HHsearch alignment for GI: 254780827 and conserved domain: cd03263
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.44 E-value=0.0084 Score=38.77 Aligned_cols=109 Identities=20% Similarity=0.211 Sum_probs=54.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CC----------------CCEEEEEECCCCCCH-HHHHHHCHH-HCCCCHHHH
Q ss_conf 99952786667337999999999733-89----------------868999508875882-688760002-018981331
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-SN----------------FKVSLITTDGFLFPN-AVLTANNLM-QRKGFPESY 145 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-~~----------------~~V~lis~DgF~~~n-~~l~~~~l~-~rkGfPeS~ 145 (311)
T Consensus 30 i~~llG~NGaGKSTLl~~i~Gl~~p~~G~I~i~G~~i~~~~~~~~~~ig~v~q~~~l~~~ltv~e~l~~~~~~~g~~~~~ 109 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSE 109 (220)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEECCCCHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHH
T ss_conf 99999899973999999996698788997799999776588988605699923565687887999999989756999899
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEC--CCCCCCCCCCCCEEEECCCCEEEEEC
Q ss_conf 28999999997412664058740--44322565898369986896599706
Q gi|254780827|r 146 DSNKLLTFLSDVKSGKKKVAVPR--YSHSQYDILEGEYDTIIQPDILLIEG 194 (311)
Q Consensus 146 D~~~L~~~L~~lK~G~~~V~~Pv--Ysh~~~D~vp~~~~vi~~pdIIIvEG 194 (311)
T Consensus 110 ~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~~P~lliLDE 159 (220)
T cd03263 110 IKEEVELLLRVLGLT-DKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDE 159 (220)
T ss_pred HHHHHHHHHHHCCCH-HHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 999999999876967-77507576789999999999999956999999958