HHsearch alignment for GI: 254780827 and conserved domain: TIGR01420
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=96.81 E-value=0.001 Score=44.95 Aligned_cols=41 Identities=29% Similarity=0.448 Sum_probs=28.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-CCCEEEEEECC---CCCCHH
Q ss_conf 999527866673379999999997338-98689995088---758826
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQIS-NFKVSLITTDG---FLFPNA 128 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~-~~~V~lis~Dg---F~~~n~ 128 (311)
T Consensus 129 LiLVTGPTGSGKSTT---lAsmIDyIN~~~~~HIiTIEDPIEyvh~~~ 173 (350)
T TIGR01420 129 LILVTGPTGSGKSTT---LASMIDYINKNKAGHIITIEDPIEYVHKNK 173 (350)
T ss_pred CEEEECCCCCCHHHH---HHHHHHHHHCCCCCCCEEEECCEEEEECCC
T ss_conf 389876889867899---999997874038888256317731410477