HHsearch alignment for GI: 254780827 and conserved domain: cd03263

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.44  E-value=0.0084  Score=38.77  Aligned_cols=109  Identities=20%  Similarity=0.211  Sum_probs=54.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC-CC----------------CCEEEEEECCCCCCH-HHHHHHCHH-HCCCCHHHH
Q ss_conf             99952786667337999999999733-89----------------868999508875882-688760002-018981331
Q gi|254780827|r   85 VVGITGSVAVGKSTFARILCILLQQI-SN----------------FKVSLITTDGFLFPN-AVLTANNLM-QRKGFPESY  145 (311)
Q Consensus        85 IIGIAG~~asGKST~Ar~L~~lL~~~-~~----------------~~V~lis~DgF~~~n-~~l~~~~l~-~rkGfPeS~  145 (311)
T Consensus        30 i~~llG~NGaGKSTLl~~i~Gl~~p~~G~I~i~G~~i~~~~~~~~~~ig~v~q~~~l~~~ltv~e~l~~~~~~~g~~~~~  109 (220)
T cd03263          30 IFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSE  109 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEECCCCHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHH
T ss_conf             99999899973999999996698788997799999776588988605699923565687887999999989756999899


Q ss_pred             HHHHHHHHHHHHHCCCCEEEEEC--CCCCCCCCCCCCEEEECCCCEEEEEC
Q ss_conf             28999999997412664058740--44322565898369986896599706
Q gi|254780827|r  146 DSNKLLTFLSDVKSGKKKVAVPR--YSHSQYDILEGEYDTIIQPDILLIEG  194 (311)
Q Consensus       146 D~~~L~~~L~~lK~G~~~V~~Pv--Ysh~~~D~vp~~~~vi~~pdIIIvEG  194 (311)
T Consensus       110 ~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~~P~lliLDE  159 (220)
T cd03263         110 IKEEVELLLRVLGLT-DKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDE  159 (220)
T ss_pred             HHHHHHHHHHHCCCH-HHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             999999999876967-77507576789999999999999956999999958