HHsearch alignment for GI: 254780827 and conserved domain: cd03298

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.88  E-value=0.022  Score=35.88  Aligned_cols=72  Identities=22%  Similarity=0.216  Sum_probs=39.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCC----------------CCCEEEEEECCCCCCHH-HHHH--HCHHHCCCCHHHH
Q ss_conf             999527866673379999999997338----------------98689995088758826-8876--0002018981331
Q gi|254780827|r   85 VVGITGSVAVGKSTFARILCILLQQIS----------------NFKVSLITTDGFLFPNA-VLTA--NNLMQRKGFPESY  145 (311)
Q Consensus        85 IIGIAG~~asGKST~Ar~L~~lL~~~~----------------~~~V~lis~DgF~~~n~-~l~~--~~l~~rkGfPeS~  145 (311)
T Consensus        26 ~~~ilGpSGsGKSTLl~li~Gl~~p~sG~I~i~G~di~~~~~~~r~ig~vfQ~~~L~p~ltV~eNi~~~l~~-~~~~~~~  104 (211)
T cd03298          26 ITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSP-GLKLTAE  104 (211)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHH-CCCCHHH
T ss_conf             999999999559999999976999885299999999999998898679995388668999499998758864-6888299


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             289999999974
Q gi|254780827|r  146 DSNKLLTFLSDV  157 (311)
Q Consensus       146 D~~~L~~~L~~l  157 (311)
T Consensus       105 ~~~~v~~~l~~~  116 (211)
T cd03298         105 DRQAIEVALARV  116 (211)
T ss_pred             HHHHHHHHHHHC
T ss_conf             999999999876