HHsearch alignment for GI: 254780827 and conserved domain: PRK13869
>PRK13869 plasmid-partitioning protein RepA; Provisional.
Probab=94.51 E-value=0.15 Score=30.29 Aligned_cols=47 Identities=26% Similarity=0.365 Sum_probs=34.2
Q ss_pred HHHCCCCCCCCCEEEEEE---CCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 871677667876799952---78666733799999999973389868999508
Q gi|254780827|r 72 KFLNLKEESKIPFVVGIT---GSVAVGKSTFARILCILLQQISNFKVSLITTD 121 (311)
Q Consensus 72 ~fl~~~~~~k~PfIIGIA---G~~asGKST~Ar~L~~lL~~~~~~~V~lis~D 121 (311)
T Consensus 110 ~~~p~R~~~~~~kVIaVaN~KGG--VGKTTtav~LA~~LA~~-G~RVLlIDLD 159 (405)
T PRK13869 110 DFVPHRRGSEHLQVIAVTNFKGG--SGKTTTSAHLAQYLALQ-GYRVLAVDLD 159 (405)
T ss_pred CCCCCCCCCCCCEEEEEECCCCC--CHHHHHHHHHHHHHHHC-CCCEEEEECC
T ss_conf 45899999999828999788877--65999999999999977-9988999645