HHsearch alignment for GI: 254780827 and conserved domain: COG4962

>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].

Probab=93.84  E-value=0.082  Score=32.06  Aligned_cols=68  Identities=22%  Similarity=0.221  Sum_probs=38.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CCCEEE
Q ss_conf             689999999899999999999999998999998716776678767999527866673379999999997338-986899
Q gi|254780827|r   40 IDSTEIYKIYFPLSHLLLINVNSAKITCHQYNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILLQQIS-NFKVSL  117 (311)
Q Consensus        40 i~~~ev~~iy~pl~~ll~~~~~~~~~~~~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~-~~~V~l  117 (311)
T Consensus       137 lsIRKf~k~~ltl~dli-----~~gt~~~~~a~~L~~av~~r--~NILisGGTGSGKTTlLNa---l~~~i~~~eRvIt  205 (355)
T COG4962         137 LSIRKFPKIKLTLLDLI-----IFGTMIRRAAKFLRRAVGIR--CNILISGGTGSGKTTLLNA---LSGFIDSDERVIT  205 (355)
T ss_pred             CCCCCCCCCCCCHHHHH-----HCCCCCHHHHHHHHHHHHHC--EEEEEECCCCCCHHHHHHH---HHHCCCCCCEEEE
T ss_conf             04412565525599998-----73895889999999998620--1599967878879999999---9715797650899