HHsearch alignment for GI: 254780827 and conserved domain: cd03264
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.53 E-value=0.057 Score=33.16 Aligned_cols=109 Identities=19% Similarity=0.240 Sum_probs=52.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CC----------------CCEEEEEECCCCCCHHH-HHHHC-HHHCCCCHHHH
Q ss_conf 99952786667337999999999733-89----------------86899950887588268-87600-02018981331
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-SN----------------FKVSLITTDGFLFPNAV-LTANN-LMQRKGFPESY 145 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-~~----------------~~V~lis~DgF~~~n~~-l~~~~-l~~rkGfPeS~ 145 (311)
T Consensus 27 i~gllGpNGAGKSTll~~i~Gl~~p~sG~i~i~g~~~~~~~~~~~~~iG~vpq~~~l~~~ltv~e~l~~~~~l~g~~~~~ 106 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKE 106 (211)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHH
T ss_conf 59999999823999999997596689629999999966188989730799757776898987999999999985999899
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECC--CCCCCCCCCCCEEEECCCCEEEEEC
Q ss_conf 289999999974126640587404--4322565898369986896599706
Q gi|254780827|r 146 DSNKLLTFLSDVKSGKKKVAVPRY--SHSQYDILEGEYDTIIQPDILLIEG 194 (311)
Q Consensus 146 D~~~L~~~L~~lK~G~~~V~~PvY--sh~~~D~vp~~~~vi~~pdIIIvEG 194 (311)
T Consensus 107 ~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~kqrv~ia~al~~~P~lliLDE 156 (211)
T cd03264 107 VKARVDEVLELVNLG-DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDE 156 (211)
T ss_pred HHHHHHHHHHHCCCH-HHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 999999999986995-58559544589889999999999828999999948