>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.

Probab=96.86 E-value=0.00065 Score=46.29 Aligned_cols=34 Identities=41% Similarity=0.458 Sum_probs=24.5 Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC--CCEEEEEECCCC Q ss_conf 9995278666733799999999973389--868999508875 Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISN--FKVSLITTDGFL 124 (311) Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~--~~V~lis~DgF~ 124 (311) T Consensus 358 ~laIIGPSgSGKStLaR~~---vG~W~~~~G~VRL---DGad 393 (556) T TIGR01842 358 ALAIIGPSGSGKSTLARIL---VGIWPPASGSVRL---DGAD 393 (556) T ss_pred EEEEECCCCCCHHHHHHHH---HHCCCCCCCCEEE---EHHH T ss_conf 5888747865258898788---7210135653364---0334

HHsearch alignment for GI: 254780827 and conserved domain: TIGR01842