HHsearch alignment for GI: 254780827 and conserved domain: cd03221
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.78 E-value=0.024 Score=35.65 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
T Consensus 28 ~~~l~G~NGsGKTTl~~~l~G~~~ 51 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999998999849999999848988