HHsearch alignment for GI: 254780827 and conserved domain: cd03298
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.88 E-value=0.022 Score=35.88 Aligned_cols=72 Identities=22% Similarity=0.216 Sum_probs=39.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC----------------CCCEEEEEECCCCCCHH-HHHH--HCHHHCCCCHHHH
Q ss_conf 999527866673379999999997338----------------98689995088758826-8876--0002018981331
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQIS----------------NFKVSLITTDGFLFPNA-VLTA--NNLMQRKGFPESY 145 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~----------------~~~V~lis~DgF~~~n~-~l~~--~~l~~rkGfPeS~ 145 (311)
T Consensus 26 ~~~ilGpSGsGKSTLl~li~Gl~~p~sG~I~i~G~di~~~~~~~r~ig~vfQ~~~L~p~ltV~eNi~~~l~~-~~~~~~~ 104 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSP-GLKLTAE 104 (211)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHH-CCCCHHH
T ss_conf 999999999559999999976999885299999999999998898679995388668999499998758864-6888299
Q ss_pred HHHHHHHHHHHH
Q ss_conf 289999999974
Q gi|254780827|r 146 DSNKLLTFLSDV 157 (311)
Q Consensus 146 D~~~L~~~L~~l 157 (311)
T Consensus 105 ~~~~v~~~l~~~ 116 (211)
T cd03298 105 DRQAIEVALARV 116 (211)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999876