HHsearch alignment for GI: 254780827 and conserved domain: cd03257
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.30 E-value=0.0018 Score=43.28 Aligned_cols=24 Identities=42% Similarity=0.634 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~Gl~~ 56 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999869999999972898