HHsearch alignment for GI: 254780827 and conserved domain: cd03271
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.62 E-value=0.027 Score=35.33 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=15.7
Q ss_pred EEEEECCCCCCHHHHHH
Q ss_conf 99952786667337999
Q gi|254780827|r 85 VVGITGSVAVGKSTFAR 101 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar 101 (311)
T Consensus 23 ~~aIiG~sGsGKSTLl~ 39 (261)
T cd03271 23 LTCVTGVSGSGKSSLIN 39 (261)
T ss_pred EEEEECCCCCCHHHHHH
T ss_conf 99998799986999999