HHsearch alignment for GI: 254780827 and conserved domain: PRK12727

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.60  E-value=0.00043  Score=47.49  Aligned_cols=87  Identities=25%  Similarity=0.275  Sum_probs=56.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHH-HCCCCCEEEEEECCCCCCHHH--HHHHCHHHCCCCH--HHHHHHHHHHHHHHHHC
Q ss_conf             999527866673379999999997-338986899950887588268--8760002018981--33128999999997412
Q gi|254780827|r   85 VVGITGSVAVGKSTFARILCILLQ-QISNFKVSLITTDGFLFPNAV--LTANNLMQRKGFP--ESYDSNKLLTFLSDVKS  159 (311)
Q Consensus        85 IIGIAG~~asGKST~Ar~L~~lL~-~~~~~~V~lis~DgF~~~n~~--l~~~~l~~rkGfP--eS~D~~~L~~~L~~lK~  159 (311)
T Consensus       350 v~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~Dty-Riga~eQL~~y~~i--lgvpv~~~~~~~~l~~~l~~l~~  426 (557)
T PRK12727        350 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQ-RVGGREQLHSYGRQ--LGIAVHEADSAESLLDLLERLRD  426 (557)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC-CHHHHHHHHHHHHH--HCCEEEEECCHHHHHHHHHHHCC
T ss_conf             4787437776731179999999999739981899972664-08799999999998--39757982899999999998369


Q ss_pred             CCCEEEEECCCCCCCC
Q ss_conf             6640587404432256
Q gi|254780827|r  160 GKKKVAVPRYSHSQYD  175 (311)
Q Consensus       160 G~~~V~~PvYsh~~~D  175 (311)
T Consensus       427 ~-~lvliDTaG~~~rd  441 (557)
T PRK12727        427 Y-KLVLIDTAGMGQRD  441 (557)
T ss_pred             C-CEEEEECCCCCCCC
T ss_conf             9-98999499988469