HHsearch alignment for GI: 254780827 and conserved domain: TIGR01846
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=98.44 E-value=3.2e-07 Score=68.68 Aligned_cols=104 Identities=22% Similarity=0.350 Sum_probs=65.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH--------------HHC-C---CCCEEEEEECCCCCCHHHHHHHCHHHCCCCHH---
Q ss_conf 99952786667337999999999--------------733-8---98689995088758826887600020189813---
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL--------------QQI-S---NFKVSLITTDGFLFPNAVLTANNLMQRKGFPE--- 143 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL--------------~~~-~---~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPe--- 143 (311)
T Consensus 493 ~IGIvGpSGSGKSTLTKL~QRLYtP~~GqVLVDG~DLA~~DP~wLRRQ~gVVLQEn~LFsrSirdNI~l~~P-~~~~E~V 571 (703)
T TIGR01846 493 VIGIVGPSGSGKSTLTKLLQRLYTPEHGQVLVDGVDLAIADPAWLRRQVGVVLQENVLFSRSIRDNIALCNP-GASVEHV 571 (703)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHCCEEEEECCHHHCCCHHHHHHHCCC-CCCHHHH
T ss_conf 799872789867899999886148888747770300010185201022302340002101227889851777-7698999
Q ss_pred --HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC-EE-------EECCCCEEEEEC
Q ss_conf --3128999999997412664058740443225658983-69-------986896599706
Q gi|254780827|r 144 --SYDSNKLLTFLSDVKSGKKKVAVPRYSHSQYDILEGE-YD-------TIIQPDILLIEG 194 (311)
Q Consensus 144 --S~D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~-~~-------vi~~pdIIIvEG 194 (311)
T Consensus 572 i~AA~LAGA~dFI~~Lp~GY~T---~vgE~G--~~LSGGQRQRIAiARALv~nPrILifDE 627 (703)
T TIGR01846 572 IAAAKLAGAHDFISELPQGYNT---EVGEKG--ANLSGGQRQRIAIARALVANPRILIFDE 627 (703)
T ss_pred HHHHHHCCHHHHHHHCCCCCCC---CCEEEC--CCCCCHHHHHHHHHHHHHCCCCEEEHHH
T ss_conf 9998621858999736376774---001241--5667337899999999735894672011