HHsearch alignment for GI: 254780827 and conserved domain: PRK00771
>PRK00771 signal recognition particle protein Srp54; Provisional.
Probab=97.56 E-value=0.00064 Score=46.36 Aligned_cols=64 Identities=27% Similarity=0.284 Sum_probs=46.2
Q ss_pred HHHHHHHHHCCC-CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHH
Q ss_conf 899999871677-667876799952786667337999999999733898689995088758826887
Q gi|254780827|r 66 TCHQYNKFLNLK-EESKIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLT 131 (311)
Q Consensus 66 ~~~~~~~fl~~~-~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~ 131 (311)
T Consensus 79 v~~eL~~llg~~~~~~~kP~Vim~vGlqGsGKTTT~aKLA~~~kk~-g~kv~lvaaDt~-RpaA~eQ 143 (433)
T PRK00771 79 VYEELVKLLGEEAEILLKPQTILLVGLQGSGKTTTAAKLARYFQKK-GLKVGVICADTW-RPGAYEQ 143 (433)
T ss_pred HHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCC-CHHHHHH
T ss_conf 9999999849676566898589997378897899999999999977-994678506788-3689999