HHsearch alignment for GI: 254780827 and conserved domain: cd03114
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.47 E-value=0.00016 Score=50.43 Aligned_cols=120 Identities=22% Similarity=0.270 Sum_probs=65.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC--CCHHHHHHHCHHHCC-CCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9995278666733799999999973389868999508875--882688760002018-9813312899999999741266
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFL--FPNAVLTANNLMQRK-GFPESYDSNKLLTFLSDVKSGK 161 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~--~~n~~l~~~~l~~rk-GfPeS~D~~~L~~~L~~lK~G~ 161 (311)
T Consensus 1 viGitG~pGaGKStLi~~l~~~~~~-~g~~VaVlavDPsS~~sgGalLGDRiRm~~~~~~~~vf--------iRs~atrg 71 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRA-RGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVF--------IRSLATRG 71 (148)
T ss_pred CEEECCCCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEE--------EEECCCCC
T ss_conf 9762589978789999999999997-89837999968887866862032354534415799836--------86346666
Q ss_pred CEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCH
Q ss_conf 405874044322565898369986896599706100357654575777401000231157730889
Q gi|254780827|r 162 KKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADK 227 (311)
Q Consensus 162 ~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~ 227 (311)
T Consensus 72 ~~---ggla~~~~~~i~--~l~~~g~D~IiIETvGvGQse---------~~i~~~aD~~i~v~~p~ 123 (148)
T cd03114 72 FL---GGLSRATPEVIR--VLDAAGFDVIIVETVGVGQSE---------VDIASMADTTVVVMAPG 123 (148)
T ss_pred CC---CCHHHHHHHHHH--HHHHCCCCEEEEECCCCCCCH---------HHHHHHCCEEEEEECCC
T ss_conf 54---204688999999--999759998999748777560---------26554356699996368