HHsearch alignment for GI: 254780827 and conserved domain: TIGR01448
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=94.30 E-value=0.082 Score=32.07 Aligned_cols=65 Identities=20% Similarity=0.345 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 46899999998999999999999999989999987167766787679995278666733799999999973389
Q gi|254780827|r 39 PIDSTEIYKIYFPLSHLLLINVNSAKITCHQYNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILLQQISN 112 (311)
Q Consensus 39 ~i~~~ev~~iy~pl~~ll~~~~~~~~~~~~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~ 112 (311)
T Consensus 330 ~i~~~~~Q~hi~eve~~~~~~l~~------~Qk~AL~~~~~~K---v~iLTGGPGTGKtT~t~~i~~~~~~~~g 394 (769)
T TIGR01448 330 AINDEDLQKHILEVEKKLRLKLSE------EQKEALKTAIQDK---VVILTGGPGTGKTTITKAIIELYEELKG 394 (769)
T ss_pred CCCHHHHHHHHHHHHHHHCCCHHH------HHHHHHHHHHCCC---EEEEECCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 778689999999868750677068------8999999986094---8998577888616899999999987168