HHsearch alignment for GI: 254780827 and conserved domain: cd00544

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.32  E-value=0.025  Score=35.56  Aligned_cols=89  Identities=21%  Similarity=0.365  Sum_probs=46.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             99952786667337999999999733898689995088758826887600020189813312899999999741266405
Q gi|254780827|r   85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSDVKSGKKKV  164 (311)
Q Consensus        85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK~G~~~V  164 (311)
T Consensus         1 iiLVtGG~rSGKS~~AE~la---~~~~~~~~YiAT~~~~---D~Em~~RI~~Hr~~R~~~w----------------~Ti   58 (169)
T cd00544           1 IILVTGGARSGKSRFAERLA---AELGGPVTYIATAEAF---DDEMAERIARHRKRRPAHW----------------RTI   58 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHH---HHCCCCCEEEECCCCC---CHHHHHHHHHHHHCCCCCC----------------EEE
T ss_conf             98997786636899999999---8459981999788988---9899999999996689996----------------699


Q ss_pred             EEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCC
Q ss_conf             87404432256589836998689659970610035765
Q gi|254780827|r  165 AVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNS  202 (311)
Q Consensus       165 ~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~  202 (311)
T Consensus        59 E~~~~l---~~----~l~~~~~~~~vLiDclt~wl~N~   89 (169)
T cd00544          59 ETPRDL---VS----ALKELDPGDVVLIDCLTLWVTNL   89 (169)
T ss_pred             ECCCCH---HH----HHHHCCCCCEEEEECHHHHHHHH
T ss_conf             634439---99----99855988859986078999998