RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780826|ref|YP_003065239.1| phosphoenolpyruvate
carboxykinase [Candidatus Liberibacter asiaticus str. psy62]
(509 letters)
>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus
thermophilus [TaxId: 274]}
Length = 318
Score = 366 bits (941), Expect = e-102
Identities = 176/302 (58%), Positives = 221/302 (73%), Gaps = 2/302 (0%)
Query: 204 IMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCY 263
+ PMH S N+ KE DVA+FFGLSGTGKTTLS +R LIGDDEHGWS++GVFNFEGGCY
Sbjct: 1 VFPMHASANVGKEG-DVAVFFGLSGTGKTTLSTDPERPLIGDDEHGWSEDGVFNFEGGCY 59
Query: 264 AKSINLSKETEPEIFSASCRFGTVLENVVVDE-CGIPNFKDSSVTENTRAAYPLNFIHNH 322
AK I LS E EP I+ AS +F +LENVVV+ + D S TENTR++YP+ + N
Sbjct: 60 AKVIRLSPEHEPLIYKASNQFEAILENVVVNPESRRVQWDDDSKTENTRSSYPIAHLENV 119
Query: 323 APQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATF 382
+ HP+ + L+ADA+GVLPP+A L+PE+A+YYFLSGYTA+VAGTE+GV +P ATF
Sbjct: 120 VESGVAGHPRAIFFLSADAYGVLPPIARLSPEEAMYYFLSGYTARVAGTERGVTEPRATF 179
Query: 383 SACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKA 442
SACFGAPF+P P Y +L + I K+ +LVNTGWT G YG GYR PL VTRALLKA
Sbjct: 180 SACFGAPFLPMHPGVYARMLGEKIRKHAPRVYLVNTGWTGGPYGVGYRFPLPVTRALLKA 239
Query: 443 IFDNSIKSVPYRVDENFGFSVPLEVKGVDRKLLNPRDSWNDVEAYDQKMRELLLMFENNA 502
++++VPYR D FGF VPLE GV ++LLNPR++W D EAYDQ+ R+L +F+ N
Sbjct: 240 ALSGALENVPYRRDPVFGFEVPLEAPGVPQELLNPRETWADKEAYDQQARKLARLFQENF 299
Query: 503 EK 504
+K
Sbjct: 300 QK 301
>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase)
{Trypanosoma cruzi [TaxId: 5693]}
Length = 323
Score = 355 bits (913), Expect = 4e-99
Identities = 141/304 (46%), Positives = 188/304 (61%), Gaps = 5/304 (1%)
Query: 205 MPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYA 264
+ MH S N+ K+ DV +FFGLSGTGKTTLSA R LIGDDEH W+ GVFN EGGCYA
Sbjct: 2 LCMHASANVGKQG-DVTVFFGLSGTGKTTLSADPHRNLIGDDEHVWTDRGVFNIEGGCYA 60
Query: 265 KSINLSKETEPEIFSASCRFGTVLENVVVD-ECGIPNFKDSSVTENTRAAYPLNFIHNHA 323
K+I L+ +TE +I+ A RFG V EN V+D G +F D S+ +NTR AYPL+ I
Sbjct: 61 KAIGLNPKTEKDIYDA-VRFGAVAENCVLDKRTGEIDFYDESICKNTRVAYPLSHIEGAL 119
Query: 324 PQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYYFLSGYTAKVAGTEKGVLK-PEATF 382
++I HPK+VI L DAFGV+PPVA L +A+++F+ GYTA V G E G + F
Sbjct: 120 SKAIAGHPKNVIFLTNDAFGVMPPVARLTSAQAMFWFVMGYTANVPGVEAGGTRTARPIF 179
Query: 383 SACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEG-YRMPLSVTRALLK 441
S+CFG PF+ R YG L + + K+ WL+NTG+ G G RMPL VTRA++
Sbjct: 180 SSCFGGPFLVRHATFYGEQLAEKMQKHNSRVWLLNTGYAGGRADRGAKRMPLRVTRAIID 239
Query: 442 AIFDNSIKSVPYRVDENFGFSVPLEVKGVDRKLLNPRDSWNDVEAYDQKMRELLLMFENN 501
AI D ++ Y +G +P V V LLNPR +W DV +++ +EL+ MF+ +
Sbjct: 240 AIHDGTLDRTEYEEYPGWGLHIPKYVAKVPEHLLNPRKAWKDVRQFNETSKELVAMFQES 299
Query: 502 AEKK 505
+
Sbjct: 300 FSAR 303
>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase)
{Escherichia coli [TaxId: 562]}
Length = 313
Score = 343 bits (881), Expect = 2e-95
Identities = 150/302 (49%), Positives = 194/302 (64%), Gaps = 7/302 (2%)
Query: 204 IMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCY 263
I MHCS N+ EK DVA+FFGLSGTGKTTLS R LIGDDEHGW +GVFNFEGGCY
Sbjct: 1 IASMHCSANVG-EKGDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCY 59
Query: 264 AKSINLSKETEPEIFSASCRFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFI-HNH 322
AK+I LSKE EPEI++A R +LENV V E G +F D S TENTR +YP+ I +
Sbjct: 60 AKTIKLSKEAEPEIYNA-IRRDALLENVTVREDGTIDFDDGSKTENTRVSYPIYHIDNIV 118
Query: 323 APQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATF 382
P S H VI L ADAFGVLPPV+ L ++ Y+FLSG+TAK+AGTE+G+ +P TF
Sbjct: 119 KPVSKAGHATKVIFLTADAFGVLPPVSRLTADQTQYHFLSGFTAKLAGTERGITEPTPTF 178
Query: 383 SACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKA 442
SACFGA F+ P QY +L + +LVNTGW G G R+ + TRA++ A
Sbjct: 179 SACFGAAFLSLHPTQYAEVLVKRMQAAGAQAYLVNTGW----NGTGKRISIKDTRAIIDA 234
Query: 443 IFDNSIKSVPYRVDENFGFSVPLEVKGVDRKLLNPRDSWNDVEAYDQKMRELLLMFENNA 502
I + S+ + F ++P E+ GVD K+L+PR+++ E + +K L +F +N
Sbjct: 235 ILNGSLDNAETFTLPMFNLAIPTELPGVDTKILDPRNTYASPEQWQEKAETLAKLFIDNF 294
Query: 503 EK 504
+K
Sbjct: 295 DK 296
>d1j3ba2 c.109.1.1 (A:2-211) Phosphoenolpyruvate (PEP) carboxykinase
(ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus
[TaxId: 274]}
Length = 210
Score = 209 bits (533), Expect = 5e-55
Identities = 73/208 (35%), Positives = 113/208 (54%), Gaps = 5/208 (2%)
Query: 1 MEKFDLEGSSRVYRNLSTSRLYEESIRREKTILTCDGALRALTGQHTGRSAFDKFIVRDS 60
+E + RV+ N + L E ++ R + +L G L T +TGRS DKF+VR+
Sbjct: 3 LEALGIHPKKRVFWNTVSPVLVEHTLLRGEGLLAHHGPLVVDTTPYTGRSPKDKFVVREP 62
Query: 61 HTENDVFWEN-NKYISPADFDTLKADMLDYIKDKDLFLQDLVACPHTKNAISVCVVTQYA 119
E +++W N+ +P F+ L ++ Y+ ++DL++QDL A + ++V VVT+
Sbjct: 63 EVEGEIWWGEVNQPFAPEAFEALYQRVVQYLSERDLYVQDLYAGADRRYRLAVRVVTESP 122
Query: 120 WHSLFIRNLLKHKEDLGAVPNMMS----LQVVVLPDFSADPNRHGCCSETIIAVDLTAGL 175
WH+LF RN+ G + + VV P F A P R G SE + + L
Sbjct: 123 WHALFARNMFILPRRFGNDDEVEAFVPGFTVVHAPYFQAVPERDGTRSEVFVGISFQRRL 182
Query: 176 ILIGGTSYAGEIKKSVFTYLNHIFPERG 203
+LI GT YAGEIKKS+FT +N++ P+RG
Sbjct: 183 VLIVGTKYAGEIKKSIFTVMNYLMPKRG 210
>d2olra2 c.109.1.1 (A:6-227) Phosphoenolpyruvate (PEP) carboxykinase
(ATP-oxaloacetate carboxy-lyase) {Escherichia coli
[TaxId: 562]}
Length = 222
Score = 186 bits (473), Expect = 4e-48
Identities = 65/218 (29%), Positives = 106/218 (48%), Gaps = 17/218 (7%)
Query: 1 MEKFDLEGSSRVYRNLSTSRLYEESIR-----REKTILTCDGALRALTGQHTGRSAFDKF 55
+E + + + N S LY+E + E+ +LT GA+ TG TGRS DK+
Sbjct: 7 LEAYGISDVHDIVYNPSYDLLYQEELDPSLTGYERGVLTNLGAVAVDTGIFTGRSPKDKY 66
Query: 56 IVRDSHTENDVFW-------ENNKYISPADFDTLKADMLDYIKDKDLFLQDLVACPHTKN 108
IVRD T + +W +NK +SP + LK + + K LF+ D +
Sbjct: 67 IVRDDTTRDTFWWADKGKGKNDNKPLSPETWQHLKGLVTRQLSGKRLFVVDAFCGANPDT 126
Query: 109 AISVCVVTQYAWHSLFIRNLL---KHKEDLGAVPNMMSLQVVVLPDFSADPNRHGCCSET 165
+SV +T+ AW + F++N+ +E G P+ + + + G SE
Sbjct: 127 RLSVRFITEVAWQAHFVKNMFIRPSDEELAGFKPDFI--VMNGAKCTNPQWKEQGLNSEN 184
Query: 166 IIAVDLTAGLILIGGTSYAGEIKKSVFTYLNHIFPERG 203
+A +LT + LIGGT Y GE+KK +F+ +N++ P +G
Sbjct: 185 FVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKG 222
>d1ii2a2 c.109.1.1 (A:2-200) Phosphoenolpyruvate (PEP) carboxykinase
(ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi
[TaxId: 5693]}
Length = 199
Score = 185 bits (472), Expect = 5e-48
Identities = 52/197 (26%), Positives = 92/197 (46%), Gaps = 4/197 (2%)
Query: 10 SRVYRNLSTSRLYEESIR-REKTILTCDGALRALTGQHTGRSAFDKFIVRDSHTENDVFW 68
++RNL + L + +++ + + LT GAL ++ TGRS DK IV +V W
Sbjct: 2 PTIHRNLLSPELVQWALKIEKDSRLTARGALAVMSYAKTGRSPLDKRIVDTDDVRENVDW 61
Query: 69 E-NNKYISPADFDTLKADMLDYIKDKD-LFLQDLVACPHTKNAISVCVVTQYAWHSLFIR 126
N +S F ++ +++ ++ LF+ D A + + V V T +H+LF+R
Sbjct: 62 GKVNMKLSEESFARVRKIAKEFLDTREHLFVVDCFAGHDERYRLKVRVFTTRPYHALFMR 121
Query: 127 NLLKHKEDLGAVPNMMS-LQVVVLPDFSADPNRHGCCSETIIAVDLTAGLILIGGTSYAG 185
++L + + ADP+ G S T +A++ +I GT YAG
Sbjct: 122 DMLIVPTPEELATFGEPDYVIYNAGECKADPSIPGLTSTTCVALNFKTREQVILGTEYAG 181
Query: 186 EIKKSVFTYLNHIFPER 202
E+KK + T + + P+
Sbjct: 182 EMKKGILTVMFELMPQM 198
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 31.6 bits (71), Expect = 0.17
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFL 242
+N++ + V L G++G GKTT + R
Sbjct: 2 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQF 33
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 31.2 bits (70), Expect = 0.22
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFL 242
+N+ E V + G++GTGKTT + +
Sbjct: 4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF 35
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 30.3 bits (67), Expect = 0.38
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 220 VALFFGLSGTGKTTLSASVDRFL 242
+ + GL GKT +S + R+L
Sbjct: 4 LIVMVGLPARGKTYISKKLTRYL 26
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 29.8 bits (67), Expect = 0.53
Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 24/119 (20%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLS 270
IN+ EK + F G+SG GK+TL + RF G +G N+
Sbjct: 37 INLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT-------SGQILIDG------HNIK 83
Query: 271 KETEPEIFSASCRF--------GTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIHN 321
+ + TV EN+++ G P D V E + A +FI N
Sbjct: 84 DFLTGSLRNQIGLVQQDNILFSDTVKENILL---GRPTATDEEVVEAAKMANAHDFIMN 139
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 29.3 bits (64), Expect = 0.78
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 220 VALFFGLSGTGKTTLSASVDRFL 242
G +GK ++ ++ L
Sbjct: 8 TIFLTGYMNSGKDAIARALQVTL 30
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 29.3 bits (65), Expect = 0.78
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 214 DKEKEDVALFFGLSGTGKTTLSA 236
+ ++ GL G+GKTT +A
Sbjct: 6 VLKDRNLWFLVGLQGSGKTTTAA 28
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 29.4 bits (65), Expect = 0.79
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 220 VALFFGLSGTGKTTLSASVDRFL 242
GLS +GK+TL+ ++ L
Sbjct: 26 TIWLTGLSASGKSTLAVELEHQL 48
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 29.3 bits (64), Expect = 0.79
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 220 VALFFGLSGTGKTTLSASVDRFL 242
GLSG GKTT+S +++ +L
Sbjct: 21 TVWLTGLSGAGKTTVSMALEEYL 43
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 29.3 bits (65), Expect = 0.84
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 215 KEKEDVALFFGLSGTGKTTLSASVDRFL 242
+ K V L G++G GKTT A + R+
Sbjct: 3 EPKGRVVLVVGVNGVGKTTTIAKLGRYY 30
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 29.2 bits (65), Expect = 0.87
Identities = 5/25 (20%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 210 SINMDKEKEDVALFFGLSGTGKTTL 234
+++ + ++ L G +G GK+
Sbjct: 17 NVDFEMGRDYCVLL-GPTGAGKSVF 40
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 28.9 bits (63), Expect = 1.0
Identities = 18/122 (14%), Positives = 34/122 (27%), Gaps = 6/122 (4%)
Query: 221 ALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGV------FNFEGGCYAKSINLSKETE 274
LF+G GTGKT+ ++ + L G D + K+ ++
Sbjct: 36 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSK 95
Query: 275 PEIFSASCRFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHV 334
P + +++DE S T Y + + +
Sbjct: 96 PSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPL 155
Query: 335 IM 336
Sbjct: 156 AS 157
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 28.6 bits (63), Expect = 1.3
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 212 NMDKEKEDVALFFGLSGTGKTTLSASVDRFL 242
+ + V + G+ GTGK T + + F
Sbjct: 6 VIPDKIPYVIMLVGVQGTGKATTAGKLAYFY 36
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 28.2 bits (61), Expect = 1.5
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 186 EIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGD 245
+ +L + + H + A+ +G G GKTT + V + L D
Sbjct: 21 GSVMKLKNWLANWENSKKNSFKHAGKD-GSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD 79
Query: 246 DEH 248
Sbjct: 80 ILE 82
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 28.0 bits (61), Expect = 1.7
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 213 MDKEKEDVALFFGLSGTGKTTLSA 236
M+K K +V G G+GK T A
Sbjct: 1 MEKSKPNVVFVLGGPGSGKGTQCA 24
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 28.0 bits (61), Expect = 2.1
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 220 VALFFGLSGTGKTTLSASVDRFL 242
+ F SGTGKTTL + L
Sbjct: 4 LLAFAAWSGTGKTTLLKKLIPAL 26
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 27.7 bits (60), Expect = 2.2
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 220 VALFFGLSGTGKTTLSASVDRFL 242
+ + G+SG+GK+ +++ V L
Sbjct: 8 IYVLMGVSGSGKSAVASEVAHQL 30
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 27.7 bits (60), Expect = 2.2
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 220 VALFFGLSGTGKTTLSASVDRFL 242
+ + G S GK+ + + L
Sbjct: 5 MIILNGGSSAGKSGIVRCLQSVL 27
>d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease,
catalytic domain {Bacillus pasteurii [TaxId: 1474]}
Length = 390
Score = 27.8 bits (62), Expect = 2.3
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 129 LKHKEDLGAVPNM--MSLQVVVLPDFSA-----DPNRHGCCSETIIAVD 170
LK ED GA P SL V D N G +T+ A++
Sbjct: 88 LKIHEDWGATPASIDRSLTVADEADVQVAIHSDTLNEAGFLEDTLRAIN 136
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 27.6 bits (60), Expect = 2.5
Identities = 14/118 (11%), Positives = 25/118 (21%), Gaps = 9/118 (7%)
Query: 222 LFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSAS 281
L G G+GK+T++ ++ G +F I + S
Sbjct: 8 LLSGHPGSGKSTIAEALAN------LPGVP---KVHFHSDDLWGYIKHGRIDPWLPQSHQ 58
Query: 282 CRFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAA 339
+ V + R + F P
Sbjct: 59 QNRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIE 116
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 27.6 bits (61), Expect = 2.6
Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 185 GEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFL 242
G ++ F ++ +P R + + + +V G +G+GK+T++A +
Sbjct: 10 GLVQ---FQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY 64
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 27.6 bits (61), Expect = 2.6
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 222 LFFGLSGTGKTTLSASV---DRFLIGDD 246
L G SG GK+ + + LI DD
Sbjct: 18 LITGDSGVGKSETALELVQRGHRLIADD 45
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 27.5 bits (61), Expect = 2.7
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFL 242
IN+ G SG+GK+T+++ + RF
Sbjct: 34 INLKIPAGKTVALVGRSGSGKSTIASLITRFY 65
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 27.3 bits (59), Expect = 3.0
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 220 VALFFGLSGTGKTTLSASVDRFL 242
+ + G+ G GK+T+ A V L
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEIL 25
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 27.4 bits (61), Expect = 3.1
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTL 234
+N+ + + + G SG GKTT
Sbjct: 25 LNLTIKDGEFLVLLGPSGCGKTTT 48
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 27.2 bits (60), Expect = 3.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTL 234
IN+D + + +F G SG GK+TL
Sbjct: 19 INLDIHEGEFVVFVGPSGCGKSTL 42
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 27.2 bits (60), Expect = 3.3
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 222 LFFGLSGTGKTTLSASV---DRFLIGDD 246
L G SG GK+ + + L+ DD
Sbjct: 19 LITGDSGIGKSETALELIKRGHRLVADD 46
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 26.9 bits (59), Expect = 3.6
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTL 234
+++ E + + G +G GKT
Sbjct: 19 LSLKVESGEYFVILGPTGAGKTLF 42
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 27.0 bits (58), Expect = 3.6
Identities = 7/40 (17%), Positives = 14/40 (35%)
Query: 220 VALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFE 259
+ FG TGK+ L ++ + G + +
Sbjct: 36 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID 75
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 26.8 bits (58), Expect = 3.8
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 210 SINMDKEKEDVALFFGLSGTGKTTL 234
+ KE + L FG G GKTTL
Sbjct: 27 AAKARKEPLEHLLLFGPPGLGKTTL 51
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 26.9 bits (58), Expect = 4.0
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 214 DKEKEDVALFFGLSGTGKTTLSASVDRFLIG 244
E L G G+GKT+L +++ G
Sbjct: 28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQG 58
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 26.8 bits (59), Expect = 4.1
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFL 242
I+ + + + F G SG GK+T+ + ++RF
Sbjct: 21 ISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 26.8 bits (59), Expect = 4.1
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTL 234
++++ + + + G SG GKTT
Sbjct: 22 MSLEVKDGEFMILLGPSGCGKTTT 45
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 27.0 bits (59), Expect = 4.2
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTL 234
+N++ E + G SG GKTT
Sbjct: 24 VNINIENGERFGILGPSGAGKTTF 47
>d2ccaa2 a.93.1.3 (A:436-720) Catalase-peroxidase KatG
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 285
Score = 26.7 bits (58), Expect = 4.2
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 19/53 (35%)
Query: 70 NNKYISPADFDTLKADMLDYIKDKDLFLQDLVACPHTKNAISVCVVTQYAWHS 122
++ + A+ +LK+ I+ L + LV AW +
Sbjct: 11 SHDLVGEAEIASLKSQ----IRASGLTVSQLV---------------STAWAA 44
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 26.8 bits (59), Expect = 4.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFL 242
IN++ EK ++ G +G+GKT+L + L
Sbjct: 55 INLNIEKGEMLAITGSTGSGKTSLLMLILGEL 86
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 26.7 bits (57), Expect = 4.4
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 222 LFFGLSGTGKTTLSASVDRFLIGDDEH 248
L +G +GTGK T ++ + G +
Sbjct: 37 LLYGPNGTGKKTRCMALLESIFGPGVY 63
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 26.7 bits (59), Expect = 4.4
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTL 234
+N++ ++ + G SG+GK+T+
Sbjct: 24 VNLNIKEGEFVSIMGPSGSGKSTM 47
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 26.8 bits (58), Expect = 4.4
Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 3/27 (11%)
Query: 222 LFFGLSGTGKTTLSASVDRFLIGDDEH 248
L G +GK+T + + I
Sbjct: 6 LLLGTGESGKSTF---IKQMRIIHGSG 29
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 26.9 bits (58), Expect = 4.5
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 220 VALFFGLSGTGKTTLSASVDRFL 242
V + G+ G G TT S L
Sbjct: 3 VVVVTGVPGVGSTTSSQLAMDNL 25
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 26.8 bits (59), Expect = 4.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEH 248
I M EK +V F G +G GKTTL ++ +L
Sbjct: 20 ITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 57
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 26.6 bits (58), Expect = 4.9
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 13/57 (22%)
Query: 186 EIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFL 242
++ V+ +L + I LF G +GKTTL+A++
Sbjct: 135 KMDSVVYDFLKCMV--YNIPKKRYW-----------LFKGPIDSGKTTLAAALLELC 178
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 26.3 bits (58), Expect = 5.8
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFL 242
+++ DV G SG+GK+T ++
Sbjct: 21 VSLQARAGDVISIIGSSGSGKSTFLRCINFLE 52
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 26.4 bits (58), Expect = 6.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFL 242
IN+ ++ +V G SG+GK+TL+ + RF
Sbjct: 22 INLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY 53
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 26.2 bits (56), Expect = 6.4
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 222 LFFGLSGTGKTTLSA 236
L G G+GK+T +
Sbjct: 6 LTIGCPGSGKSTWAR 20
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 26.0 bits (57), Expect = 6.4
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTL 234
I++ + + G +G GKTT
Sbjct: 25 IDLKVPRGQIVTLIGANGAGKTTT 48
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 279
Score = 26.1 bits (56), Expect = 6.6
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 212 NMDKEKEDVALFFGLSGTGKTTLSAS 237
++ + + + + G G GKTT++A+
Sbjct: 14 DIARNEHGLIMLMGKGGVGKTTMAAA 39
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 26.3 bits (57), Expect = 6.6
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 222 LFFGLSGTGKTTLSASVDRFLIGD 245
L G +GK+T+ V + I
Sbjct: 10 LLLGAGESGKSTI---VKQMRILH 30
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 25.9 bits (56), Expect = 7.6
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASV---DRFLIGDDEHGW 250
M G +G+GK+ +++ LIG +
Sbjct: 37 DEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSI 79
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 26.1 bits (57), Expect = 7.8
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTL 234
I+ + E+ ++ G +G GKTT
Sbjct: 21 ISFEIEEGEIFGLIGPNGAGKTTT 44
>d1na6a2 c.52.1.22 (A:179-398) Restriction endonuclease EcoRII,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 220
Score = 26.0 bits (57), Expect = 7.8
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 283 RFGTVLENVV---VDECGIPNFKDSSVTEN 309
R G LE + E G+ +F ++TE
Sbjct: 87 RAGKSLELHLEHLFIEHGLRHFATQAITEG 116
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 25.7 bits (56), Expect = 8.1
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLS 270
+++ K DV L G +G+GK+TL + FL D+ G + A+ +
Sbjct: 23 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE--GRVYFENKDITNKEPAELYHYG 80
Query: 271 KETEPEIFSASCRFGTVLENVVVDE 295
+ TVLEN+++ E
Sbjct: 81 IVRTFQTPQPLKEM-TVLENLLIGE 104
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 25.8 bits (55), Expect = 8.1
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 222 LFFGLSGTGKTTLS 235
+ G +G GK+T
Sbjct: 6 IITGPAGVGKSTTC 19
>d1qgoa_ c.92.1.2 (A:) Cobalt chelatase CbiK {Salmonella typhimurium
[TaxId: 90371]}
Length = 257
Score = 25.7 bits (56), Expect = 8.7
Identities = 17/114 (14%), Positives = 28/114 (24%), Gaps = 11/114 (9%)
Query: 28 REKTILTCDGALRALTGQHTGRSAFDKFIVRDSHTENDVFWENNKYISPAD-FDTLKADM 86
EK I+ C+ L A AF ++ + D + +P L A
Sbjct: 17 CEKNIVACERDLAASCPDRDLFRAFTSGMIIRKLRQRDGIDID----TPLQALQKLAAQG 72
Query: 87 LDYIKDKDLFLQDLVACPHTKNAISVCVVTQYAWHS--LFIRNLLKHKEDLGAV 138
+ + I V + LL D +
Sbjct: 73 YQDV----AIQSLHIINGDEYEKIVREVQLLRPLFTRLTLGVPLLSSHNDYVQL 122
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 25.6 bits (55), Expect = 9.8
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 220 VALFFGLSGTGKTTLSA 236
V + G G GK+T
Sbjct: 16 VVVAVGFPGAGKSTFIQ 32
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.416
Gapped
Lambda K H
0.267 0.0682 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,947,043
Number of extensions: 92148
Number of successful extensions: 443
Number of sequences better than 10.0: 1
Number of HSP's gapped: 426
Number of HSP's successfully gapped: 71
Length of query: 509
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 420
Effective length of database: 1,185,626
Effective search space: 497962920
Effective search space used: 497962920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.1 bits)