HHsearch alignment for GI: 254780827 and conserved domain: TIGR02782
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=97.16 E-value=0.00054 Score=46.84 Aligned_cols=118 Identities=17% Similarity=0.193 Sum_probs=61.8
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHH-HHHHHH
Q ss_conf 8744888468999999989999999--9999999998999998716776678767999527866673379999-999997
Q gi|254780827|r 32 QLLSFDSPIDSTEIYKIYFPLSHLL--LINVNSAKITCHQYNKFLNLKEESKIPFVVGITGSVAVGKSTFARI-LCILLQ 108 (311)
Q Consensus 32 ~l~~~~d~i~~~ev~~iy~pl~~ll--~~~~~~~~~~~~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~-L~~lL~ 108 (311)
T Consensus 89 RFeGl~PPVV~~p~F~IRkkA~~vfTLDdYV~~g-imtaaQ~d~l~~Av~ar~--NIlv~GGTGSGKTTLaNAlla~I~~ 165 (315)
T TIGR02782 89 RFEGLLPPVVEAPSFAIRKKAVRVFTLDDYVEAG-IMTAAQRDVLREAVAARK--NILVVGGTGSGKTTLANALLAEIAK 165 (315)
T ss_pred CCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHC-CCCHHHHHHHHHHHHHCC--CEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 1004687755655101110224104707776404-455789999999997129--8899814588579999999998852
Q ss_pred -HCCCCCEEEEEECCCCCCHHHHH--HHCHHHCCCCHHH-HHHHHHHHHHHHHH
Q ss_conf -33898689995088758826887--6000201898133-12899999999741
Q gi|254780827|r 109 -QISNFKVSLITTDGFLFPNAVLT--ANNLMQRKGFPES-YDSNKLLTFLSDVK 158 (311)
Q Consensus 109 -~~~~~~V~lis~DgF~~~n~~l~--~~~l~~rkGfPeS-~D~~~L~~~L~~lK 158 (311)
T Consensus 166 l~~P~dR~vIiE------DT~ElQC~A~N~V~lrT~d~~Gi~M~~LLk~TLRlR 213 (315)
T TIGR02782 166 LNDPDDRVVIIE------DTAELQCAAENLVALRTSDDVGISMTRLLKATLRLR 213 (315)
T ss_pred CCCCCCEEEEEE------CCHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCC
T ss_conf 169996189985------471320137870687448986614788888750058