HHsearch alignment for GI: 254780827 and conserved domain: PRK00139
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional.
Probab=97.36 E-value=0.0021 Score=42.85 Aligned_cols=94 Identities=26% Similarity=0.312 Sum_probs=57.7
Q ss_pred HHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHH
Q ss_conf 99998716776678767999527866673379999999997338986899950887588268876000201898133128
Q gi|254780827|r 68 HQYNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFPESYDS 147 (311)
Q Consensus 68 ~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~ 147 (311)
T Consensus 87 ~la~~~y~~-~~-~~l~vIgITGTn--GKTTt~~~l~~iL~~~g-~~~~~igT~g~~~~~~~~-~~~----lTTP~~l~L 156 (481)
T PRK00139 87 LLAAAFYGN-PS-DKLKLIGVTGTN--GKTTTAYLIAQILRLLG-KKAALIGTLGNGLGGTLI-PSG----LTTPEALDL 156 (481)
T ss_pred HHHHHHHCC-CH-HCCCEEEEECCC--CCHHHHHHHHHHHHHCC-CCCEEECCCCEECCCEEC-CCC----CCCCCHHHH
T ss_conf 999998708-04-318089995899--84349999999998749-863143022114187303-667----898876889
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 99999999741266405874044322
Q gi|254780827|r 148 NKLLTFLSDVKSGKKKVAVPRYSHSQ 173 (311)
Q Consensus 148 ~~L~~~L~~lK~G~~~V~~PvYsh~~ 173 (311)
T Consensus 157 ~~~l~~~~--e~g~~~~vmEvSShgl 180 (481)
T PRK00139 157 QRLLAEAV--DAGATHVAMEVSSHAL 180 (481)
T ss_pred HHHHHHHH--HCCCCEEEEEECHHHH
T ss_conf 99999999--8799779998430355