HHsearch alignment for GI: 254780827 and conserved domain: TIGR03345
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.80 E-value=0.25 Score=28.81 Aligned_cols=44 Identities=32% Similarity=0.459 Sum_probs=29.0
Q ss_pred HCCCCCCCCCE-EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 16776678767-9995278666733799999999973389868999508
Q gi|254780827|r 74 LNLKEESKIPF-VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTD 121 (311)
Q Consensus 74 l~~~~~~k~Pf-IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~D 121 (311)
T Consensus 587 aGl~-d~~rPigsFLFlGPTGVGKTElAK~LA~~L--Fg~-e~~liR~D 631 (852)
T TIGR03345 587 AGLE-DPRKPLGVFLLVGPSGVGKTETALALAELL--YGG-EQNLITIN 631 (852)
T ss_pred CCCC-CCCCCCEEEEEECCCCCCHHHHHHHHHHHH--CCC-CCCEEEEC
T ss_conf 1799-999985689987899877899999999997--198-61147842