HHsearch alignment for GI: 254780827 and conserved domain: COG0552
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=95.70 E-value=0.026 Score=35.41 Aligned_cols=103 Identities=20% Similarity=0.153 Sum_probs=56.9
Q ss_pred CCCCCCCCHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHH
Q ss_conf 47999889899998744-88846899999998999999999999999989999987167766787679995278666733
Q gi|254780827|r 19 SKFSSILSKKISNQLLS-FDSPIDSTEIYKIYFPLSHLLLINVNSAKITCHQYNKFLNLKEESKIPFVVGITGSVAVGKS 97 (311)
Q Consensus 19 ~~~~~~l~~~~~~~l~~-~~d~i~~~ev~~iy~pl~~ll~~~~~~~~~~~~~~~~fl~~~~~~k~PfIIGIAG~~asGKS 97 (311)
T Consensus 79 aDvg~e~~~~i~~~l~~~~~~~~~~~~~~~v~~~l~~~l~~il~~~~-----~~~~~~~~~~~~~p~Vil~vGVNG~GKT 153 (340)
T COG0552 79 ADVGVETAEEIIEELRKREGKKKKIKDEETVKEALREALIEILRPVD-----KVDLPLEIPKEKKPFVILFVGVNGVGKT 153 (340)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC-----CCCCHHHHCCCCCCEEEEEEECCCCCHH
T ss_conf 02469999999999998751023689889999999999999846554-----4443655235898679999934888637
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCHH
Q ss_conf 7999999999733898689995088758826
Q gi|254780827|r 98 TFARILCILLQQISNFKVSLITTDGFLFPNA 128 (311)
Q Consensus 98 T~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~ 128 (311)
T Consensus 154 TTIaKLA~~l~~-~g~~VllaA~DTF-RAaA 182 (340)
T COG0552 154 TTIAKLAKYLKQ-QGKSVLLAAGDTF-RAAA 182 (340)
T ss_pred HHHHHHHHHHHH-CCCEEEEEECCHH-HHHH
T ss_conf 179999999997-8986999823347-8999