415 LVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPLEVKGVDRKL 474 LVNTGWT G YG GYR PL VTRALLKA ++++VPYR D FGF VPLE GV ++L Sbjct: 423 LVNTGWTGGPYGVGYRFPLPVTRALLKAALSGALENVPYRRDPVFGFEVPLEAPGVPQEL 482 Query: 475 LNPRDSWNDVEAYDQKMRELLLMFENNAEK 504 LNPR++W D EAYDQ+ R+L +F+ N +K Sbjct: 483 LNPRETWADKEAYDQQARKLARLFQENFQK 512 >1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1 Length = 524 Score = 578 bits (1491), Expect = e-165 Identities = 194/503 (38%), Positives = 283/503 (56%), Gaps = 9/503 (1%) Query: 10 SRVYRNLSTSRLYEESIR-REKTILTCDGALRALTGQHTGRSAFDKFIVRDSHTENDVFW 68 ++RNL + L + +++ + + LT GAL ++ TGRS DK IV +V W Sbjct: 2 PTIHRNLLSPELVQWALKIEKDSRLTARGALAVMSYAKTGRSPLDKRIVDTDDVRENVDW 61 Query: 69 -ENNKYISPADFDTLKADMLDYIKDKD-LFLQDLVACPHTKNAISVCVVTQYAWHSLFIR 126 + N +S F ++ +++ ++ LF+ D A + + V V T +H+LF+R Sbjct: 62 GKVNMKLSEESFARVRKIAKEFLDTREHLFVVDCFAGHDERYRLKVRVFTTRPYHALFMR 121 Query: 127 NLLKHKEDLGAVPNMMSLQVVV-LPDFSADPNRHGCCSETIIAVDLTAGLILIGGTSYAG 185 ++L V+ + ADP+ G S T +A++ +I GT YAG Sbjct: 122 DMLIVPTPEELATFGEPDYVIYNAGECKADPSIPGLTSTTCVALNFKTREQVILGTEYAG 181 Query: 186 EIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGD 245 E+KK + T + + P+ + MH S N+ K+ DV +FFGLSGTGKTTLSA R LIGD Sbjct: 182 EMKKGILTVMFELMPQMNHLCMHASANVGKQ-GDVTVFFGLSGTGKTTLSADPHRNLIGD 240 Query: 246 DEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDE-CGIPNFKDS 304 DEH W+ GVFN EGGCYAK+I L+ +TE +I+ A RFG V EN V+D+ G +F D Sbjct: 241 DEHVWTDRGVFNIEGGCYAKAIGLNPKTEKDIYDA-VRFGAVAENCVLDKRTGEIDFYDE 299 Query: 305 SVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYYFLSGY 364 S+ +NTR AYPL+ I ++I HPK+VI L DAFGV+PPVA L +A+++F+ GY Sbjct: 300 SICKNTRVAYPLSHIEGALSKAIAGHPKNVIFLTNDAFGVMPPVARLTSAQAMFWFVMGY 359 Query: 365 TAKVAGTEKGVLK-PEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAG 423 TA V G E G + FS+CFG PF+ R YG L + + K+ WL+NTG+ G Sbjct: 360 TANVPGVEAGGTRTARPIFSSCFGGPFLVRHATFYGEQLAEKMQKHNSRVWLLNTGYAGG 419 Query: 424 SYGEGY-RMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPLEVKGVDRKLLNPRDSWN 482 G RMPL VTRA++ AI D ++ Y +G +P V V LLNPR +W Sbjct: 420 RADRGAKRMPLRVTRAIIDAIHDGTLDRTEYEEYPGWGLHIPKYVAKVPEHLLNPRKAWK 479 Query: 483 DVEAYDQKMRELLLMFENNAEKK 505 DV +++ +EL+ MF+ + + Sbjct: 480 DVRQFNETSKELVAMFQESFSAR 502 >1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A Length = 532 Score = 508 bits (1310), Expect = e-144 Identities = 206/517 (39%), Positives = 297/517 (57%), Gaps = 19/517 (3%) Query: 1 MEKFDLEGSSRVYRNLSTSRLYEESIRR-----EKTILTCDGALRALTGQHTGRSAFDKF 55 + K+ + G++ + N S L+ + EK +T GA+ +TG +TGRS DKF Sbjct: 7 LAKYGITGATNIVHNPSHEELFAAETQASLEGFEKGTVTEMGAVNVMTGVYTGRSPKDKF 66 Query: 56 IVRDSHTENDVFW------ENNKYISPADFDTLKADMLDYIKDKDLFLQDLVACPHTKNA 109 IV++ ++ +++W +NK ++ + LKA + +K L++ DL + Sbjct: 67 IVKNEASK-EIWWTSDEFKNDNKPVTEEAWAQLKALAGKELSNKPLYVVDLFCGANENTR 125 Query: 110 ISVCVVTQYAWHSLFIRNLLKHKEDLGAVPNMMSLQVVVLPDFSADPNR-HGCCSETIIA 168 + + V + AW + F+ N+ + V+ + + G SET + Sbjct: 126 LKIRFVMEVAWQAHFVTNMFIRPTEEELKGFEPDFVVLNASKAKVENFKELGLNSETAVV 185 Query: 169 VDLTAGLILIGGTSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSG 228 +L + +I T Y GE+KK +F+ +N P +GI MHCS N D E ++ A+FFGLSG Sbjct: 186 FNLAEKMQIILNTWYGGEMKKGMFSMMNFYLPLQGIAAMHCSANTDLEGKNTAIFFGLSG 245 Query: 229 TGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVL 288 TGKTTLS R LIGDDEHGW +GVFNFEGGCYAK INLSKE EP+I+ A + +L Sbjct: 246 TGKTTLSTDPKRLLIGDDEHGWDDDGVFNFEGGCYAKVINLSKENEPDIWGA-IKRNALL 304 Query: 289 ENVVVDECGIPNFKDSSVTENTRAAYPLNFIHN-HAPQSIGKHPKHVIMLAADAFGVLPP 347 ENV VD G +F D SVTENTR +YP+ I N P S K VI L+ADAFGVLPP Sbjct: 305 ENVTVDANGKVDFADKSVTENTRVSYPIFHIKNIVKPVSKAPAAKRVIFLSADAFGVLPP 364 Query: 348 VAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIV 407 V+ L+ E+ YYFLSG+TAK+AGTE+G+ +P TFS+CFGA F+ P +Y +L + Sbjct: 365 VSILSKEQTKYYFLSGFTAKLAGTERGITEPTPTFSSCFGAAFLTLPPTKYAEVLVKRME 424 Query: 408 KYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPLEV 467 +LVNTGW G G R+ + TR ++ AI D SI + F F+VP E+ Sbjct: 425 ASGAKAYLVNTGW----NGTGKRISIKDTRGIIDAILDGSIDTANTATIPYFNFTVPTEL 480 Query: 468 KGVDRKLLNPRDSWNDVEAYDQKMRELLLMFENNAEK 504 KGVD K+L+PR+++ D ++ K ++L F+ N +K Sbjct: 481 KGVDTKILDPRNTYADASEWEVKAKDLAERFQKNFKK 517 >2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A* Length = 540 Score = 505 bits (1301), Expect = e-143 Identities = 212/519 (40%), Positives = 298/519 (57%), Gaps = 24/519 (4%) Query: 2 EKFDLEGSSRVYRNLSTSRLYEESIR-----REKTILTCDGALRALTGQHTGRSAFDKFI 56 E + + + N S LY+E + E+ +LT GA+ TG TGRS DK+I Sbjct: 13 EAYGISDVHDIVYNPSYDLLYQEELDPSLTGYERGVLTNLGAVAVDTGIFTGRSPKDKYI 72 Query: 57 VRDSHTENDVFW-------ENNKYISPADFDTLKADMLDYIKDKDLFLQDLVACPHTKNA 109 VRD T + +W +NK +SP + LK + + K LF+ D + Sbjct: 73 VRDDTTRDTFWWADKGKGKNDNKPLSPETWQHLKGLVTRQLSGKRLFVVDAFCGANPDTR 132 Query: 110 ISVCVVTQYAWHSLFIRNLL---KHKEDLGAVPNMMSLQVVVLPDFSADPNRHGCCSETI 166 +SV +T+ AW + F++N+ +E G P+ + + + G SE Sbjct: 133 LSVRFITEVAWQAHFVKNMFIRPSDEELAGFKPDFIVM--NGAKCTNPQWKEQGLNSENF 190 Query: 167 IAVDLTAGLILIGGTSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGL 226 +A +LT + LIGGT Y GE+KK +F+ +N++ P +GI MHCS N+ ++ DVA+FFGL Sbjct: 191 VAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEKG-DVAVFFGL 249 Query: 227 SGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGT 286 SGTGKTTLS R LIGDDEHGW +GVFNFEGGCYAK+I LSKE EPEI++A Sbjct: 250 SGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPEIYNAIR-RDA 308 Query: 287 VLENVVVDECGIPNFKDSSVTENTRAAYPLNFI-HNHAPQSIGKHPKHVIMLAADAFGVL 345 +LENV V E G +F D S TENTR +YP+ I + P S H VI L ADAFGVL Sbjct: 309 LLENVTVREDGTIDFDDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVL 368 Query: 346 PPVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDY 405 PPV+ L ++ Y+FLSG+TAK+AGTE+G+ +P TFSACFGA F+ P QY +L Sbjct: 369 PPVSRLTADQTQYHFLSGFTAKLAGTERGITEPTPTFSACFGAAFLSLHPTQYAEVLVKR 428 Query: 406 IVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPL 465 + +LVNTGW G G R+ + TRA++ AI + S+ + F ++P Sbjct: 429 MQAAGAQAYLVNTGW----NGTGKRISIKDTRAIIDAILNGSLDNAETFTLPMFNLAIPT 484 Query: 466 EVKGVDRKLLNPRDSWNDVEAYDQKMRELLLMFENNAEK 504 E+ GVD K+L+PR+++ E + +K L +F +N +K Sbjct: 485 ELPGVDTKILDPRNTYASPEQWQEKAETLAKLFIDNFDK 523 >2zci_A Phosphoenolpyruvate carboxykinase [GTP], phosphoenolpyruvate; GTP-dependent, signaling protein, lyase; 2.30A {Corynebacterium glutamicum} Length = 610 Score = 247 bits (631), Expect = 5e-66 Identities = 73/484 (15%), Positives = 132/484 (27%), Gaps = 79/484 (16%) Query: 70 NNKYISPADFD-TLKADMLDYIKDKDLFLQDLVACPHT-KNAISVCVVTQYAWHSLFIRN 127 N + P + +K + +++ P + + +T + + +R Sbjct: 100 TNNWAPPQAMKDEMSKHYAGSMKGRTMYVVPFCMGPISDPDPKLGVQLTDSEYVVMSMRI 159 Query: 128 LL----KHKEDLGA----VPNMMSLQVVVLPDFSADPNRHGCCSETIIAVDLTAGLILIG 179 + + + +GA V + S V + + C I I Sbjct: 160 MTRMGIEALDKIGANGSFVRCLHS--VGAPLEPGQEDVAWPCNDTKYITQFPETKEIWSY 217 Query: 180 GTSYAGEI----KKSVFTYLNHIFPERGIMPMHCSINM---DKEKEDVALFFGLSGTGKT 232 G+ Y G K + + E G M H I + K S GKT Sbjct: 218 GSGYGGNAILAKKCYALRIASVMAREEGWMAEHMLILKLINPEGKAYHIAAAFPSACGKT 277 Query: 233 TLSASV------DRFLIGDDEH----GWSKEGVFNFEGGCYAKSINLSKETEPEIFSASC 282 L+ ++GDD N E G + + + + P Sbjct: 278 NLAMITPTIPGWTAQVVGDDIAWLKLREDGLYAVNPENGFFGVAPGTNYASNPIAMKTME 337 Query: 283 RFGTVLENVVVDECGIPNFKDSSVT-----------------------ENTRAAYPLNFI 319 T+ NV + + G ++ N+R ++ Sbjct: 338 PGNTLFTNVALTDDGDIWWEGMDGDAPAHLIDWMGNDWTPESDENAAHPNSRYCVAIDQS 397 Query: 320 HNHAPQ--SIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYY----FLSGYTAKVAGTEK 373 AP+ I+ +P V + SG TA A + Sbjct: 398 PAAAPEFNDWEGVKIDAILFGGRRADTVPLVTQTYDWEHGTMVGALLASGQTAASAEAKV 457 Query: 374 GVLKPEATFSACFGAPFMPRDPVQYGNILKDYIVKY---CVDCWLVNTGWTAGS------ 424 G PF+ + +Y D K +LVN Sbjct: 458 GT----LRHDPMAMLPFIGYNAGEYLQNWIDMGNKGGDKMPSIFLVNWFRRGEDGRFLWP 513 Query: 425 -YGEGYRMPLSVTRAL---LKAIFDNSIKSVPYRVDEN-FGFSVPLEVKGVDRKLLNPRD 479 +G+ R+ V + + A + + D + G P+E V L P + Sbjct: 514 GFGDNSRVLKWVIDRIEGHVGAD-ETVVGHTAKAEDLDLDGLDTPIE--DVKEALTAPAE 570 Query: 480 SWND 483 W + Sbjct: 571 QWAN 574 >3dtb_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP]; gluconeogenesis, lyase, cytoplasm, decarboxylase, GTP-binding, nucleotide-binding; HET: GDP 1PE EPE; 1.30A {Rattus norvegicus} PDB: 2qey_A* 2qf1_A* 2qew_A* 2rk7_A 2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A* 3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* 1nhx_A* 2gmv_A* Length = 624 Score = 200 bits (510), Expect = 6e-52 Identities = 74/531 (13%), Positives = 141/531 (26%), Gaps = 86/531 (16%) Query: 48 GRSAFDKFIVRDSH-----TENDVFWENNKYISPADFD-TLKADMLDYIKDKDLFLQDLV 101 R I+ + +++S DF+ A +K + +++ Sbjct: 88 ARIESKTVIITQEQRDTVPIPKSGQSQLGRWMSEEDFEKAFNARFPGCMKGRTMYVIPFS 147 Query: 102 ACP-HTKNAISVCVVTQYAWHSLFIRNLL----KHKEDLGAVPNMMSLQVVVLP--DFSA 154 P + A +T + +R + E LG + L V P Sbjct: 148 MGPLGSPLAKIGIELTDSPYVVASMRIMTRMGTSVLEALGDGEFIKCLHSVGCPLPLKKP 207 Query: 155 DPNRHGCCSE-TIIAVDLTAGLILIGGTSYAGEIKKS----VFTYLNHIFPERGIMPMHC 209 N C E T+IA I+ G+ Y G + + E G + H Sbjct: 208 LVNNWACNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRIASRLAKEEGWLAEHM 267 Query: 210 SI----NMDKEKEDVALFF--------------GLSGTGKTTLSASVDRFLIGDDEHGWS 251 I N + +K+ +A F L G + + + + Sbjct: 268 LILGITNPEGKKKYLAAAFPSACGKTNLAMMNPTLPGWKVECVGDDIAWMKFDAQGNLRA 327 Query: 252 KEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGI------------- 298 N E G + + S +T P + + T+ NV G Sbjct: 328 ----INPENGFFGVAPGTSVKTNPNAI-KTIQKNTIFTNVAETSDGGVYWEGIDEPLAPG 382 Query: 299 ------------PNFKDSSVTENTRAAYPLNFIHNHAPQ---SIGKHPKHVIMLAADAFG 343 P ++ N+R P + P G + +I G Sbjct: 383 VTITSWKNKEWRPQDEEPCAHPNSRFCTPASQCPIIDPAWESPEGVPIEGIIFGGRRPAG 442 Query: 344 VLPPVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILK 403 V P V + + + ++ + K PF + +Y Sbjct: 443 V-PLVYEALSWQHGVFVGAAMRSEATAAAEHKGK-VIMHDPFAMRPFFGYNFGKYLAHWL 500 Query: 404 D---YIVKYCVDCWLVN---TGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDE 457 + VN G+ V + I + + Sbjct: 501 SMAHRPAAKLPKIFHVNWFRKDKNGKFLWPGFGENSRVLEWMFGRI-EGEDSA----KLT 555 Query: 458 NFGFS---VPLEVKGVDRKLLNPRDSWNDVEAYDQKMRELLLMFENNAEKK 505 G+ L +KG+ + E +++++ E+ E+ Sbjct: 556 PIGYVPKEDALNLKGLGDVNVEEL-FGISKEFWEKEVEEIDKYLEDQVNAD 605 >3moe_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP; gluconeogenesis, lyase; HET: GTP SPV 1PE; 1.25A {Rattus norvegicus} PDB: 3mof_A* 3moh_A* 3dtb_A* 2qey_A* 2qf1_A* 2qew_A* 2rk7_A 2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A* 3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* ... Length = 624 Score = 198 bits (505), Expect = 2e-51 Identities = 80/529 (15%), Positives = 146/529 (27%), Gaps = 82/529 (15%) Query: 48 GRSAFDKFIVRDSH-----TENDVFWENNKYISPADF-DTLKADMLDYIKDKDLFLQDLV 101 R I+ + +++S DF A +K + +++ Sbjct: 88 ARIESKTVIITQEQRDTVPIPKSGQSQLGRWMSEEDFEKAFNARFPGCMKGRTMYVIPFS 147 Query: 102 ACP-HTKNAISVCVVTQYAWHSLFIRNLL----KHKEDLGA---VPNMMSLQVVVLPDFS 153 P + A +T + +R + E LG + + S+ LP Sbjct: 148 MGPLGSPLAKIGIELTDSPYVVASMRIMTRMGTSVLEALGDGEFIKCLHSVGCP-LPLKK 206 Query: 154 ADPNRHGCCSE-TIIAVDLTAGLILIGGTSYAGEIKKSV----FTYLNHIFPERGIMPMH 208 N C E T+IA I+ G+ Y G + + E G + H Sbjct: 207 PLVNNWACNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRIASRLAKEEGWLAEH 266 Query: 209 CSINMDKE---KEDVALFFGLSGTGKTTLSASVDRF------LIGDDEH--GWSKEGV-- 255 I K+ S GKT L+ +GDD + +G Sbjct: 267 MLILGITNPEGKKKYLAAAFPSACGKTNLAMMNPTLPGWKVECVGDDIAWMKFDAQGNLR 326 Query: 256 -FNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGIPNFKDSSVT------- 307 N E G + + S +T P + + T+ NV G ++ Sbjct: 327 AINPENGFFGVAPGTSVKTNPNAI-KTIQKNTIFTNVAETSDGGVYWEGIDEPLAPGVTI 385 Query: 308 ------------------ENTRAAYPLNFIHNHAPQ---SIGKHPKHVIMLAADAFGVLP 346 N+R P + P G + +I GV Sbjct: 386 TSWKNKEWRPQDEEPCAHPNSRFCTPASQCPIIDPAWESPEGVPIEGIIFGGRRPAGVPL 445 Query: 347 PVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNI---LK 403 L+ + V+ + + AG E PF + +Y + Sbjct: 446 VYEALSWQHGVFVGAAMRSEATAGAEHKGK--VIMHDPFAMRPFFGYNFGKYLAHWLSMA 503 Query: 404 DYIVKYCVDCWLVN---TGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFG 460 + VN G+ V + I + + G Sbjct: 504 HRPAAKLPKIFHVNWFRKDKNGKFLWPGFGENSRVLEWMFGRI-EGEDSAKLT----PIG 558 Query: 461 FSVPLEVKGVDRKLLNPRDSWN----DVEAYDQKMRELLLMFENNAEKK 505 + VP + ++ K L + E +++++ E+ E+ Sbjct: 559 Y-VP-KEDALNLKGLGDVNVEELFGISKEFWEKEVEEIDKYLEDQVNAD 605 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 39.9 bits (93), Expect = 0.002 Identities = 32/223 (14%), Positives = 54/223 (24%), Gaps = 100/223 (44%) Query: 6 LEGSSRVY-------RNL----STSRLY--EESIRREKTILTCDGALRALTGQHTGRSAF 52 L +V +NL LY ++R+ K A +G R F Sbjct: 360 LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK----------APSGLDQSRIPF 409 Query: 53 DKFIVRDS----------HTENDVFWENNKYISPADFDTLKADMLDY---IKDKDLFLQD 99 + ++ S H+ + PA D + D++ KD+ Sbjct: 410 SERKLKFSNRFLPVASPFHSH---------LLVPA-SDLINKDLVKNNVSFNAKDI---- 455 Query: 100 LVACP--HTKNAISVCVVTQYAWHSLFIRNLLKHKEDLGAVP---NMMSLQVV------V 148 P T + +L + + + V Sbjct: 456 --QIPVYDTFDG----------------SDLRVLSGSI--SERIVDCIIRLPVKWETTTQ 495 Query: 149 LP-----DFSADP------------NRHGCCSETIIAVDLTAG 174 DF P N+ G I+A L Sbjct: 496 FKATHILDF--GPGGASGLGVLTHRNKDGTGVRVIVAGTLDIN 536 Score = 32.6 bits (74), Expect = 0.22 Identities = 56/377 (14%), Positives = 89/377 (23%), Gaps = 185/377 (49%) Query: 218 EDVALFFGL---------SGTGKTTLSASVD----RFLIGDDEH--------------GW 250 E V F G G L+ + +L G+D H Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118 Query: 251 SKEGVFNFEGGCYAKSINLSKETEPEIFSASCR--------F---GTVLENVVVDECGIP 299 +KE + N+ K++ +F A F G D+ Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN------TDDY--- 169 Query: 300 NFKDSSVTENTRAAY-PL--NFIHNHAPQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKA 356 F++ T Y L + I + + L A Sbjct: 170 -FEELRDLYQT---YHVLVGDLI-----KFSAETLSE---LIRT------------TLDA 205 Query: 357 VYYFLSGYTAKVAGTEKG--VLK----PEATFSACFGAPFMPRD-----PV--------Q 397 +T +G +L+ P T P +D P+ Q Sbjct: 206 EKV----FT-------QGLNILEWLENPSNT-------P--DKDYLLSIPISCPLIGVIQ 245 Query: 398 YGNILKDYIVKYCVDCWL--VNTG-------WTAG-SYGEGYRMPLSVTRALLKAI---- 443 + Y V L G G S G L VT AI Sbjct: 246 --------LAHYVVTAKLLGFTPGELRSYLKGATGHSQG------L-VTAV---AIAETD 287 Query: 444 -----FDNSIKSVP------YR------------------VDENFGFSVP-LEVKGVDRK 473 F + K++ R ++ N G P L + + ++ Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347 Query: 474 LL-------N---PRDS 480 + N P Sbjct: 348 QVQDYVNKTNSHLPAGK 364 >3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197 Score = 36.8 bits (85), Expect = 0.012 Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 3/35 (8%) Query: 262 CYAKSINL-SKETEPEIFSASCRFGTVLENVVVDE 295 C + + +E ++ A C G VL + +VD Sbjct: 27 CKVYPPKIVERFSEGDVVCALC--GLVLSDKLVDT 59 >1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 2jj9_A* 2jhr_A* 1jwy_A* 1jx2_A* 1fmv_A ... Length = 770 Score = 32.4 bits (73), Expect = 0.25 Identities = 19/162 (11%), Positives = 46/162 (28%), Gaps = 8/162 (4%) Query: 212 NMDKEKEDVA-LFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLS 270 +M ++++ + L G SG GKT + V ++L + + A I + Sbjct: 165 SMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEA 224 Query: 271 KETEPEIFSASCRFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKH 330 + + + + G + + + + H Sbjct: 225 FGNAKTTRNNNSSRFGKFIEIQFNSAGFISGAS-----IQSYLLEKSRVVFQSETERNYH 279 Query: 331 PKHVIMLAADAFGVLPPVAYLNPEKAVYYFLSGYTAKVAGTE 372 + ++ A A +L ++ Y + G Sbjct: 280 IFYQLLAGATAE--EKKALHLAGPESFNYLNQSGCVDIKGVS 319 >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Length = 324 Score = 32.2 bits (72), Expect = 0.29 Identities = 21/148 (14%), Positives = 33/148 (22%), Gaps = 12/148 (8%) Query: 210 SINMDKEKEDVALFFGLSGTGKTTL------SASVDRFLIGDDEHGWSKEGVFNFEGGCY 263 + KE + L FG G GKTTL V+ + + Sbjct: 30 AAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLE 89 Query: 264 AKSINLSKETEPEIFSASCRFGTVLENVVVDECGIPNFKDSSVTENTR------AAYPLN 317 I E A +E+ V+D ++ A Sbjct: 90 EGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPG 149 Query: 318 FIHNHAPQSIGKHPKHVIMLAADAFGVL 345 I G + + Sbjct: 150 LITAPLLSRFGIVEHLEYYTPEELAQGV 177 >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 323 Score = 31.1 bits (69), Expect = 0.61 Identities = 17/116 (14%), Positives = 32/116 (27%), Gaps = 4/116 (3%) Query: 221 ALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSA 280 + G+ G GKTT + L+G E + + G + + + Sbjct: 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGID----VVRNQIKHFAQKK 100 Query: 281 SCRFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIM 336 + V++DE T Y + A K + + Sbjct: 101 LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQS 156 >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 Score = 30.8 bits (69), Expect = 0.66 Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 14/134 (10%) Query: 191 VFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHG- 249 F ++ +P R + + +N+ + G SG GK+T + R D G Sbjct: 389 EFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY--DPLDGM 446 Query: 250 --WSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGIPNFKDSSVT 307 + + + I + EP +F+ T+ EN+ G + + Sbjct: 447 VSIDGQDIRTINVRYLREIIGVV-SQEPVLFA-----TTIAENIR---YGREDVTMDEIE 497 Query: 308 ENTRAAYPLNFIHN 321 + + A +FI Sbjct: 498 KAVKEANAYDFIMK 511 Score = 28.5 bits (63), Expect = 4.3 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 7/58 (12%) Query: 186 EIKKSVFTYLNHIFPERGIMPMHCSINMD-KEKEDVALFFGLSGTGKTTLSASVDRFL 242 + VF Y P R +P+ ++++ K+ + +AL G SG GK+T+ ++RF Sbjct: 1032 QFSGVVFNY-----PTRPSIPVLQGLSLEVKKGQTLALV-GSSGCGKSTVVQLLERFY 1083 >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516 Score = 30.6 bits (68), Expect = 0.86 Identities = 35/318 (11%), Positives = 72/318 (22%), Gaps = 51/318 (16%) Query: 186 EIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGD 245 + +L + + H + A+ +G G GKTT + V Sbjct: 46 GSVMKLKNWLANWENSKKNSFKHAGKDGSGVF-RAAMLYGPPGIGKTTAAHLV------- 97 Query: 246 DEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGIPNFKDSS 305 A+ + +LE D Sbjct: 98 ------------------AQELG----------------YDILEQNASDVRSKTLLNAGV 123 Query: 306 VTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYYFLSGYT 365 + F HN Q++ +IM D + + Sbjct: 124 KNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLI 183 Query: 366 AKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSY 425 ++P C F D + L ++ + Sbjct: 184 LICNERNLPKMRP--FDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTT 241 Query: 426 GEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPLEVKG---VDRKLLNPRDSWN 482 R ++ LL I + ++E + K+L+ + + Sbjct: 242 RGDIRQVIN----LLSTISTTTKTINHENINEISKAWEKNIALKPFDIAHKMLDGQIYSD 297 Query: 483 DVEAYDQKMRELLLMFEN 500 ++ L F++ Sbjct: 298 IGSRNFTLNDKIALYFDD 315 >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A Length = 260 Score = 30.1 bits (67), Expect = 1.3 Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 6/62 (9%) Query: 222 LFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSAS 281 + GL G GK+T S ++ + L + V +S + KE E S Sbjct: 8 ILTGLPGVGKSTFSKNLAKIL------SKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKS 61 Query: 282 CR 283 Sbjct: 62 TY 63 >2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae} Length = 298 Score = 29.9 bits (67), Expect = 1.3 Identities = 25/155 (16%), Positives = 52/155 (33%), Gaps = 36/155 (23%) Query: 5 DLEGSSRVYRNLSTSRLYEESIRREKTILTCDGALRALTGQHTGRSAFDKFIVRDSHTEN 64 + +G+ R Y + E+++ +G + +H F++ I +E+ Sbjct: 21 EQKGTMRCYAYVM-----EQNLPENLLFDYENGVITQGLSEHV--YKFNRVIPHLKVSED 73 Query: 65 DVFWENNKYISPADFDTLKADMLDYIKDKDLFLQDLVACPHTKNAISVCVVTQYAWHSLF 124 F + +Y D+ L ++ ++ SL Sbjct: 74 KFFTQ------------------EYSVYHDMCLNQKKNF-------NLISLSTTPHGSLR 108 Query: 125 --IRNLLKHKEDLGAVPNMMSLQVVVLPD--FSAD 155 + L K+ + +++LQ V L D FS D Sbjct: 109 ESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQD 143 >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 354 Score = 30.1 bits (66), Expect = 1.4 Identities = 13/116 (11%), Positives = 34/116 (29%), Gaps = 15/116 (12%) Query: 222 LFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSAS 281 L +G +GTGK T ++ + G Y I++ + Sbjct: 40 LLYGPNGTGKKTRCMALLESIFGPGV---------------YRLKIDVRQFVTASNRKLE 84 Query: 282 CRFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIML 337 + ++ + + N + E + + + + H +++ Sbjct: 85 LNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVII 140 >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Length = 854 Score = 29.6 bits (66), Expect = 1.8 Identities = 10/27 (37%), Positives = 15/27 (55%) Query: 222 LFFGLSGTGKTTLSASVDRFLIGDDEH 248 LF G +G GKT L+ ++ L +E Sbjct: 592 LFLGPTGVGKTELAKTLAATLFDTEEA 618 >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* Length = 630 Score = 29.5 bits (66), Expect = 1.8 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 11/52 (21%) Query: 220 VALFFGLSGTGKTTLSASVDR----------FLIGDD-EHGWSKEGVFNFEG 260 GLSG GKTT+S +++ L GD+ G +K F+ E Sbjct: 54 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPED 105 >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* Length = 179 Score = 29.3 bits (64), Expect = 1.8 Identities = 10/23 (43%), Positives = 15/23 (65%) Query: 220 VALFFGLSGTGKTTLSASVDRFL 242 GLSG GKTT+S +++ +L Sbjct: 7 TVWLTGLSGAGKTTVSMALEEYL 29 >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Aeropyrum pernix K1} Length = 186 Score = 29.6 bits (65), Expect = 1.9 Identities = 9/23 (39%), Positives = 13/23 (56%) Query: 220 VALFFGLSGTGKTTLSASVDRFL 242 V GL G+GKTT++ + L Sbjct: 15 VVWLTGLPGSGKTTIATRLADLL 37 >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Length = 338 Score = 29.5 bits (65), Expect = 2.0 Identities = 11/25 (44%), Positives = 13/25 (52%) Query: 210 SINMDKEKEDVALFFGLSGTGKTTL 234 + E D LF G +G GKTTL Sbjct: 47 AAKKRNECLDHILFSGPAGLGKTTL 71 >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Length = 180 Score = 29.4 bits (65), Expect = 2.1 Identities = 14/94 (14%), Positives = 29/94 (30%), Gaps = 7/94 (7%) Query: 212 NMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSK 271 N + E+ F G G GKT L+ + + + F+ + Sbjct: 32 NFNPEEGKGLTFVGSPGVGKTHLAVA-----TLKAIYEKKGIRGYFFDTKDLIFRLKHLM 86 Query: 272 ETEPEIFSASCRFGTVLENVVVDECGIPNFKDSS 305 + + + + +V+D+ G D Sbjct: 87 DEGKDTKFLKTVLNSPV--LVLDDLGSERLSDWQ 118 >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 340 Score = 29.2 bits (64), Expect = 2.2 Identities = 12/42 (28%), Positives = 20/42 (47%) Query: 222 LFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCY 263 LF+G GTGKT+ ++ R + G + E + + G Sbjct: 50 LFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGID 91 >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 Score = 29.2 bits (65), Expect = 2.2 Identities = 5/25 (20%), Positives = 13/25 (52%), Gaps = 1/25 (4%) Query: 210 SINMDKEKEDVALFFGLSGTGKTTL 234 +++ + ++ L G +G GK+ Sbjct: 17 NVDFEMGRDYCVLL-GPTGAGKSVF 40 >2hyd_A ABC transporter homolog; transport protein; HET: ADP; 3.00A {Staphylococcus aureus} SCOP: c.37.1.12 f.37.1.1 PDB: 2onj_A* Length = 578 Score = 28.9 bits (64), Expect = 2.7 Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 14/115 (12%) Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHG---WSKEGVFNFEGGCYAKSI 267 IN+ EK + F G+SG GK+TL + RF D G + +F G I Sbjct: 360 INLSIEKGETVAFVGMSGGGKSTLINLIPRFY--DVTSGQILIDGHNIKDFLTGSLRNQI 417 Query: 268 NLSKETEPEIFSASCRFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIHNH 322 L + + +FS TV EN+++ G P D V E + A +FI N Sbjct: 418 GLV-QQDNILFS-----DTVKENILL---GRPTATDEEVVEAAKMANAHDFIMNL 463 >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* Length = 211 Score = 28.9 bits (64), Expect = 3.1 Identities = 8/23 (34%), Positives = 13/23 (56%) Query: 220 VALFFGLSGTGKTTLSASVDRFL 242 GLS +GK+TL+ ++ L Sbjct: 27 TIWLTGLSASGKSTLAVELEHQL 49 >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Length = 319 Score = 28.8 bits (63), Expect = 3.3 Identities = 12/32 (37%), Positives = 17/32 (53%) Query: 222 LFFGLSGTGKTTLSASVDRFLIGDDEHGWSKE 253 LF G GTGKT + ++ R L G++ E Sbjct: 42 LFSGPPGTGKTATAIALARDLFGENWRDNFIE 73 >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 Score = 28.7 bits (64), Expect = 3.4 Identities = 21/118 (17%), Positives = 42/118 (35%), Gaps = 24/118 (20%) Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLS 270 IN+ ++ +V G SG+GK+TL+ + RF I + G G + + Sbjct: 28 INLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-------NGQVLI-DGHDLALADPN 79 Query: 271 K--------ETEPEIFSASCRFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIH 320 + + + ++++N+ P V + A +FI Sbjct: 80 WLRRQVGVVLQDNVLLN-----RSIIDNIS---LANPGMSVEKVIYAAKLAGAHDFIS 129 >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 Score = 28.3 bits (63), Expect = 3.9 Identities = 26/136 (19%), Positives = 52/136 (38%), Gaps = 14/136 (10%) Query: 186 EIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGD 245 E F+Y P++ SIN G +G+GK+T++ + RF + Sbjct: 19 EFSDVNFSY-----PKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE 73 Query: 246 DEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGIPNFKDSS 305 + + V + I + + + +F+ T+ N++ G + D Sbjct: 74 GDIKIGGKNVNKYNRNSIRSIIGIVPQ-DTILFN-----ETIKYNILY---GKLDATDEE 124 Query: 306 VTENTRAAYPLNFIHN 321 V + T++A +FI Sbjct: 125 VIKATKSAQLYDFIEA 140 >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Length = 175 Score = 28.0 bits (61), Expect = 5.0 Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Query: 213 MDKEKEDVALFF--GLSGTGKTTLSASVDRFL 242 M D ++ G+SG+GK+ +++ V L Sbjct: 1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAHQL 32 >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199 Score = 28.0 bits (61), Expect = 5.5 Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 3/56 (5%) Query: 203 GIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNF 258 G++P + + +K + G + GK++ + R + S +F Sbjct: 13 GLVPRGSAKSFSSQKAYKIVLAGDAAVGKSSF---LMRLCKNEFRENISATLGVDF 65 >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleotide binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Length = 178 Score = 27.7 bits (60), Expect = 5.6 Identities = 11/116 (9%), Positives = 29/116 (25%), Gaps = 13/116 (11%) Query: 222 LFFGLSGTGKTTLSASVDRFL------IGDDEHGWSKEGVFNFEGGCYAKSINLSKETEP 275 + G S GK+ + + L G D + G + P Sbjct: 7 ILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGP 66 Query: 276 EIFSASCRFGTVLE-------NVVVDECGIPNFKDSSVTENTRAAYPLNFIHNHAP 324 E + + + +++D+ + + + ++ Sbjct: 67 EFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCD 122 >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A Length = 201 Score = 27.9 bits (61), Expect = 6.1 Identities = 15/123 (12%), Positives = 31/123 (25%), Gaps = 14/123 (11%) Query: 222 LFFGLSGTGKTT----LSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEI 277 L G G GK T L+ + I E G + ++ ++ Sbjct: 24 LLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDL 83 Query: 278 FSASCRFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIML 337 +V D P+ + + + + + + G V+ Sbjct: 84 T----------NELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEF 133 Query: 338 AAD 340 Sbjct: 134 RVS 136 >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* Length = 194 Score = 27.9 bits (61), Expect = 6.4 Identities = 10/24 (41%), Positives = 13/24 (54%) Query: 213 MDKEKEDVALFFGLSGTGKTTLSA 236 M+K K +V G G+GK T A Sbjct: 1 MEKSKPNVVFVLGGPGSGKGTQCA 24 >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 Score = 27.5 bits (61), Expect = 6.4 Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 3/58 (5%) Query: 185 GEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFL 242 G +K F ++ +P + + + V G +G+GK+T++A + Sbjct: 15 GLVK---FQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69 >2wjy_A Regulator of nonsense transcripts 1; alternative splicing, nonsense mediated decay, zinc-finger, ATP-binding, polymorphism, metal-binding, UPF2; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A Length = 800 Score = 27.8 bits (61), Expect = 6.5 Identities = 10/30 (33%), Positives = 14/30 (46%) Query: 219 DVALFFGLSGTGKTTLSASVDRFLIGDDEH 248 ++L G GTGKT SA++ L Sbjct: 372 PLSLIQGPPGTGKTVTSATIVYHLARQGNG 401 >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Length = 308 Score = 27.5 bits (60), Expect = 6.7 Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 7/94 (7%) Query: 212 NMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSK 271 ++ +G G GK+ L A++ L E + +F +S Sbjct: 146 QYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL---SEKKGVSTTLLHFPSFAIDVKNAISN 202 Query: 272 ETEPEIFSASCRFGTVLENVVVDECGIPNFKDSS 305 + E A +++D+ G Sbjct: 203 GSVKEEIDAVKNV----PVLILDDIGAEQATSWV 232 >2awn_A Maltose/maltodextrin import ATP-binding protein MALK; ATP-binding cassette, transport protein; HET: ADP; 2.30A {Escherichia coli K12} SCOP: b.40.6.3 c.37.1.12 PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 2r6g_A* 1q1b_A Length = 381 Score = 27.5 bits (61), Expect = 6.7 Identities = 11/24 (45%), Positives = 16/24 (66%) Query: 211 INMDKEKEDVALFFGLSGTGKTTL 234 IN+D + + +F G SG GK+TL Sbjct: 22 INLDIHEGEFVVFVGPSGCGKSTL 45 >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A Length = 377 Score = 27.7 bits (61), Expect = 6.8 Identities = 9/21 (42%), Positives = 13/21 (61%) Query: 222 LFFGLSGTGKTTLSASVDRFL 242 LF G +GKTTL+A++ Sbjct: 173 LFKGPIDSGKTTLAAALLELC 193 >2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens} Length = 169 Score = 27.5 bits (61), Expect = 7.6 Identities = 9/34 (26%), Positives = 14/34 (41%) Query: 222 LFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGV 255 F G T+S++V + D WSK+ Sbjct: 48 SLFSFLGKKCVTMSSAVVQLYAADRNCMWSKKCS 81 >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP; HET: ADP; 1.70A {Leishmania major strain friedlin} SCOP: c.37.1.1 Length = 184 Score = 27.2 bits (59), Expect = 7.7 Identities = 9/24 (37%), Positives = 15/24 (62%) Query: 212 NMDKEKEDVALFFGLSGTGKTTLS 235 +M++ K L G GTGKT+++ Sbjct: 4 SMEQPKGINILITGTPGTGKTSMA 27 >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.70A {Thermus thermophilus HB8} PDB: 2d2f_A* Length = 250 Score = 27.6 bits (61), Expect = 7.7 Identities = 11/39 (28%), Positives = 17/39 (43%) Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHG 249 +N+ K +V G +G GK+TL + E G Sbjct: 22 VNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERG 60 >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6- bisphosphatase; transferase (phospho), hydrolase (phospho), glycolysis, bifunctional enzyme; HET: ATG; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A Length = 469 Score = 27.3 bits (60), Expect = 7.9 Identities = 8/23 (34%), Positives = 13/23 (56%) Query: 220 VALFFGLSGTGKTTLSASVDRFL 242 + + GL GKT +S + R+L Sbjct: 41 LIVMVGLPARGKTYISKKLTRYL 63 >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 Length = 194 Score = 27.3 bits (59), Expect = 8.2 Identities = 8/23 (34%), Positives = 13/23 (56%) Query: 220 VALFFGLSGTGKTTLSASVDRFL 242 + + G+ G GK+T+ A V L Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEIL 25 >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* Length = 334 Score = 27.4 bits (60), Expect = 8.3 Identities = 11/25 (44%), Positives = 12/25 (48%) Query: 210 SINMDKEKEDVALFFGLSGTGKTTL 234 + M E D L G G GKTTL Sbjct: 43 AAKMRGEVLDHVLLAGPPGLGKTTL 67 >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* Length = 328 Score = 27.0 bits (59), Expect = 9.1 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 180 GTSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVD 239 GT I+++V ++ I + + I EK V +F G +G+GKTT A + Sbjct: 92 GTDKGKIIEEAVKEAVSEILETSRRIDLIEEIR-KAEKPYVIMFVGFNGSGKTTTIAKLA 150 Query: 240 RFLIGDDEHGWS 251 +L Sbjct: 151 NWLKNHGFSVVI 162 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.320 0.137 0.416 Gapped Lambda K H 0.267 0.0457 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 4,475,914 Number of extensions: 209081 Number of successful extensions: 925 Number of sequences better than 10.0: 1 Number of HSP's gapped: 881 Number of HSP's successfully gapped: 60 Length of query: 509 Length of database: 5,693,230 Length adjustment: 97 Effective length of query: 412 Effective length of database: 3,341,562 Effective search space: 1376723544 Effective search space used: 1376723544 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (27.2 bits)