HHsearch alignment for GI: 254780827 and conserved domain: cd03264

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.53  E-value=0.057  Score=33.16  Aligned_cols=109  Identities=19%  Similarity=0.240  Sum_probs=52.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC-CC----------------CCEEEEEECCCCCCHHH-HHHHC-HHHCCCCHHHH
Q ss_conf             99952786667337999999999733-89----------------86899950887588268-87600-02018981331
Q gi|254780827|r   85 VVGITGSVAVGKSTFARILCILLQQI-SN----------------FKVSLITTDGFLFPNAV-LTANN-LMQRKGFPESY  145 (311)
Q Consensus        85 IIGIAG~~asGKST~Ar~L~~lL~~~-~~----------------~~V~lis~DgF~~~n~~-l~~~~-l~~rkGfPeS~  145 (311)
T Consensus        27 i~gllGpNGAGKSTll~~i~Gl~~p~sG~i~i~g~~~~~~~~~~~~~iG~vpq~~~l~~~ltv~e~l~~~~~l~g~~~~~  106 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKE  106 (211)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHH
T ss_conf             59999999823999999997596689629999999966188989730799757776898987999999999985999899


Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECC--CCCCCCCCCCCEEEECCCCEEEEEC
Q ss_conf             289999999974126640587404--4322565898369986896599706
Q gi|254780827|r  146 DSNKLLTFLSDVKSGKKKVAVPRY--SHSQYDILEGEYDTIIQPDILLIEG  194 (311)
Q Consensus       146 D~~~L~~~L~~lK~G~~~V~~PvY--sh~~~D~vp~~~~vi~~pdIIIvEG  194 (311)
T Consensus       107 ~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~kqrv~ia~al~~~P~lliLDE  156 (211)
T cd03264         107 VKARVDEVLELVNLG-DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDE  156 (211)
T ss_pred             HHHHHHHHHHHCCCH-HHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             999999999986995-58559544589889999999999828999999948