HHsearch alignment for GI: 254780827 and conserved domain: cd03255
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.55 E-value=0.0061 Score=39.72 Aligned_cols=74 Identities=26% Similarity=0.281 Sum_probs=42.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC--------------C--------CCCEEEEEECCCCCCH-HHHHH--HCHHHC
Q ss_conf 799952786667337999999999733--------------8--------9868999508875882-68876--000201
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCILLQQI--------------S--------NFKVSLITTDGFLFPN-AVLTA--NNLMQR 138 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~lL~~~--------------~--------~~~V~lis~DgF~~~n-~~l~~--~~l~~r 138 (311)
T Consensus 31 e~~~iiG~sGsGKTTll~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~~Ig~v~Q~~~L~~~ltV~eni~~~~-~~ 109 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPL-LL 109 (218)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHH-HH
T ss_conf 89999999998699999999669999964999999998879989999986504789866752155643999999999-98
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q ss_conf 89813312899999999741
Q gi|254780827|r 139 KGFPESYDSNKLLTFLSDVK 158 (311)
Q Consensus 139 kGfPeS~D~~~L~~~L~~lK 158 (311)
T Consensus 110 ~~~~~~~~~~~v~~~l~~l~ 129 (218)
T cd03255 110 AGVPKKERRERAEELLERVG 129 (218)
T ss_pred CCCCHHHHHHHHHHHHHHCC
T ss_conf 49998999999998767679