HHsearch alignment for GI: 254780827 and conserved domain: PRK13851
>PRK13851 type IV secretion system protein VirB11; Provisional.
Probab=95.79 E-value=0.012 Score=37.62 Aligned_cols=45 Identities=20% Similarity=0.362 Sum_probs=27.5
Q ss_pred HHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CCCEEEEE
Q ss_conf 998716776678767999527866673379999999997338-98689995
Q gi|254780827|r 70 YNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILLQQIS-NFKVSLIT 119 (311)
Q Consensus 70 ~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~-~~~V~lis 119 (311)
T Consensus 151 ~~~fL~~aV~~r~--NIlIsGgTGSGKTTlln---ALl~~IP~~eRIvtIE 196 (343)
T PRK13851 151 LEAFLHACVVGRL--TMLLCGPTGSGKTTMSK---TLISAIPPQERLITIE 196 (343)
T ss_pred HHHHHHHHHHCCC--CEEEECCCCCCHHHHHH---HHHHCCCCCCCEEEEC
T ss_conf 9999999997698--89998889861999999---9996289655279961