HHsearch alignment for GI: 254780827 and conserved domain: cd01122

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

Probab=94.56  E-value=0.072  Score=32.44  Aligned_cols=110  Identities=15%  Similarity=0.151  Sum_probs=54.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCH-------HHHHHHHHHHHHHHH
Q ss_conf             9995278666733799999999973389868999508875882688760002018981-------331289999999974
Q gi|254780827|r   85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFP-------ESYDSNKLLTFLSDV  157 (311)
Q Consensus        85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfP-------eS~D~~~L~~~L~~l  157 (311)
T Consensus        32 L~viaarpg~GKT~f~~~~a~~~~~~~g~~vl~~SlE---m~~~~~~~Rlls~~~g~~~~~~~~~~~~~~e~~~~~~~~~  108 (271)
T cd01122          32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE---EPVVRTARRLLGQYAGKRLHLPDTVFIYTLEEFDAAFDEF  108 (271)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECC---CCHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             8999968998699999999999999769908999704---9999999999999829971103446778099999999997


Q ss_pred             HCCCCEEEEECCCCCCCC---CCCC---CEEEECCCCEEEEECCHHCCC
Q ss_conf             126640587404432256---5898---369986896599706100357
Q gi|254780827|r  158 KSGKKKVAVPRYSHSQYD---ILEG---EYDTIIQPDILLIEGINVLQQ  200 (311)
Q Consensus       158 K~G~~~V~~PvYsh~~~D---~vp~---~~~vi~~pdIIIvEGi~vL~~  200 (311)
T Consensus       109 ~~~-~~--l~i~d~~~~~~~~~i~~~ir~~~~~~~~~~vvIDylqll~~  154 (271)
T cd01122         109 EGT-GR--LFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVS  154 (271)
T ss_pred             CCC-CC--EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCC
T ss_conf             079-98--08878999988999999999999828998899831785036