HHsearch alignment for GI: 254780827 and conserved domain: cd01394
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.89 E-value=0.15 Score=30.34 Aligned_cols=52 Identities=23% Similarity=0.268 Sum_probs=33.8
Q ss_pred HHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 9987167766787679995278666733799999999973389868999508875
Q gi|254780827|r 70 YNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFL 124 (311)
Q Consensus 70 ~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~ 124 (311)
T Consensus 8 lD~vLgGG--i~~G~it~i~G~pG~GKStl~lq~a~~~~~-~g~~v~YidtE~~~ 59 (218)
T cd01394 8 LDELLGGG--VERGTVTQVYGPPGTGKTNIAIQLAVETAG-QGKKVAYIDTEGLS 59 (218)
T ss_pred HHHHHCCC--CCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCC
T ss_conf 99985699--878879999899998499999999999863-69869999665567