HHsearch alignment for GI: 254780827 and conserved domain: TIGR02533
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=97.37 E-value=0.00019 Score=49.96 Aligned_cols=39 Identities=26% Similarity=0.449 Sum_probs=30.3
Q ss_pred CCCE-EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 8767-99952786667337999999999733898689995088
Q gi|254780827|r 81 KIPF-VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDG 122 (311)
Q Consensus 81 k~Pf-IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~Dg 122 (311)
T Consensus 242 ~rpHGIiLVTGPTGSGKtTT---LYaaL~~LN~~~~NIlTvED 281 (495)
T TIGR02533 242 KRPHGIILVTGPTGSGKTTT---LYAALSRLNTPERNILTVED 281 (495)
T ss_pred HCCCCEEEECCCCCCCHHHH---HHHHHHHHCCCCCCEEEEEC
T ss_conf 18896188417789852588---99999863589971568657