HHsearch alignment for GI: 254780827 and conserved domain: cd03271

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.62  E-value=0.027  Score=35.33  Aligned_cols=17  Identities=29%  Similarity=0.481  Sum_probs=15.7

Q ss_pred             EEEEECCCCCCHHHHHH
Q ss_conf             99952786667337999
Q gi|254780827|r   85 VVGITGSVAVGKSTFAR  101 (311)
Q Consensus        85 IIGIAG~~asGKST~Ar  101 (311)
T Consensus        23 ~~aIiG~sGsGKSTLl~   39 (261)
T cd03271          23 LTCVTGVSGSGKSSLIN   39 (261)
T ss_pred             EEEEECCCCCCHHHHHH
T ss_conf             99998799986999999