HHsearch alignment for GI: 254780827 and conserved domain: cd00267
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.85 E-value=0.015 Score=36.98 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
T Consensus 27 ~~~i~G~nGaGKSTLl~~l~gl~ 49 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998788999899999995884