HHsearch alignment for GI: 254780827 and conserved domain: cd03248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.35 E-value=0.00013 Score=50.98 Aligned_cols=48 Identities=29% Similarity=0.399 Sum_probs=35.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-C-----------------CCCEEEEEECCCCCCHHHHHH
Q ss_conf 99952786667337999999999733-8-----------------986899950887588268876
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-S-----------------NFKVSLITTDGFLFPNAVLTA 132 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-~-----------------~~~V~lis~DgF~~~n~~l~~ 132 (311)
T Consensus 42 ~vaIvG~sGsGKSTL~~ll~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eN 107 (226)
T cd03248 42 VTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDN 107 (226)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHCEEEEECCCEECCCCHHHH
T ss_conf 999999999849999999964546788789999999344899999732699924795767735666