HHsearch alignment for GI: 254780827 and conserved domain: TIGR03575
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.87 E-value=0.0016 Score=43.59 Aligned_cols=145 Identities=23% Similarity=0.271 Sum_probs=70.1
Q ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHH----CCCCHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 52786667337999999999733898689995088758826887600020----18981331289999999974126640
Q gi|254780827|r 88 ITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQ----RKGFPESYDSNKLLTFLSDVKSGKKK 163 (311)
Q Consensus 88 IAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~----rkGfPeS~D~~~L~~~L~~lK~G~~~ 163 (311)
T Consensus 4 LcGLPaAGKTTLar~L~~~l~~~~gw~v~vI~YDdlI-p~~~~e~e~~~~~~s~WK~~R-q~lLk~LE~fl~al~n~~-~ 80 (340)
T TIGR03575 4 LCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII-PEAAFELDQSREIPSQWKQFR-QELLKYLEHFLVAVINGS-E 80 (340)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHHC-CHHHHCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHCCC-C
T ss_conf 3269878736899999999864447605898621214-254531235776613799999-999999999999984533-3
Q ss_pred EEEECC-------CCCC----CCC-C-CC--C--------EEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEE
Q ss_conf 587404-------4322----565-8-98--3--------6998689659970610035765457577740100023115
Q gi|254780827|r 164 VAVPRY-------SHSQ----YDI-L-EG--E--------YDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFS 220 (311)
Q Consensus 164 V~~PvY-------sh~~----~D~-v-p~--~--------~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~s 220 (311)
T Consensus 81 ~~~p~~~t~~~w~~fi~cL~eqgL~i~~~~~~~~~~~~l~~~~~~~pl~iiLDDNfyY~SMRye~yqLark~--~~gf~q 158 (340)
T TIGR03575 81 LSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKY--SLGFCQ 158 (340)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHH--CCCEEE
T ss_conf 678755675215777777652254334565534432200244567753799546148888899999999981--875279
Q ss_pred EEEECCHHHHHHHHHHH
Q ss_conf 77308899988799887
Q gi|254780827|r 221 IYIDADKRDIHRWYLNR 237 (311)
Q Consensus 221 IyVDad~~~i~~wyi~R 237 (311)
T Consensus 159 i~l~c~le~cl~RN~~R 175 (340)
T TIGR03575 159 LFLDCPVESCLLRNKQR 175 (340)
T ss_pred EEECCCHHHHHHHCCCC
T ss_conf 88628799999740258