>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

Probab=95.34  E-value=0.0085  Score=38.76  Aligned_cols=27  Identities=37%  Similarity=0.439  Sum_probs=22.2

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             679995278666733799999999973
Q gi|254780827|r   83 PFVVGITGSVAVGKSTFARILCILLQQ  109 (311)
Q Consensus        83 PfIIGIAG~~asGKST~Ar~L~~lL~~  109 (311)
T Consensus        25 GEiv~ilGpNGaGKSTllk~i~G~l~p   51 (177)
T cd03222          25 GEVIGIVGPNGTGKTTAVKILAGQLIP   51 (177)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf             989999899999999999999688678