HHsearch alignment for GI: 254780827 and conserved domain: cd01130
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.38 E-value=0.022 Score=35.97 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-CCCEEEE
Q ss_conf 999527866673379999999997338-9868999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQIS-NFKVSLI 118 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~-~~~V~li 118 (311)
T Consensus 27 nIlIsG~tGSGKTTll~---al~~~i~~~~rivti 58 (186)
T cd01130 27 NILISGGTGSGKTTLLN---ALLAFIPPDERIITI 58 (186)
T ss_pred CEEEECCCCCCHHHHHH---HHHHHCCCCCCEEEE
T ss_conf 89998999998999999---999613345645984