HHsearch alignment for GI: 254780827 and conserved domain: TIGR02881
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=96.24 E-value=0.018 Score=36.55 Aligned_cols=69 Identities=26% Similarity=0.384 Sum_probs=40.6
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 89999874488846899999998999999999999999989999987167766787679995278666733799999999
Q gi|254780827|r 27 KKISNQLLSFDSPIDSTEIYKIYFPLSHLLLINVNSAKITCHQYNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCIL 106 (311)
Q Consensus 27 ~~~~~~l~~~~d~i~~~ev~~iy~pl~~ll~~~~~~~~~~~~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~l 106 (311)
T Consensus 2 ~~EL~~~vGL~~v--K~~i~EiYA----~i~i~~kR~-------~~--GLk~~-~~~LHMiFKGNPGTGKTTVAR~~gkl 65 (261)
T TIGR02881 2 ERELSRLVGLDEV--KELIKEIYA----WIQINEKRK-------EE--GLKTS-KQVLHMIFKGNPGTGKTTVARLLGKL 65 (261)
T ss_pred HHHHHHCCCHHHH--HHHHHHHHH----HHHHHHHHH-------HH--HHCCC-CCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 1235640488899--999999999----999988887-------51--01148-84478774278668438999999999
Q ss_pred HHHCC
Q ss_conf 97338
Q gi|254780827|r 107 LQQIS 111 (311)
Q Consensus 107 L~~~~ 111 (311)
T Consensus 66 f~emn 70 (261)
T TIGR02881 66 FKEMN 70 (261)
T ss_pred HHHCC
T ss_conf 85337