HHsearch alignment for GI: 254780827 and conserved domain: cd03259
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.17 E-value=0.013 Score=37.52 Aligned_cols=104 Identities=18% Similarity=0.311 Sum_probs=57.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--------------CC--CCCEEEEEECCCCCCH-HHHHHHC-HHHCCCCHHHHH
Q ss_conf 9995278666733799999999973--------------38--9868999508875882-6887600-020189813312
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQ--------------IS--NFKVSLITTDGFLFPN-AVLTANN-LMQRKGFPESYD 146 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~--------------~~--~~~V~lis~DgF~~~n-~~l~~~~-l~~rkGfPeS~D 146 (311)
T Consensus 28 i~~iiGpnGaGKSTl~~~i~Gl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~ 107 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEI 107 (213)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHH
T ss_conf 99999999973999999997599989708999999988899778786999069865889819999988998759998999
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC-------EEEECCCCEEEEEC
Q ss_conf 8999999997412664058740443225658983-------69986896599706
Q gi|254780827|r 147 SNKLLTFLSDVKSGKKKVAVPRYSHSQYDILEGE-------YDTIIQPDILLIEG 194 (311)
Q Consensus 147 ~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~-------~~vi~~pdIIIvEG 194 (311)
T Consensus 108 ~~~~~~~l~~~~l~------~~~~~~~~~LSGG~kQrv~iAraL~~~P~illlDE 156 (213)
T cd03259 108 RARVRELLELVGLE------GLLNRYPHELSGGQQQRVALARALAREPSLLLLDE 156 (213)
T ss_pred HHHHHHHHHHCCCH------HHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 99999999986996------47637703389899999999876227999999839