HHsearch alignment for GI: 254780827 and conserved domain: TIGR03574
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.62 E-value=0.00095 Score=45.18 Aligned_cols=115 Identities=20% Similarity=0.258 Sum_probs=61.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 99952786667337999999999733898689995088758826887600020189813312899999999741266405
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSDVKSGKKKV 164 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK~G~~~V 164 (311)
T Consensus 1 Livl~GlP~SGKSt~a~~L~~~l~~~-~~~~i~~~~d~~~-~-----~~~~-----~~~~~-----Ek~~r~~~~--~~v 61 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELSKKLSEK-NIDNIILGTDLIR-E-----SFPV-----WKEKY-----EEFIRDSTL--YLI 61 (249)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHH-CCCEEEECCCCCH-H-----HHHH-----CCHHH-----HHHHHHHHH--HHH
T ss_conf 97896789998999999999999982-9965996552002-1-----2000-----33677-----999899999--999
Q ss_pred EEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEEC--CCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 87404432256589836998689659970610035765457577740100--023115773088999887998878
Q gi|254780827|r 165 AVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMIS--DFLDFSIYIDADKRDIHRWYLNRF 238 (311)
Q Consensus 165 ~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vs--D~fD~sIyVDad~~~i~~wyi~Rf 238 (311)
T Consensus 62 ~----------------~~l~~~~~vI~D~~nYiKg~R--Y--EL~clAk~~~t~~c~I~~~~p~e~c~~~N~~R~ 117 (249)
T TIGR03574 62 K----------------TALKNKYSVIVDDTNYYNSKR--R--DLINIAKEYNKNYIIIYLKAPLDTLLRRNIERG 117 (249)
T ss_pred H----------------HHHCCCCEEEECCCCHHHHHH--H--HHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCC
T ss_conf 9----------------984337669972732788999--9--999999984998699997399999999876068