HHsearch alignment for GI: 254780827 and conserved domain: COG0572
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism].
Probab=100.00 E-value=4.7e-41 Score=297.89 Aligned_cols=191 Identities=26% Similarity=0.387 Sum_probs=169.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHH-HCHHHCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 8767999527866673379999999997338986899950887588268876-000201898133128999999997412
Q gi|254780827|r 81 KIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTA-NNLMQRKGFPESYDSNKLLTFLSDVKS 159 (311)
Q Consensus 81 k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~-~~l~~rkGfPeS~D~~~L~~~L~~lK~ 159 (311)
T Consensus 6 ~~~iiIgIaG~SgSGKTTv~~~l~~~~---~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~ 82 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQL---GVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQ 82 (218)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCCEEEECCCCCCCHHHCCHHHCCCCCCCCHHHHCHHHHHHHHHHHHC
T ss_conf 766999986798778899999999982---86752476522320253016675537857448234368999999999976
Q ss_pred CCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 66405874044322565898369986896599706100357654575777401000231157730889998879988788
Q gi|254780827|r 160 GKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLNRFL 239 (311)
Q Consensus 160 G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~Rf~ 239 (311)
T Consensus 83 g~~-v~~P~yd~~~~~r~~-~~i~~~p~~VIIvEGi~~l~d~~----------lr~~~d~kIfvdt~~D~RliRri~RD~ 150 (218)
T COG0572 83 GKP-VDLPVYDYKTHTREP-ETIKVEPNDVVIVEGILLLYDER----------LRDLMDLKIFVDTDADVRLIRRIKRDV 150 (218)
T ss_pred CCC-CCCCCCCHHCCCCCC-CCCCCCCCCEEEEECCCCCCCHH----------HHHHCCEEEEEECCCCHHHHHHHHHHH
T ss_conf 992-245642031363257-73313897289994230015076----------776606789997783278899888779
Q ss_pred HHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEE
Q ss_conf 876652016777998860599899999999998863166899952013136649997589984648
Q gi|254780827|r 240 KLRETAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILSKGEDHSVKT 305 (311)
Q Consensus 240 ~lr~~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~k~~~H~v~~ 305 (311)
T Consensus 151 ~~rg---~~~~~vi~qy----------------~~~vkp~~~~fIeptk~~ADiiip~~~~n~vav 197 (218)
T COG0572 151 QERG---RDLESVIEQY----------------VKTVRPMYEQFIEPTKKYADIIIPSGGKNEVAV 197 (218)
T ss_pred HHHC---CCHHHHHHHH----------------HHHHCHHHHHCCCCCCCCCEEEEECCCCCEEEH
T ss_conf 8819---9989999999----------------986174146015745111607851588644422