HHsearch alignment for GI: 254780827 and conserved domain: PRK13973
>PRK13973 thymidylate kinase; Provisional.
Probab=97.10 E-value=0.0077 Score=39.04 Aligned_cols=134 Identities=20% Similarity=0.250 Sum_probs=68.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCC---HHHH-------HHHHHHH
Q ss_conf 67999527866673379999999997338986899950887588268876000201898---1331-------2899999
Q gi|254780827|r 83 PFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGF---PESY-------DSNKLLT 152 (311)
Q Consensus 83 PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGf---PeS~-------D~~~L~~ 152 (311)
T Consensus 3 G~fIv~EGiDGsGKsTq~~~L~~~L~~~-g~~v~~trePg~-t~~~e~ir~~ll~~~~~~~~~~~e~lLfaA~R~eh~~~ 80 (216)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAA-GYDVLVTREPGG-SPGAEAIRHVLLSGAAELYGPAMEALLFAAARDDHVEE 80 (216)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCC-CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 2499988999998999999999999977-995799409899-84089999998466657899899999999999999999
Q ss_pred HHH-HHHCCCCEEEEECCCCCC--CCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHH
Q ss_conf 999-741266405874044322--56589836998689659970610035765457577740100023115773088999
Q gi|254780827|r 153 FLS-DVKSGKKKVAVPRYSHSQ--YDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRD 229 (311)
Q Consensus 153 ~L~-~lK~G~~~V~~PvYsh~~--~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~ 229 (311)
T Consensus 81 ~I~paL~~g~-~VI~DRy~~Ss~AYQg~~~------~~~~~~l~~l~~~~~~~~~------------PDlti~LDv~~e~ 141 (216)
T PRK13973 81 VIRPALARGK-IVLCDRFIDSTRAYQGVTG------NVDPALLAALERVAINGVM------------PDLTLILDIPAEV 141 (216)
T ss_pred HHHHHHHCCC-EEEECCCCCHHHHHHHHCC------CCCHHHHHHHHHHHHCCCC------------CCEEEEECCCHHH
T ss_conf 9999997799-8986786257999977427------8898999999999967999------------9989998188899
Q ss_pred HHHHHHHH
Q ss_conf 88799887
Q gi|254780827|r 230 IHRWYLNR 237 (311)
Q Consensus 230 i~~wyi~R 237 (311)
T Consensus 142 a~~R~~~R 149 (216)
T PRK13973 142 GLERAAKR 149 (216)
T ss_pred HHHHHHHH
T ss_conf 99999983