HHsearch alignment for GI: 254780827 and conserved domain: PRK12727
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.60 E-value=0.00043 Score=47.49 Aligned_cols=87 Identities=25% Similarity=0.275 Sum_probs=56.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HCCCCCEEEEEECCCCCCHHH--HHHHCHHHCCCCH--HHHHHHHHHHHHHHHHC
Q ss_conf 999527866673379999999997-338986899950887588268--8760002018981--33128999999997412
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ-QISNFKVSLITTDGFLFPNAV--LTANNLMQRKGFP--ESYDSNKLLTFLSDVKS 159 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~-~~~~~~V~lis~DgF~~~n~~--l~~~~l~~rkGfP--eS~D~~~L~~~L~~lK~ 159 (311)
T Consensus 350 v~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~Dty-Riga~eQL~~y~~i--lgvpv~~~~~~~~l~~~l~~l~~ 426 (557)
T PRK12727 350 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQ-RVGGREQLHSYGRQ--LGIAVHEADSAESLLDLLERLRD 426 (557)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC-CHHHHHHHHHHHHH--HCCEEEEECCHHHHHHHHHHHCC
T ss_conf 4787437776731179999999999739981899972664-08799999999998--39757982899999999998369
Q ss_pred CCCEEEEECCCCCCCC
Q ss_conf 6640587404432256
Q gi|254780827|r 160 GKKKVAVPRYSHSQYD 175 (311)
Q Consensus 160 G~~~V~~PvYsh~~~D 175 (311)
T Consensus 427 ~-~lvliDTaG~~~rd 441 (557)
T PRK12727 427 Y-KLVLIDTAGMGQRD 441 (557)
T ss_pred C-CEEEEECCCCCCCC
T ss_conf 9-98999499988469