HHsearch alignment for GI: 254780827 and conserved domain: cd03300
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.32 E-value=0.014 Score=37.38 Aligned_cols=73 Identities=21% Similarity=0.277 Sum_probs=40.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--------------CC--CCCEEEEEECCCCCCHHHHH---HHCHHHCCCCHHHH
Q ss_conf 9995278666733799999999973--------------38--98689995088758826887---60002018981331
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQ--------------IS--NFKVSLITTDGFLFPNAVLT---ANNLMQRKGFPESY 145 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~--------------~~--~~~V~lis~DgF~~~n~~l~---~~~l~~rkGfPeS~ 145 (311)
T Consensus 28 ~~~iiGpSGsGKSTllr~i~Gl~~p~~G~I~~~g~~v~~~~~~~r~ig~VfQ~~~Lfp~ltV~~Nva~~l~~-~~~~~~e 106 (232)
T cd03300 28 FFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRL-KKLPKAE 106 (232)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHH-CCCCHHH
T ss_conf 999999999839999999977999985399999999999995457756991488547789199998779987-6999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 2899999999741
Q gi|254780827|r 146 DSNKLLTFLSDVK 158 (311)
Q Consensus 146 D~~~L~~~L~~lK 158 (311)
T Consensus 107 ~~~rv~e~l~~v~ 119 (232)
T cd03300 107 IKERVAEALDLVQ 119 (232)
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999987589